Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm CHD5 26038 hgsc.bcm.edu hg19 1 6214783 6214783 + Missense_Mutation SNP C C T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . CHD5 NM_015557 exon5 c.G682A p.V228I GGCTGACGGCTAG . 129.0 55.0 95.0 0.0 . 267 . . . none . . PASS Atlas-SNP ENO1 2023 hgsc.bcm.edu hg19 1 8926559 8926559 + Missense_Mutation SNP G G T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ENO1 NM_001428 exon7 c.C446A p.A149E TTGAACGCCTGGG . 52.0 20.0 42.0 0.0 . 38 . . . none . . PASS Atlas-SNP TMEM57 55219 hgsc.bcm.edu hg19 1 25784936 25784936 + Missense_Mutation SNP G G A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . TMEM57 NM_018202 exon6 c.G707A p.G236D ATGGAGGTATCCC . 302.0 111.0 297.0 0.0 . 72 . . . none . . PASS Atlas-SNP STMN1 3925 hgsc.bcm.edu hg19 1 26230144 26230144 + Missense_Mutation SNP T T A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . STMN1 NM_005563 exon3 c.A174T p.E58D TCTTTCTTCTGCA . 61.0 15.0 65.0 0.0 . 22 . . . none . . PASS Atlas-SNP UBXN11 91544 hgsc.bcm.edu hg19 1 26608865 26608865 + Silent SNP A A G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . UBXN11 NM_183008 exon16 c.T1488C p.G496G ACCGGGACCGGGA . 33.0 24.0 31.0 0.0 . 54 . . . none . . PASS Atlas-SNP WASF2 10163 hgsc.bcm.edu hg19 1 27742557 27742557 + Silent SNP A A C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . WASF2 NM_006990 exon5 c.T459G p.P153P GTATGAAGGGTCT . 103.0 31.0 88.0 0.0 . 41 . . . none . . PASS Atlas-SNP PTPRU 10076 hgsc.bcm.edu hg19 1 29585188 29585188 + Missense_Mutation SNP G G C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . PTPRU NM_001195001 exon3 c.G377C p.G126A ATGGGGGCCCCCT . 132.0 50.0 121.0 0.0 . 374 . . . none . . PASS Atlas-SNP DLGAP3 58512 hgsc.bcm.edu hg19 1 35370206 35370206 + Nonsense_Mutation SNP C C T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . DLGAP3 NM_001080418 exon1 c.G779A p.W260X CTCCACCAGCCTG . 93.0 33.0 99.0 0.0 . 107 . . . none . . PASS Atlas-SNP KLHL20 27252 hgsc.bcm.edu hg19 1 173754361 173754361 + Silent SNP A A G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . KLHL20 NM_014458 exon12 c.A1806G p.T602T AATGACACATTGT . 44.0 20.0 51.0 0.0 . 54 . . . none . . PASS Atlas-SNP RFWD2 64326 hgsc.bcm.edu hg19 1 176105635 176105635 + Missense_Mutation SNP T T G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . RFWD2 NM_022457 exon7 c.A880C p.K294Q CTCTCTTAATATC . 191.0 60.0 168.0 0.0 . 67 . . . none . . PASS Atlas-SNP WDR64 128025 hgsc.bcm.edu hg19 1 241823862 241823862 + Nonsense_Mutation SNP C C A rs150170869 bycluster;by1000genomes;alternate_allele TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . WDR64 NM_144625 exon2 c.C176A p.S59X ATGCATCGGTACA . 241.0 76.0 243.0 0.0 . 234 . . . alt C|0.997;T|0.003 . PASS Atlas-SNP OR11L1 391189 hgsc.bcm.edu hg19 1 248004550 248004550 + Missense_Mutation SNP G G A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . OR11L1 NM_001001959 exon1 c.C649T p.P217S CATAGGGCCCCAG . 302.0 96.0 304.0 0.0 . 108 . . . none . . PASS Atlas-SNP PNPT1 87178 hgsc.bcm.edu hg19 2 55900032 55900032 + Missense_Mutation SNP G G C rs141543222 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . PNPT1 NM_033109 exon9 c.C862G p.H288D ACTTATGAGTATA . 97.0 39.0 92.0 0.0 . 68 . . . alt G|0.998;A|0.002 . PASS Atlas-SNP CNNM4 26504 hgsc.bcm.edu hg19 2 97427711 97427711 + Missense_Mutation SNP C C G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . CNNM4 NM_020184 exon1 c.C975G p.D325E CCTGGACTTTTTT . 174.0 65.0 154.0 0.0 . 48 . . . none . . PASS Atlas-SNP MCM6 4175 hgsc.bcm.edu hg19 2 136614438 136614438 + Missense_Mutation SNP G G A rs202222981 by1000genomes;alternate_allele TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . MCM6 NM_005915 exon11 c.C1486T p.R496W ACGTCCGGGCGTT . 112.0 32.0 106.0 0.0 . 64 . . . alt G|1.000;T|0.000 . