Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ELTD1	64123	hgsc.bcm.edu	hg19	1	79386001	79386001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ELTD1	NM_022159	exon10	c.C1328T	p.A443V	CATATGGCAAGAC	.	135.0	37.0	161.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
LMNA	4000	hgsc.bcm.edu	hg19	1	156105085	156105085	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	LMNA	NM_170707	exon5	c.C918T	p.L306L	CCAGCTCAGCCAG	.	35.0	10.0	37.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
SLC5A6	8884	hgsc.bcm.edu	hg19	2	27427384	27427384	+	Missense_Mutation	SNP	G	G	A	rs199587675		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	SLC5A6,colon,carcinoma,0,1	SLC5A6	NM_021095	exon9	c.C950T	p.A317V	TAATACGCGAACA	.	107.0	33.0	109.0	0.0	.	63	.	.	.	weak	.	.	PASS	Atlas-SNP
RAB3GAP1	22930	hgsc.bcm.edu	hg19	2	135815628	135815628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	RAB3GAP1	NM_001172435	exon3	c.G122A	p.G41E	TGATTGGAAACTC	.	76.0	27.0	66.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179429062	179429062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	TTN	NM_001267550	exon326	c.C81797A	p.A27266E	TCTCTTGCAGTAA	.	135.0	31.0	138.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
FYTTD1	84248	hgsc.bcm.edu	hg19	3	197501076	197501076	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	FYTTD1	NM_032288	exon6	c.T651C	p.T217T	GAGAACTCGTCAG	.	139.0	6.0	150.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
PRSS12	8492	hgsc.bcm.edu	hg19	4	119273492	119273492	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	PRSS12	NM_003619	exon1	c.T384A	p.A128A	CAGCTGAGCCCAG	.	8.0	4.0	3.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
SLC12A7	10723	hgsc.bcm.edu	hg19	5	1094290	1094290	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SLC12A7	NM_006598	exon2	c.G198A	p.G66G	GTTCTTCCCTTCA	.	87.0	49.0	171.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
POP1	10940	hgsc.bcm.edu	hg19	8	99142345	99142345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	POP1,NS,carcinoma,0,1	POP1	NM_001145860	exon5	c.C626T	p.A209V	GGCACGCCAAGCG	.	115.0	45.0	128.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
RDX	5962	hgsc.bcm.edu	hg19	11	110124813	110124813	+	Missense_Mutation	SNP	G	G	T	rs370869036	alternate_allele	TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	RDX	NM_001260493	exon9	c.C817A	p.R273S	TCAGACGAGGTGC	.	77.0	4.0	80.0	0.0	.	59	.	.	.	alt	.	.	PASS	Atlas-SNP
NELL2	4753	hgsc.bcm.edu	hg19	12	45097517	45097517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	NELL2	NM_001145107	exon13	c.A1460G	p.Y487C	TCACAGTAGGCAT	.	104.0	32.0	136.0	0.0	.	286	.	.	.	none	.	.	PASS	Atlas-SNP
ELMSAN1	91748	hgsc.bcm.edu	hg19	14	74196477	74196477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	.	NM_194278	exon4	c.A1961G	p.Y654C	GGCGTGTAGGGAG	.	78.0	23.0	95.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	33905537	33905537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	RYR3	NM_001243996	exon19	c.G2318T	p.G773V	CAGACGGGCTCTT	.	32.0	18.0	52.0	0.0	.	760	.	.	.	none	.	.	PASS	Atlas-SNP
NUP88	4927	hgsc.bcm.edu	hg19	17	5314095	5314095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	NUP88	NM_002532	exon4	c.G608A	p.R203H	GGCTCACGTAGTG	.	240.0	84.0	254.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
MYH3	4621	hgsc.bcm.edu	hg19	17	10554908	10554908	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	MYH3	NM_002470	exon5	c.C426T	p.G142G	TCGGTAGCCTTCC	.	232.0	68.0	243.0	0.0	.	227	.	.	.	none	.	.	PASS	Atlas-SNP
GH1	2688	hgsc.bcm.edu	hg19	17	61995168	61995168	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	GH1	NM_000515	exon4	c.C408A	p.V136V	GTCATAGACGTTG	.	131.0	57.0	128.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38948197	38948197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	RYR1,caecum,carcinoma,0,1	RYR1	NM_001042723	exon17	c.G1852T	p.D618Y	AACCAAGATCTTA	.	311.0	14.0	293.0	0.0	.	708	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF175	7728	hgsc.bcm.edu	hg19	19	52091521	52091521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ZNF175	NM_007147	exon5	c.T1937C	p.L646P	AATGCCTTGACTG	.	156.0	50.0	154.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRA	5786	hgsc.bcm.edu	hg19	20	2998529	2998529	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	PTPRA	NM_002836	exon17	c.C1011T	p.V337V	CATCGTCATGGTT	.	57.0	27.0	69.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
SSX1	6756	hgsc.bcm.edu	hg19	X	48123289	48123289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SSX1	NM_005635	exon6	c.G403A	p.D135N	CAAAACGATGGGA	.	345.0	19.0	334.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
USP26	83844	hgsc.bcm.edu	hg19	X	132160221	132160221	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	USP26	NM_031907	exon1	c.T2028G	p.P676P	GCTGGCAGGTTTA	.	196.0	41.0	215.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
LSM14A	26065	hgsc.bcm.edu	hg19	19	34710448	34710449	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	LSM14A	NM_001114093	exon7	c.933_934del	p.311_312del	.	.	142.0	59.0	144.0	0.0	.	44	.	0.415493	0	none	.	.	PASS	Atlas-INDEL
ACTR1B	10120	hgsc.bcm.edu	hg19	2	98275011	98275014	+	Frame_Shift_Del	DEL	GAGT	GAGT	-	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	GAGT	GAGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ACTR1B	NM_005735	exon6	c.534_537del	p.178_179del	.	.	73.0	10.0	105.0	0.0	.	34	.	0.136986	0	none	.	.	PASS	Atlas-INDEL