Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm ALPL 249 hgsc.bcm.edu hg19 1 21889674 21889674 + Silent SNP C C A rs201342272 TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . ALPL NM_000478 exon5 c.C369A p.A123A GAAGGCCAATGAG . 179.0 71.0 263.0 0.0 . 50 . . . weak C|0.999;A|0.001 0.001 PASS Atlas-SNP FAM46B 115572 hgsc.bcm.edu hg19 1 27333078 27333078 + Missense_Mutation SNP A A T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 FAM46B,NS,carcinoma,0,1 FAM46B NM_052943 exon2 c.T635A p.F212Y AATTCAAACTGGC . 53.0 16.0 96.0 0.0 . 44 . . . none . . PASS Atlas-SNP C1orf94 84970 hgsc.bcm.edu hg19 1 34643683 34643683 + Missense_Mutation SNP G G C novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . C1orf94 NM_001134734 exon1 c.G293C p.R98T CTCTAAGAGGCAA . 77.0 24.0 133.0 0.0 . 156 . . . none . . PASS Atlas-SNP ZCCHC11 23318 hgsc.bcm.edu hg19 1 52897102 52897102 + Missense_Mutation SNP G G T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . ZCCHC11 NM_001009881 exon28 c.C4294A p.Q1432K ATGGCTGAGGCTG . 60.0 19.0 88.0 0.0 . 151 . . . none . . PASS Atlas-SNP RABIF 5877 hgsc.bcm.edu hg19 1 202850297 202850297 + Missense_Mutation SNP C C T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . RABIF NM_002871 exon2 c.G181A p.D61N CGCCGTCAGGATT . 48.0 18.0 63.0 0.0 . 11 . . . none . . PASS Atlas-SNP CENPF 1063 hgsc.bcm.edu hg19 1 214826247 214826247 + Missense_Mutation SNP T T C novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . CENPF NM_016343 exon16 c.T8237C p.I2746T TGGAGATAGACCT . 120.0 25.0 101.0 0.0 . 321 . . . none . . PASS Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228511117 228511117 + Missense_Mutation SNP G G A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . OBSCN NM_001271223 exon67 c.G18333A p.M6111I GCCCATGCCCAGT . 102.0 23.0 112.0 0.0 . 2142 . . . none . . PASS Atlas-SNP OR2W3 343171 hgsc.bcm.edu hg19 1 248059782 248059782 + Silent SNP G G A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . OR2W3 NM_001001957 exon1 c.G894A p.K298K GGTGAAGGGGGCA . 80.0 5.0 111.0 0.0 . 113 . . . none . . PASS Atlas-SNP LRPPRC 10128 hgsc.bcm.edu hg19 2 44116985 44116985 + Missense_Mutation SNP G G A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . LRPPRC NM_133259 exon37 c.C4016T p.A1339V TACAGTGCTTTAG . 219.0 48.0 243.0 0.0 . 105 . . . none . . PASS Atlas-SNP LRPPRC 10128 hgsc.bcm.edu hg19 2 44116986 44116986 + Missense_Mutation SNP C C G novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . LRPPRC NM_133259 exon37 c.G4015C p.A1339P ACAGTGCTTTAGC . 217.0 48.0 244.0 0.0 . 105 . . . none . . PASS Atlas-SNP ROBO2 6092 hgsc.bcm.edu hg19 3 77671536 77671536 + Missense_Mutation SNP A A T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . ROBO2 NM_002942 exon23 c.A3713T p.D1238V CACTGGACCAGAC . 48.0 19.0 70.0 0.0 . 527 . . . none . . PASS Atlas-SNP ATP6V1A 523 hgsc.bcm.edu hg19 3 113505224 113505224 + Missense_Mutation SNP T T C novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 ATP6V1A,NS,malignant_melanoma,0,1 ATP6V1A NM_001690 exon6 c.T710C p.L237P ATGCCCTTTTTCC . 88.0 4.0 102.0 0.0 . 