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179604477 179604477 + Missense_Mutation SNP T T A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . TTN NM_001267550 exon48 c.A13483T p.I4495F GCTGAATTCTAGG . 153.0 56.0 155.0 0.0 . 18412 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179604480 179604480 + Silent SNP T T G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . TTN NM_001267550 exon48 c.A13480C p.R4494R GAATTCTAGGACC . 153.0 57.0 153.0 0.0 . 18412 . . . none . . PASS Atlas-SNP DIS3L2 129563 hgsc.bcm.edu hg19 2 233001388 233001388 + Silent SNP C C T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . DIS3L2 NM_152383 exon8 c.C909T p.C303C CATCTGCCGCATT . 148.0 49.0 138.0 0.0 . 77 . . . none . . PASS Atlas-SNP NUP210 23225 hgsc.bcm.edu hg19 3 13383246 13383246 + Splice_Site SNP A A G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . NUP210 NM_024923 exon24 c.3228+2T>C . CGTCTTACTTCAA . 47.0 17.0 46.0 0.0 . 182 . . . none . . PASS Atlas-SNP COLQ 8292 hgsc.bcm.edu hg19 3 15531095 15531095 + Nonsense_Mutation SNP G G T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . COLQ NM_080539 exon2 c.C156A p.C52X CAGCAGGCAGCAT . 66.0 22.0 48.0 0.0 . 82 . . . none . . PASS Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41275683 41275683 + Silent SNP T T G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . CTNNB1 NM_001098209 exon10 c.T1578G p.P526P TGCACCTTTGCGT . 157.0 61.0 123.0 0.0 . 4904 . . . none . . PASS Atlas-SNP GPR87 53836 hgsc.bcm.edu hg19 3 151012726 151012726 + Missense_Mutation SNP C C G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . GPR87 NM_023915 exon3 c.G308C p.G103A CCAAATCCTGCAT . 94.0 27.0 84.0 0.0 . 52 . . . none . . PASS Atlas-SNP PIK3CA 5290 hgsc.bcm.edu hg19 3 178936082 178936082 + Missense_Mutation SNP G G A rs121913273 TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 PIK3CA_ENST00000263967,NS,carcinoma,0,2 PIK3CA NM_006218 exon10 c.G1624A p.E542K CTCTCTGAAATCA . 502.0 193.0 468.0 0.0 . 8460 . . . weak . . PASS Atlas-SNP FAM157A 728262 hgsc.bcm.edu hg19 3 197880164 197880164 + Silent SNP G G A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . FAM157A NM_001145248 exon2 c.G243A p.Q81Q GCAGCAGCAGCAG . 310.0 24.0 262.0 0.0 . 4 . . . none . . PASS Atlas-SNP PIGG 54872 hgsc.bcm.edu hg19 4 514958 514958 + Silent SNP A A C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . PIGG NM_017733 exon7 c.A1228C p.R410R GTTCTCAGGCAGT . 141.0 54.0 117.0 0.0 . 86 . . . none . . PASS Atlas-SNP NSG1 0 hgsc.bcm.edu hg19 4 4389387 4389387 + Missense_Mutation SNP A A G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . . NM_014392 exon2 c.A31G p.K11E GCAGAGAAGGGCA . 347.0 120.0 243.0 0.0 . . . . . none . . PASS Atlas-SNP KLF3 51274 hgsc.bcm.edu hg19 4 38690438 38690438 + Missense_Mutation SNP T T C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . KLF3 NM_016531 exon3 c.T290C p.M97T TGAGCATGCCTTC . 129.0 46.0 108.0 0.0 . 40 . . . none . . PASS Atlas-SNP AMBN 258 hgsc.bcm.edu hg19 4 71468348 71468348 + Missense_Mutation SNP G G T rs199556863 bycluster TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . AMBN NM_016519 exon7 c.G539T p.G180V TCCCAGGAGTAGA . 309.0 16.0 247.0 0.0 . 73 . . . weak . . PASS Atlas-SNP TMEM150C 441027 hgsc.bcm.edu hg19 4 83424056 83424056 + Silent SNP T T G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . TMEM150C NM_001080506 exon4 c.A159C p.P53P TATATATGGTGCA . 182.0 65.0 181.0 0.0 . 16 . . . none . . PASS Atlas-SNP WDFY3 23001 hgsc.bcm.edu hg19 4 85748064 85748064 + Missense_Mutation SNP T T C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . WDFY3 NM_014991 exon10 c.A1027G p.T343A ATGTTGTTAGGGA . 117.0 41.0 92.0 0.0 . 314 . . . none . . PASS Atlas-SNP SPRY1 10252 hgsc.bcm.edu hg19 4 124323105 124323105 + Missense_Mutation SNP C C T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . SPRY1 NM_001258039 exon2 c.C359T p.A120V GAAGTGCAGCCAG . 227.0 91.0 195.0 0.0 . 28 . . . none . . PASS Atlas-SNP TLR2 7097 hgsc.bcm.edu hg19 4 154625017 154625017 + Missense_Mutation SNP C C T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . TLR2 NM_003264 exon3 c.C958T p.P320S CATATTCCAAGGT . 116.0 42.0 99.0 0.0 . 84 . . . none . . PASS Atlas-SNP FNIP2 57600 hgsc.bcm.edu hg19 4 159816926 159816926 + Missense_Mutation SNP C C G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . FNIP2 NM_020840 exon16 c.C3175G p.L1059V GATAGACTACAGG . 80.0 22.0 73.0 0.0 . 90 . . . none . . PASS Atlas-SNP KIAA0825 285600 hgsc.bcm.edu hg19 5 93722048 93722048 + Missense_Mutation SNP C C T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . KIAA0825 NM_001145678 exon19 c.G3518A p.R1173Q AAAGGTCGGATGG . 167.0 56.0 132.0 0.0 . 172 . . . none . . PASS Atlas-SNP CSF1R 1436 hgsc.bcm.edu hg19 5 149449790 149449790 + Missense_Mutation SNP G G A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . CSF1R NM_005211 exon9 c.C1274T p.P425L GGCTGGGGGTACC . 80.0 33.0 53.0 0.0 . 250 . . . none . . PASS Atlas-SNP GABRB2 2561 hgsc.bcm.edu hg19 5 160763641 160763641 + Missense_Mutation SNP G G T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . GABRB2 NM_021911 exon7 c.C677A p.T226K AAACCTGTGGAAA . 105.0 39.0 84.0 0.0 . 161 . . . none . . PASS Atlas-SNP RGS14 10636 hgsc.bcm.edu hg19 5 176799074 176799074 + Missense_Mutation SNP T T C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . RGS14 NM_006480 exon15 c.T1699C p.X567R GCCCTCTGACAGC . 58.0 12.0 63.0 0.0 . 34 . . . none . . PASS Atlas-SNP DPCR1 135656 hgsc.bcm.edu hg19 6 30917945 30917945 + Silent SNP G G A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . DPCR1 NM_080870 exon2 c.G1704A p.L568L TCCTTTGGCCAAT . 113.0 45.0 123.0 0.0 . 99 . . . none . . PASS Atlas-SNP CRISP2 7180 hgsc.bcm.edu hg19 6 49668403 49668403 + Missense_Mutation SNP G G A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . CRISP2 NM_001142408 exon5 c.C161T p.P54L CTGGCAGGTGGAG . 112.0 43.0 100.0 0.0 . 53 . . . none . . PASS Atlas-SNP MB21D1 115004 hgsc.bcm.edu hg19 6 74149944 74149944 + Missense_Mutation SNP T T G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . MB21D1 NM_138441 exon3 c.A1102C p.N368H AACCATTTCCTTC . 108.0 29.0 108.0 0.0 . 33 . . . none . . PASS Atlas-SNP SASH1 23328 hgsc.bcm.edu hg19 6 148855991 148855991 + Silent SNP C C T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . SASH1 NM_015278 exon16 c.C2049T p.H683H GGAACACAGAGCT . 103.0 44.0 91.0 0.0 . 123 . . . none . . PASS Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152473219 152473219 + Missense_Mutation SNP A A G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . SYNE1 NM_182961 exon134 c.T24187C p.Y8063H GGCGGTACTGCTT . 71.0 24.0 71.0 0.0 . 3227 . . . none . . PASS Atlas-SNP ARID1B 57492 hgsc.bcm.edu hg19 6 157099429 157099429 + Silent SNP G G A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ARID1B NM_017519 exon1 c.G366A p.Q122Q GCAACAGCAGCAG . 43.0 8.0 29.0 0.0 . 320 . . . none . . PASS Atlas-SNP IGF2R 3482 hgsc.bcm.edu hg19 6 160466824 160466824 + Missense_Mutation SNP T T A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . IGF2R NM_000876 exon14 c.T1813A p.C605S GGCGGTTGCTTTT . 90.0 24.0 79.0 0.0 . 251 . . . none . . PASS Atlas-SNP ITGB8 3696 hgsc.bcm.edu hg19 7 20418715 20418715 + Missense_Mutation SNP A A C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ITGB8 NM_002214 exon4 c.A430C p.K144Q CTGAAGAAATATC . 109.0 34.0 95.0 0.0 . 159 . . . none . . PASS Atlas-SNP HOXA10 3206 hgsc.bcm.edu hg19 7 27211696 27211696 + Missense_Mutation SNP T T C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . HOXA10 NM_018951 exon2 c.A1055G p.E352G TCCTTCTCCAGCT . 154.0 42.0 131.0 0.0 . 55 . . . none . . PASS Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48317949 48317949 + Missense_Mutation SNP C C A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ABCA13 NM_152701 exon18 c.C7158A p.F2386L CTTTTTCACAGTG . 155.0 52.0 141.0 0.0 . 