71 . . . none . . PASS Atlas-SNP AMOTL2 51421 hgsc.bcm.edu hg19 3 134078995 134078995 + Missense_Mutation SNP A A C novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . AMOTL2 NM_016201 exon7 c.T1836G p.N612K ACCCTCATTGAAG . 62.0 19.0 78.0 0.0 . 52 . . . none . . PASS Atlas-SNP SLC25A36 55186 hgsc.bcm.edu hg19 3 140675502 140675502 + Missense_Mutation SNP G G A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . SLC25A36 NM_018155 exon2 c.G175A p.V59I AACCGAGTAGTGT . 73.0 24.0 85.0 0.0 . 24 . . . none . . PASS Atlas-SNP MED12L 116931 hgsc.bcm.edu hg19 3 151107816 151107816 + Missense_Mutation SNP T T G novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . MED12L NM_053002 exon36 c.T5396G p.I1799S CGCCTATCTCCTC . 88.0 37.0 101.0 0.0 . 271 . . . none . . PASS Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195516343 195516343 + Missense_Mutation SNP C C A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . MUC4 NM_018406 exon2 c.G2108T p.G703V GTGTGACCATCCC . 84.0 19.0 115.0 0.0 . 1505 . . . none . . PASS Atlas-SNP TLR10 81793 hgsc.bcm.edu hg19 4 38776735 38776735 + Missense_Mutation SNP G G T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . TLR10 NM_001017388 exon2 c.C477A p.F159L TTTCTGGAAATCT . 43.0 9.0 41.0 0.0 . 87 . . . none . . PASS Atlas-SNP SYNPO2 171024 hgsc.bcm.edu hg19 4 119952865 119952865 + Missense_Mutation SNP T T A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . SYNPO2 NM_001128934 exon4 c.T2935A p.F979I TTTACTTTCCAAC . 140.0 28.0 129.0 0.0 . 353 . . . none . . PASS Atlas-SNP TENM3 55714 hgsc.bcm.edu hg19 4 183245385 183245385 + Missense_Mutation SNP C C A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . . NM_001080477 exon1 c.C212A p.A71E GAGAAGCAGACGA . 66.0 9.0 58.0 0.0 . . . . . none . . PASS Atlas-SNP FAT1 2195 hgsc.bcm.edu hg19 4 187517964 187517964 + Missense_Mutation SNP C C G novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . FAT1 NM_005245 exon25 c.G12730C p.D4244H GTATGTCTGAGTA . 97.0 26.0 90.0 0.0 . 500 . . . none . . PASS Atlas-SNP TRIP13 9319 hgsc.bcm.edu hg19 5 908120 908120 + Silent SNP C C T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . TRIP13 NM_004237 exon8 c.C690T p.T230T GGTAACCAAGATG . 123.0 38.0 96.0 0.0 . 41 . . . none . . PASS Atlas-SNP CDH12 1010 hgsc.bcm.edu hg19 5 21752166 21752166 + Missense_Mutation SNP T T C novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . CDH12 NM_004061 exon15 c.A2065G p.I689V TGCGAATTTTGTT . 221.0 60.0 203.0 0.0 . 238 . . . none . . PASS Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56504731 56504731 + Missense_Mutation SNP C C T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . DST NM_001723 exon5 c.G1004A p.S335N ACCTCACTGATTT . 81.0 30.0 98.0 0.0 . 1427 . . . none . . PASS Atlas-SNP RIMS1 22999 hgsc.bcm.edu hg19 6 72960096 72960096 + Missense_Mutation SNP C C G novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . RIMS1 NM_014989 exon13 c.C2305G p.L769V ACAGATCTACCTG . 90.0 14.0 71.0 0.0 . 278 . . . none . . PASS Atlas-SNP VGLL2 245806 hgsc.bcm.edu hg19 6 117591730 117591730 + Missense_Mutation SNP G G T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . VGLL2 NM_182645 exon3 c.G416T p.R139L GCCAGCGCAGCTT . 53.0 4.0 72.0 0.0 . 