1192 . . . none . . PASS Atlas-SNP CLDN3 1365 hgsc.bcm.edu hg19 7 73184246 73184246 + Missense_Mutation SNP A A G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . CLDN3 NM_001306 exon1 c.T134C p.I45T TCCCAGATGTTCT . 138.0 46.0 112.0 0.0 . 6 . . . none . . PASS Atlas-SNP ZNF804B 219578 hgsc.bcm.edu hg19 7 88964261 88964261 + Missense_Mutation SNP C C G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ZNF804B NM_181646 exon4 c.C1965G p.N655K ATTCAACTGCAAG . 233.0 83.0 205.0 0.0 . 322 . . . none . . PASS Atlas-SNP ZNF3 7551 hgsc.bcm.edu hg19 7 99674930 99674930 + Silent SNP G G A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ZNF3 NM_032924 exon3 c.C51T p.D17D ACCACTGTCAAGC . 130.0 6.0 91.0 0.0 . 54 . . . none . . PASS Atlas-SNP ATXN7L1 222255 hgsc.bcm.edu hg19 7 105516974 105516974 + Missense_Mutation SNP G G C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ATXN7L1 NM_020725 exon1 c.C31G p.L11V CCGAGAGACACGG . 87.0 25.0 88.0 0.0 . 56 . . . none . . PASS Atlas-SNP MLL3 58508 hgsc.bcm.edu hg19 7 151874116 151874116 + Missense_Mutation SNP C C T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . MLL3 NM_170606 exon38 c.G8422A p.D2808N GTTTATCAGAGAG . 80.0 23.0 65.0 0.0 . 1564 . . . none . . PASS Atlas-SNP TNKS 8658 hgsc.bcm.edu hg19 8 9564428 9564428 + Silent SNP T T C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . TNKS NM_003747 exon8 c.T1377C p.A459A TGGCGCTGATCCT . 105.0 41.0 89.0 0.0 . 198 . . . none . . PASS Atlas-SNP DPP7 29952 hgsc.bcm.edu hg19 9 140009153 140009153 + Missense_Mutation SNP G G C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . DPP7 NM_013379 exon1 c.C13G p.P5A CCCAGGGAGCGGA . 34.0 11.0 34.0 0.0 . 22 . . . none . . PASS Atlas-SNP PNPLA7 375775 hgsc.bcm.edu hg19 9 140354898 140354898 + Missense_Mutation SNP G G T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . PNPLA7 NM_001098537 exon35 c.C3976A p.P1326T GACTGGGGTGTCG . 61.0 22.0 51.0 0.0 . 124 . . . none . . PASS Atlas-SNP GAD2 2572 hgsc.bcm.edu hg19 10 26505778 26505778 + Nonsense_Mutation SNP G G T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . GAD2 NM_000818 exon1 c.G40T p.E14X GGGTCGGAAGATG . 107.0 41.0 80.0 0.0 . 116 . . . none . . PASS Atlas-SNP NRP1 8829 hgsc.bcm.edu hg19 10 33496597 33496597 + Silent SNP A A G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . NRP1 NM_001244973 exon10 c.T1662C p.F554F AGCTGGAAAAGTC . 103.0 8.0 62.0 0.0 . 126 . . . none . . PASS Atlas-SNP BICC1 80114 hgsc.bcm.edu hg19 10 60549020 60549020 + Splice_Site SNP A A G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . BICC1 NM_001080512 exon7 c.601-2A>G . CATTTTAGGAGCT . 91.0 40.0 80.0 0.0 . 121 . . . none . . PASS Atlas-SNP UBTD1 80019 hgsc.bcm.edu hg19 10 99330070 99330070 + Silent SNP C C A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . UBTD1 NM_024954 exon3 c.C474A p.G158G CACGGGCAAGGAC . 76.0 25.0 81.0 0.0 . 19 . . . none . . PASS Atlas-SNP MKI67 4288 hgsc.bcm.edu hg19 10 129909928 129909928 + Silent SNP G G A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . MKI67 NM_002417 exon11 c.C2241T p.D747D CTTAAAGTCCATT . 90.0 27.0 64.0 0.0 . 363 . . . none . . PASS Atlas-SNP MKI67 4288 hgsc.bcm.edu hg19 10 129909929 129909929 + Missense_Mutation SNP T T A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . MKI67 NM_002417 exon11 c.A2240T p.D747V TTAAAGTCCATTT . 94.0 27.0 65.0 0.0 . 363 . . . none . . PASS Atlas-SNP MUC6 4588 hgsc.bcm.edu hg19 11 1020248 1020248 + Missense_Mutation SNP G G T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . MUC6 NM_005961 exon29 c.C3650A p.P1217H TGCGTGGGCCGTG . 94.0 32.0 67.0 0.0 . 408 . . . none . . PASS Atlas-SNP OR56A3 390083 hgsc.bcm.edu hg19 11 5969097 5969097 + Missense_Mutation SNP G G T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . OR56A3 NM_001003443 exon1 c.G521T p.G174V ATTGTGGAAGAAA . 81.0 25.0 81.0 0.0 . 81 . . . none . . PASS Atlas-SNP RRP8 23378 hgsc.bcm.edu hg19 11 6622765 6622765 + Silent SNP A A C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . RRP8 NM_015324 exon3 c.T531G p.P177P GGGTTTAGGGGAA . 