18 . . . none . . PASS Atlas-SNP C6orf170 221322 hgsc.bcm.edu hg19 6 121433801 121433801 + Nonsense_Mutation SNP G G T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . C6orf170 NM_152730 exon29 c.C3174A p.C1058X TTGCAGGCAGACT . 67.0 4.0 54.0 0.0 . 146 . . . none . . PASS Atlas-SNP EGFR 1956 hgsc.bcm.edu hg19 7 55272975 55272975 + Missense_Mutation SNP A A G novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . EGFR NM_005228 exon28 c.A3298G p.R1100G CCCAAAAGGCCCG . 103.0 5.0 112.0 0.0 . 20426 . . . none . . PASS Atlas-SNP MUC12 10071 hgsc.bcm.edu hg19 7 100646199 100646199 + Missense_Mutation SNP T T C rs4632981 TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 MUC12,NS,carcinoma,0,1 MUC12 NM_001164462 exon2 c.T12355C p.F4119L ACACACTTTTCTG . 2.0 2.0 2.0 0.0 . 140 . . . weak C|1.000;|0.000 1.000 PASS Atlas-SNP TMEM67 91147 hgsc.bcm.edu hg19 8 94805453 94805453 + Missense_Mutation SNP G G C novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . TMEM67 NM_153704 exon16 c.G1603C p.A535P GGGCTAGCTGTTT . 116.0 31.0 101.0 0.0 . 187 . . . none . . PASS Atlas-SNP RECK 8434 hgsc.bcm.edu hg19 9 36091304 36091304 + Missense_Mutation SNP G G T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . RECK NM_021111 exon10 c.G1049T p.C350F TGGGCTGTAGAAA . 100.0 4.0 137.0 0.0 . 73 . . . none . . PASS Atlas-SNP DNAJC25 548645 hgsc.bcm.edu hg19 9 114412019 114412019 + Missense_Mutation SNP A A G novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . DNAJC25 NM_001015882 exon3 c.A776G p.Y259C GCTCATATATAGT . 178.0 41.0 138.0 0.0 . 20 . . . none . . PASS Atlas-SNP MLLT10 8028 hgsc.bcm.edu hg19 10 21970293 21970293 + Missense_Mutation SNP T T A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . MLLT10 NM_001195626 exon11 c.T1654A p.C552S GGAGCTTGCCCAA . 97.0 29.0 88.0 0.0 . 183 . . . none . . PASS Atlas-SNP ENKUR 219670 hgsc.bcm.edu hg19 10 25288439 25288439 + Missense_Mutation SNP G G T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 ENKUR,NS,carcinoma,-2,1 ENKUR NM_145010 exon2 c.C114A p.D38E TTGCATGTCATCT . 86.0 19.0 72.0 0.0 . 30 . . . none . . PASS Atlas-SNP HK1 3098 hgsc.bcm.edu hg19 10 71136714 71136714 + Missense_Mutation SNP G G T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . HK1 NM_033498 exon11 c.G912T p.M304I TGGCATGTACTTG . 255.0 59.0 236.0 0.0 . 170 . . . none . . PASS Atlas-SNP GBF1 8729 hgsc.bcm.edu hg19 10 104103846 104103846 + Missense_Mutation SNP T T G novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . GBF1 NM_001199378 exon4 c.T202G p.F68V CGACCTTTTCTGG . 116.0 27.0 82.0 0.0 . 142 . . . none . . PASS Atlas-SNP MUC2 4583 hgsc.bcm.edu hg19 11 1093271 1093271 + Missense_Mutation SNP C C G novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 MUC2_ENST00000441003,NS,carcinoma,-1,4 MUC2 NM_002457 exon30 c.C5090G p.T1697R CCCCAACATCGAC . 94.0 8.0 82.0 0.0 . 614 . . . none . . PASS Atlas-SNP OR52M1 119772 hgsc.bcm.edu hg19 11 4567069 4567069 + Missense_Mutation SNP A A T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . OR52M1 NM_001004137 exon1 c.A649T p.I217F GTGGCTATTGCTG . 144.0 32.0 155.0 0.0 . 53 . . . none . . PASS Atlas-SNP RIC3 79608 hgsc.bcm.edu hg19 11 8132577 8132577 + Missense_Mutation SNP C C T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . RIC3 NM_001206671 exon6 c.G778A p.E260K CTATTTCTTCAGC . 231.0 47.0 192.0 0.0 . 42 . . . none . . PASS Atlas-SNP LRP4 4038 hgsc.bcm.edu hg19 11 46895104 46895104 + Missense_Mutation SNP C C G novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . LRP4 NM_002334 exon29 c.G4270C p.G1424R CTCGCCCGATCAC . 84.0 25.0 78.0 0.0 . 160 . . . none . . PASS Atlas-SNP BRMS1 25855 hgsc.bcm.edu hg19 11 66108763 66108763 + Missense_Mutation SNP T T A rs199933125 byfrequency;alternate_allele TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . BRMS1 NM_015399 exon4 c.A272T p.E91V ACTTCCTCCAGCC . 72.0 15.0 80.0 0.0 . 42 . . . alt T|0.993;C|0.007 . PASS Atlas-SNP TAOK3 51347 hgsc.bcm.edu hg19 12 118651868 118651868 + Missense_Mutation SNP A A T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . TAOK3 NM_016281 exon10 c.T691A p.Y231N TGTGATATAAGGC . 83.0 17.0 58.0 0.0 . 151 . . . none . . PASS Atlas-SNP G2E3 55632 hgsc.bcm.edu hg19 14 31081505 31081505 + Silent SNP G G A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . G2E3 NM_017769 exon13 c.G1593A p.T531T TATAACGACATTA . 175.0 40.0 183.0 0.0 . 82 . . . none . . PASS Atlas-SNP FANCM 57697 hgsc.bcm.edu hg19 14 45645152 45645152 + Missense_Mutation SNP C C G novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . FANCM NM_020937 exon14 c.C3195G p.C1065W AAGTTGCCTTTAT . 123.0 31.0 87.0 0.0 . 225 . . . none . . PASS Atlas-SNP DLGAP5 9787 hgsc.bcm.edu hg19 14 55642723 55642723 + Missense_Mutation SNP C C A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . DLGAP5 NM_014750 exon9 c.G1063T p.A355S TTGTTGCTTGAGA . 73.0 10.0 71.0 0.0 . 84 . . . none . . PASS Atlas-SNP AP4E1 23431 hgsc.bcm.edu hg19 15 51285700 51285700 + Missense_Mutation SNP G G T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . AP4E1 NM_007347 exon17 c.G2224T p.D742Y AATGTAGATCAAG . 56.0 8.0 59.0 0.0 . 78 . . . none . . PASS Atlas-SNP CHD2 1106 hgsc.bcm.edu hg19 15 93541851 93541851 + Missense_Mutation SNP G G T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . CHD2 NM_001271 exon31 c.G4008T p.E1336D GGAAGAGGTGAGT . 74.0 4.0 74.0 0.0 . 280 . . . none . . PASS Atlas-SNP CCDC64B 146439 hgsc.bcm.edu hg19 16 3078701 3078701 + Missense_Mutation SNP T T A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . CCDC64B NM_001103175 exon7 c.A1238T p.K413M GCTTACTTGTTCA . 70.0 16.0 72.0 0.0 . 19 . . . none . . PASS Atlas-SNP GTF3C1 2975 hgsc.bcm.edu hg19 16 27549611 27549611 + Silent SNP C C T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . GTF3C1 NM_001520 exon3 c.G498A p.E166E ATCCCCCTCCTGG . 74.0 20.0 79.0 0.0 . 210 . . . none . . PASS Atlas-SNP CDH1 999 hgsc.bcm.edu hg19 16 68853183 68853183 + Silent SNP A A C novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . CDH1 NM_004360 exon11 c.A1566C p.T522T GTTCAGATATCGG . 92.0 22.0 116.0 0.0 . 535 . . . none . . PASS Atlas-SNP CPNE7 27132 hgsc.bcm.edu hg19 16 89650107 89650107 + Silent SNP T T A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . CPNE7 NM_014427 exon5 c.T585A p.I195I ACAGATTGTGGCC . 107.0 29.0 120.0 0.0 . 