23.0 4.0 19.0 0.0 . 40 . . . none . . PASS Atlas-SNP PRDM11 56981 hgsc.bcm.edu hg19 11 45203876 45203876 + Missense_Mutation SNP A A C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . PRDM11 NM_001256695 exon3 c.A199C p.S67R CCCAAAAGCTTCC . 101.0 35.0 106.0 0.0 . 53 . . . none . . PASS Atlas-SNP USP28 57646 hgsc.bcm.edu hg19 11 113683009 113683009 + Missense_Mutation SNP T T A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . USP28 NM_020886 exon16 c.A1961T p.Y654F TTGAAGTAGGGTA . 118.0 39.0 91.0 0.0 . 135 . . . none . . PASS Atlas-SNP ETS1 2113 hgsc.bcm.edu hg19 11 128354849 128354849 + Missense_Mutation SNP T T G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ETS1 NM_001143820 exon7 c.A731C p.K244T TCATACTTGAGGG . 130.0 62.0 95.0 0.0 . 123 . . . none . . PASS Atlas-SNP ANP32D 23519 hgsc.bcm.edu hg19 12 48866715 48866715 + Missense_Mutation SNP C C G rs147147368 alternate_allele TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 ANP32D,NS,malignant_melanoma,0,1 ANP32D NM_012404 exon1 c.C268G p.L90V CCAAACCTCATAC . 122.0 40.0 107.0 1.0 . 15 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP NCKAP1L 3071 hgsc.bcm.edu hg19 12 54930739 54930739 + Missense_Mutation SNP A A T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . NCKAP1L NM_005337 exon29 c.A3085T p.N1029Y AACAACAATATTC . 57.0 19.0 78.0 0.0 . 180 . . . none . . PASS Atlas-SNP RAB21 23011 hgsc.bcm.edu hg19 12 72179447 72179447 + Silent SNP T T C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . RAB21 NM_014999 exon7 c.T672C p.S224S TTCTTCTGGATAA . 159.0 50.0 169.0 0.0 . 17 . . . none . . PASS Atlas-SNP RAB21 23011 hgsc.bcm.edu hg19 12 72179448 72179448 + Missense_Mutation SNP G G A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . RAB21 NM_014999 exon7 c.G673A p.G225R TCTTCTGGATAAC . 158.0 49.0 166.0 0.0 . 17 . . . none . . PASS Atlas-SNP PAH 5053 hgsc.bcm.edu hg19 12 103248991 103248991 + Missense_Mutation SNP A A T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . PAH NM_000277 exon6 c.T629A p.F210Y AGTGGAAAAATGT . 107.0 46.0 108.0 0.0 . 77 . . . none . . PASS Atlas-SNP SSH1 54434 hgsc.bcm.edu hg19 12 109212091 109212091 + Splice_Site SNP T T A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . SSH1 NM_018984 exon5 c.215-2A>T . ATCACCTGTTGGA . 188.0 84.0 205.0 0.0 . 144 . . . none . . PASS Atlas-SNP ERP29 10961 hgsc.bcm.edu hg19 12 112457648 112457648 + Missense_Mutation SNP A A C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ERP29 NM_006817 exon2 c.A233C p.E78A TTGCTGAAAACTC . 114.0 38.0 74.0 0.0 . 17 . . . none . . PASS Atlas-SNP SUDS3 64426 hgsc.bcm.edu hg19 12 118852238 118852238 + Missense_Mutation SNP A A C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . SUDS3 NM_022491 exon12 c.A987C p.X329C TGCTTGACTTTCT . 35.0 13.0 35.0 0.0 . 26 . . . none . . PASS Atlas-SNP KLHL1 57626 hgsc.bcm.edu hg19 13 70371015 70371015 + Missense_Mutation SNP C C G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . KLHL1 NM_020866 exon7 c.G1494C p.Q498H ACCAAACTGCAGC . 146.0 58.0 103.0 0.0 . 164 . . . none . . PASS Atlas-SNP PCCA 5095 hgsc.bcm.edu hg19 13 101077890 101077890 + Missense_Mutation SNP G G C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . PCCA NM_001178004 exon20 c.G1750C p.E584Q CAGGTGGAAGTTG . 142.0 52.0 141.0 0.0 . 59 . . . none . . PASS Atlas-SNP ABHD13 84945 hgsc.bcm.edu hg19 13 108882094 108882094 + Silent SNP G G A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ABHD13 NM_032859 exon2 c.G528A p.V176V CTACGTGATGACT . 81.0 27.0 75.0 0.0 . 39 . . . none . . PASS Atlas-SNP BTBD6 90135 hgsc.bcm.edu hg19 14 105716843 105716843 + Missense_Mutation SNP C C A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . BTBD6 NM_033271 exon5 c.C1292A p.T431K TCTACACGGCCAG . 78.0 12.0 57.0 0.0 . 24 . . . none . . PASS Atlas-SNP VPS18 57617 hgsc.bcm.edu hg19 15 41191884 41191884 + Missense_Mutation SNP G G A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . VPS18 NM_020857 exon4 c.G868A p.D290N ATGGGGGATGGTG . 26.0 17.0 48.0 0.0 . 67 . . . none . . PASS Atlas-SNP CEP152 22995 hgsc.bcm.edu hg19 15 49089695 49089695 + Silent SNP G G T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . CEP152 NM_014985 exon5 c.C343A p.R115R GATGTCGGTCTTC . 125.0 50.0 139.0 0.0 . 145 . . . none . . PASS Atlas-SNP HERC1 8925 hgsc.bcm.edu hg19 15 63991178 63991178 + Silent SNP A A G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . HERC1 NM_003922 exon26 c.T4654C p.L1552L ATTCCAATTGACT . 133.0 57.0 141.0 0.0 . 624 . . . none . . PASS Atlas-SNP CIB1 10519 hgsc.bcm.edu hg19 15 90774633 90774633 + Missense_Mutation SNP G G T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . CIB1 NM_006384 exon4 c.C302A p.T101K GTGGCTGTGTCAC . 111.0 41.0 103.0 0.0 . 8 . . . none . . PASS Atlas-SNP ABCC6 368 hgsc.bcm.edu hg19 16 16244452 16244452 + Silent SNP G G C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ABCC6 NM_001171 exon30 c.C4386G p.S1462S CATCACGGAGCGC . 164.0 62.0 104.0 0.0 . 110 . . . none . . PASS Atlas-SNP FHOD1 29109 hgsc.bcm.edu hg19 16 67264360 67264360 + Missense_Mutation SNP C C T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . FHOD1 NM_013241 exon19 c.G2908A p.E970K GCACTTCACGGGC . 217.0 32.0 91.0 0.0 . 86 . . . none . . PASS Atlas-SNP CENPT 80152 hgsc.bcm.edu hg19 16 67862427 67862427 + Silent SNP A A G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . CENPT NM_025082 exon15 c.T1512C p.H504H GCCAGCATGAGCA . 200.0 36.0 76.0 0.0 . 26 . . . none . . PASS Atlas-SNP GEMIN4 50628 hgsc.bcm.edu hg19 17 649755 649755 + Missense_Mutation SNP C C T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . GEMIN4 NM_015721 exon2 c.G1528A p.G510S AGAGGCCCTTTCG . 122.0 34.0 119.0 0.0 . 116 . . . none . . PASS Atlas-SNP SCO1 6341 hgsc.bcm.edu hg19 17 10596136 10596136 + Missense_Mutation SNP G G C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . SCO1 NM_004589 exon3 c.C507G p.C169W ATCAGGGCAATGA . 82.0 30.0 62.0 0.0 . 24 . . . none . . PASS Atlas-SNP KRTAP4-5 85289 hgsc.bcm.edu hg19 17 39305774 39305774 + Missense_Mutation SNP C C G rs137947981 bycluster TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 KRTAP4-5,NS,carcinoma,0,1 KRTAP4-5 NM_033188 exon1 c.G246C p.Q82H GGTGGTCTGGCAG . 57.0 36.0 34.0 2.0 . 34 . . . weak . . PASS Atlas-SNP KRTAP4-5 85289 hgsc.bcm.edu hg19 17 39305775 39305775 + Missense_Mutation SNP T T C rs141265645 bycluster TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 KRTAP4-5,NS,carcinoma,+1,1 KRTAP4-5 NM_033188 exon1 c.A245G p.Q82R GTGGTCTGGCAGC . 56.0 36.0 34.0 2.0 . 34 . . . weak . . PASS Atlas-SNP KRT9 3857 hgsc.bcm.edu hg19 17 39723874 39723874 + Missense_Mutation SNP C C G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . KRT9 NM_000226 exon7 c.G1523C p.G508A CTTCCTCCACCAT . 116.0 49.0 93.0 0.0 . 78 . . . none . . PASS Atlas-SNP NT5C3B 115024 hgsc.bcm.edu hg19 17 39981892 39981892 + Silent SNP C C T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . . NM_052935 exon9 c.G786A p.E262E GTAGCGCTCCCGC . 94.0 43.0 67.0 0.0 . . . . . none . . PASS Atlas-SNP ITGA2B 3674 hgsc.bcm.edu hg19 17 42457409 42457409 + Missense_Mutation SNP C C A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ITGA2B NM_000419 exon17 c.G1713T p.K571N GCTGTGCTTTCCG . 90.0 37.0 67.0 0.0 . 88 . . . none . . PASS Atlas-SNP SCRN2 90507 hgsc.bcm.edu hg19 17 45916949 45916949 + Silent SNP C C A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . SCRN2 NM_138355 exon4 c.G417T p.L139L GTGCTCCAGTAAC . 117.0 33.0 101.0 0.0 . 35 . . . none . . PASS Atlas-SNP KAT7 11143 hgsc.bcm.edu hg19 17 47888871 47888871 + Missense_Mutation SNP A A C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . . NM_007067 exon7 c.A787C p.K263Q AAGGAAAAAGTGG . 