56 . . . none . . PASS Atlas-SNP ELP5 23587 hgsc.bcm.edu hg19 17 7157996 7157996 + Missense_Mutation SNP T T C novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . . NM_203414 exon4 c.T331C p.C111R GCCATGTGCAAGA . 71.0 19.0 62.0 0.0 . . . . . none . . PASS Atlas-SNP ATPAF2 91647 hgsc.bcm.edu hg19 17 17925092 17925092 + Missense_Mutation SNP G G A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . ATPAF2 NM_145691 exon6 c.C583T p.H195Y CCAGGTGGCTGAC . 125.0 34.0 126.0 0.0 . 15 . . . none . . PASS Atlas-SNP DYM 54808 hgsc.bcm.edu hg19 18 46798650 46798650 + Silent SNP C C G novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 DYM,NS,carcinoma,0,1 DYM NM_017653 exon11 c.G1149C p.L383L ATGATACAGAATC . 123.0 35.0 151.0 1.0 . 52 . . . none . . PASS Atlas-SNP HMHA1 23526 hgsc.bcm.edu hg19 19 1082889 1082889 + Silent SNP G G T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . HMHA1 NM_001258328 exon20 c.G2616T p.L872L AGGGCTGGCCAAG . 49.0 19.0 49.0 0.0 . 78 . . . none . . PASS Atlas-SNP MRI1 84245 hgsc.bcm.edu hg19 19 13883025 13883025 + Missense_Mutation SNP A A T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . MRI1 NM_001031727 exon6 c.A1040T p.E347V CCCCTGAGGAGCT . 208.0 48.0 217.0 0.0 . 35 . . . none . . PASS Atlas-SNP USHBP1 83878 hgsc.bcm.edu hg19 19 17366410 17366410 + Silent SNP G G A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . USHBP1 NM_031941 exon10 c.C1476T p.A492A CGCCAGGGCCTCC . 79.0 14.0 79.0 0.0 . 85 . . . none . . PASS Atlas-SNP DMKN 93099 hgsc.bcm.edu hg19 19 36002420 36002420 + Missense_Mutation SNP C C T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 DMKN,colon,carcinoma,0,1 DMKN NM_001126058 exon5 c.G811A p.G271S TGCTGCCACCACT . 26.0 3.0 22.0 2.0 . 116 . . . none . . PASS Atlas-SNP CBLC 23624 hgsc.bcm.edu hg19 19 45281521 45281521 + Missense_Mutation SNP C C G novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . CBLC NM_001130852 exon1 c.C333G p.F111L GCTCTTCCGGGCG . 19.0 5.0 18.0 0.0 . 41 . . . none . . PASS Atlas-SNP ZNF577 84765 hgsc.bcm.edu hg19 19 52376955 52376955 + Silent SNP A A G novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . ZNF577 NM_032679 exon7 c.T288C p.F96F GATTACAAAACCT . 59.0 13.0 41.0 0.0 . 63 . . . none . . PASS Atlas-SNP ZNF606 80095 hgsc.bcm.edu hg19 19 58489700 58489700 + Missense_Mutation SNP T T C novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . ZNF606 NM_025027 exon7 c.A2348G p.Q783R TTTCTCTGGTGTT . 152.0 39.0 134.0 0.0 . 155 . . . none . . PASS Atlas-SNP BPIFB6 128859 hgsc.bcm.edu hg19 20 31627181 31627181 + Missense_Mutation SNP C C A rs370022331 alternate_allele TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . . NM_174897 exon10 c.C929A p.P310H CAAAGCCCTTGAC . 88.0 33.0 112.0 0.0 . . . . . alt . . PASS Atlas-SNP TTPAL 79183 hgsc.bcm.edu hg19 20 43108944 43108944 + Missense_Mutation SNP A A G novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . TTPAL NM_001039199 exon2 c.A305G p.Y102C TCAACTACCACAG . 153.0 49.0 167.0 0.0 . 31 . . . none . . PASS Atlas-SNP ADA 100 hgsc.bcm.edu hg19 20 43251682 43251682 + Missense_Mutation SNP G G A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . ADA NM_000022 exon7 c.C644T p.A215V TCCCCGGCGTGGA . 