515.0 225.0 480.0 0.0 . . . . . none . . PASS Atlas-SNP ST8SIA5 29906 hgsc.bcm.edu hg19 18 44260388 44260388 + Missense_Mutation SNP A A C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ST8SIA5 NM_013305 exon7 c.T748G p.Y250D TGTTGTAGAAGGC . 96.0 51.0 65.0 0.0 . 57 . . . none . . PASS Atlas-SNP ZNF844 284391 hgsc.bcm.edu hg19 19 12187708 12187708 + Silent SNP G G C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ZNF844 NM_001136501 exon4 c.G1773C p.V591V GAGTGTGACAAAG . 155.0 55.0 137.0 0.0 . 69 . . . none . . PASS Atlas-SNP PARD6B 84612 hgsc.bcm.edu hg19 20 49354467 49354467 + Missense_Mutation SNP T T C novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . PARD6B NM_032521 exon2 c.T140C p.L47P GATTACTACAACA . 173.0 52.0 165.0 0.0 . 31 . . . none . . PASS Atlas-SNP DIP2A 23181 hgsc.bcm.edu hg19 21 47986481 47986481 + Missense_Mutation SNP G G T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . DIP2A NM_015151 exon37 c.G4348T p.D1450Y CGGCACGATGCAC . 93.0 4.0 68.0 0.0 . 332 . . . none . . PASS Atlas-SNP TBC1D22A 25771 hgsc.bcm.edu hg19 22 47433038 47433038 + Missense_Mutation SNP C C A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . TBC1D22A NM_014346 exon11 c.C1273A p.L425M AACAACCTGCTGA . 88.0 26.0 64.0 0.0 . 54 . . . none . . PASS Atlas-SNP PHF16 9767 hgsc.bcm.edu hg19 X 46898381 46898381 + Missense_Mutation SNP C C G novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . PHF16 NM_001077445 exon8 c.C886G p.P296A ATGGAACCGATCA . 68.0 46.0 66.0 0.0 . 72 . . . none . . PASS Atlas-SNP UBL4A 8266 hgsc.bcm.edu hg19 X 153713966 153713966 + Missense_Mutation SNP C C T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . UBL4A NM_014235 exon4 c.G386A p.R129H GTCAGGCGACTCA . 65.0 43.0 45.0 0.0 . 12 . . . none . . PASS Atlas-SNP ARHGEF5 7984 hgsc.bcm.edu hg19 7 144062673 144062673 + Frame_Shift_Del DEL A A - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ARHGEF5 NM_005435 exon2 c.2910delG p.R970fs . . 195.0 26.0 180.0 0.0 . 73 . 0.133333 0 none . . PASS Atlas-Indel,Pindel WAC 51322 hgsc.bcm.edu hg19 10 28908467 28908468 + Frame_Shift_Ins INS - - TACT novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . WAC NM_016628 exon14 c.1876_1877insTACT p.I626fs . . 244.0 62.0 232.0 0.0 . 77 . 0.254098 0 none . . PASS Atlas-Indel,Pindel SCAF11 9169 hgsc.bcm.edu hg19 12 46322508 46322509 + Frame_Shift_Ins INS - - A novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . SCAF11 NM_004719 exon11 c.976_977insT p.N326_T327delinsX . . 80.0 28.0 56.0 0.0 . 145 . 0.35 0 none . . PASS Atlas-Indel,Pindel PTPN14 5784 hgsc.bcm.edu hg19 1 214568286 214568292 + Frame_Shift_Del DEL GAATGGT GAATGGT - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 GAATGGT GAATGGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . PTPN14 NM_005401 exon9 c.797_803del p.266_268del . . 62.0 15.0 66.0 0.0 . 168 . 0.241935 0 none . . PASS Atlas-INDEL B4GALT1 2683 hgsc.bcm.edu hg19 9 33167143 33167148 + In_Frame_Del DEL TCAGGA TCAGGA - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 TCAGGA TCAGGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . B4GALT1 NM_001497 exon1 c.21_26del p.7_9del . . 76.0 20.0 66.0 0.0 . 28 . 0.263158 0 none . . PASS Atlas-INDEL FKBP5 2289 hgsc.bcm.edu hg19 6 35604801 35604826 + Frame_Shift_Del DEL ACTAAAGACAAATGGTTCATTTCTAT ACTAAAGACAAATGGTTCATTTCTAT - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 ACTAAAGACAAATGGTTCATTTCTAT ACTAAAGACAAATGGTTCATTTCTAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . FKBP5 NM_001145775 exon4 c.216_241del p.72_81del . . 59.0 10.0 77.0 0.0 . 64 . 0.169492 0 none . . PASS Atlas-Indel,Pindel SYTL2 54843 hgsc.bcm.edu hg19 11 85416053 85416053 + Frame_Shift_Del DEL T T - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 SYTL2_ENST00000316356,colon,carcinoma,0,2 SYTL2 NM_206927 exon9 c.3137delT p.I1046fs . . 103.0 36.0 96.0 0.0 . 231 . 0.349515 0 none . . PASS Atlas-Indel,Pindel CDH1 999 hgsc.bcm.edu hg19 16 68867229 68867229 + Frame_Shift_Del DEL C C - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . CDH1 NM_004360 exon16 c.2475delG p.P825fs . . 161.0 44.0 59.0 0.0 . 535 . 0.273292 0 none . . PASS Atlas-Indel,Pindel IARS2 55699 hgsc.bcm.edu hg19 1 220316411 220316411 + Frame_Shift_Del DEL A A - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . IARS2 NM_018060 exon21 c.2685delC p.G895fs . . 146.0 40.0 106.0 0.0 . 106 . 0.273973 0 none . . PASS Atlas-Indel,Pindel SCN8A 6334 hgsc.bcm.edu hg19 12 52201156 52201161 + In_Frame_Del DEL GGAAGG GGAAGG - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 GGAAGG GGAAGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . SCN8A NM_014191 exon27 c.5885_5890del p.1962_1964del . . 349.0 104.0 343.0 0.0 . 331 . 0.297994 0 none . . PASS Atlas-Indel,Pindel CHRNA4 1137 hgsc.bcm.edu hg19 20 61981808 61981808 + Frame_Shift_Del DEL G G - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . CHRNA4 NM_000744 exon5 c.956delT p.L319fs . . 136.0 49.0 117.0 0.0 . 98 . 0.360294 0 none . . PASS Atlas-Indel,Pindel CUL3 8452 hgsc.bcm.edu hg19 2 225360561 225360561 + Frame_Shift_Del DEL T T - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . CUL3 NM_001257198 exon13 c.1849delT p.Y617fs . . 109.0 43.0 118.0 0.0 . 96 . 0.394495 0 none . . PASS Atlas-Indel,Pindel B4GALT1 2683 hgsc.bcm.edu hg19 9 33167151 33167151 + Frame_Shift_Del DEL G G - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . B4GALT1 NM_001497 exon1 c.18delG p.P6fs . . 77.0 20.0 71.0 0.0 . 28 . 0.25974 0 none . . PASS Atlas-INDEL B4GALNT2 124872 hgsc.bcm.edu hg19 17 47219412 47219413 + Frame_Shift_Del DEL TC TC - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 TC TC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . B4GALNT2 NM_153446 exon3 c.410_411del p.137_137del . . 96.0 31.0 104.0 0.0 . 67 . 0.322917 0 none . . PASS Atlas-Indel,Pindel ILVBL 10994 hgsc.bcm.edu hg19 19 15230250 15230250 + Frame_Shift_Del DEL G G - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . ILVBL NM_006844 exon8 c.894delA p.P298fs . . 228.0 79.0 201.0 0.0 . 54 . 0.346491 0 none . . PASS Atlas-Indel,Pindel SHPRH 257218 hgsc.bcm.edu hg19 6 146215295 146215296 + Frame_Shift_Ins INS - - T novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . SHPRH NM_173082 exon27 c.4698_4699insA p.K1566fs . . 86.0 33.0 81.0 0.0 . 169 . 0.383721 0 none . . PASS Atlas-Indel,Pindel NCKAP1L 3071 hgsc.bcm.edu hg19 12 54930731 54930733 + In_Frame_Del DEL ACA ACA - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 ACA ACA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . NCKAP1L NM_005337 exon29 c.3076_3078del p.1026_1026del . . 47.0 17.0 66.0 0.0 . 180 . 0.361702 0 none . . PASS Atlas-Indel,Pindel POTEH 23784 hgsc.bcm.edu hg19 22 16258291 16258294 + Frame_Shift_Del DEL ATTT ATTT - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 ATTT ATTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . POTEH NM_001136213 exon10 c.1531_1534del p.511_512del . . 886.0 61.0 783.0 0.0 . 114 . 0.069 . none . . PASS Pindel B4GALT1 2683 hgsc.bcm.edu hg19 9 33167143 33167151 + In_Frame_Del DEL TCAGGAGCG TCAGGAGCG - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 TCAGGAGCG TCAGGAGCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . B4GALT1 NM_001497 exon1 c.18_26del p.6_9del . . 80.0 17.0 70.0 0.0 . 28 . 0.213 . none . . PASS Pindel NAA15 80155 hgsc.bcm.edu hg19 4 140291525 140291525 + Frame_Shift_Del DEL A A - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . NAA15 NM_057175 exon15 c.1913delC p.P638fs . . 673.0 113.0 577.0 0.0 . 88 . 0.168 . none . . PASS Pindel UGT3A2 167127 hgsc.bcm.edu hg19 5 36049438 36049439 + Frame_Shift_Del DEL AT AT - novel TCGA-B9-A8YI-01A-21D-A36X-10 TCGA-B9-A8YI-10A-01D-A370-10 AT AT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 15b4b55b-1ee7-4b50-838e-95aa7d2fcd51 7aa75db8-fcf8-49cb-b097-27dc79933907 . UGT3A2 NM_174914 exon4 c.396_397del p.132_133del . . 159.0 44.0 134.0 0.0 . 117 . 0.277 . none . . PASS Pindel