98.0 20.0 112.0 0.0 . 42 . . . none . . PASS Atlas-SNP HELZ2 85441 hgsc.bcm.edu hg19 20 62201870 62201870 + Missense_Mutation SNP G G A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . . NM_001037335 exon4 c.C557T p.A186V TGGACGGCAAACG . 81.0 4.0 93.0 0.0 . . . . . none . . PASS Atlas-SNP KCNE2 9992 hgsc.bcm.edu hg19 21 35743124 35743124 + Missense_Mutation SNP C C T rs199473367 TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 KCNE2,colon,carcinoma,0,1 KCNE2 NM_172201 exon2 c.C347T p.A116V TTGGTGCGGCTGG . 99.0 26.0 97.0 0.0 . 13 . . . weak . . PASS Atlas-SNP USP9X 8239 hgsc.bcm.edu hg19 X 41043810 41043810 + Missense_Mutation SNP C C T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . USP9X NM_001039591 exon23 c.C3440T p.A1147V GGGGTGCCTACCT . 143.0 72.0 154.0 0.0 . 385 . . . none . . PASS Atlas-SNP UPF3B 65109 hgsc.bcm.edu hg19 X 118977251 118977251 + Silent SNP T T C novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . UPF3B NM_023010 exon5 c.A483G p.R161R AAACTTTCTATAT . 31.0 17.0 23.0 0.0 . 74 . . . none . . PASS Atlas-SNP NDC80 10403 hgsc.bcm.edu hg19 18 2610806 2610806 + Frame_Shift_Del DEL A A - novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . NDC80 NM_006101 exon16 c.1736delG p.G579fs . . 157.0 36.0 151.0 0.0 . 62 . 0.229299 0 none . . PASS Atlas-Indel,Pindel LSM1 27257 hgsc.bcm.edu hg19 8 38027436 38027436 + Frame_Shift_Del DEL C C - novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . LSM1 NM_014462 exon3 c.116delC p.A39fs . . 129.0 33.0 122.0 0.0 . 14 . 0.255814 0 none . . PASS Atlas-Indel,Pindel RBM28 55131 hgsc.bcm.edu hg19 7 127958110 127958111 + In_Frame_Ins INS - - GAC novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . RBM28 NM_018077 exon15 c.1613_1614insGTC p.Q538delinsRQ . . 88.0 19.0 101.0 0.0 . 71 . 0.215909 0 none . . PASS Atlas-Indel,Pindel KCNJ15 3772 hgsc.bcm.edu hg19 21 39671646 39671649 + Frame_Shift_Del DEL TTGA TTGA - novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 TTGA TTGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . KCNJ15 NM_170736 exon3 c.462_465del p.154_155del . . 105.0 28.0 115.0 0.0 . 43 . 0.266667 0 none . . PASS Atlas-Indel,Pindel GPR85 54329 hgsc.bcm.edu hg19 7 112724144 112724146 + In_Frame_Del DEL ATC ATC - novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 ATC ATC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 GPR85,NS,carcinoma,0,1 GPR85 NM_001146265 exon3 c.632_634del p.211_212del . . 63.0 14.0 84.0 0.0 . 49 . 0.222222 0 none . . PASS Atlas-INDEL AKD1 221264 hgsc.bcm.edu hg19 6 109977966 109977966 + Frame_Shift_Del DEL G G - novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . AKD1 NM_001145128 exon8 c.753delT p.T251fs . . 103.0 32.0 96.0 0.0 . 223 . 0.31068 0 none . . PASS Atlas-Indel,Pindel C19orf40 91442 hgsc.bcm.edu hg19 19 33464971 33464972 + Frame_Shift_Ins INS - - A novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . C19orf40 NM_152266 exon4 c.249_250insA p.N83fs . . 170.0 43.0 145.0 0.0 . 21 . 0.252941 0 none . . PASS Atlas-Indel,Pindel SPTA1 6708 hgsc.bcm.edu hg19 1 158639217 158639217 + Frame_Shift_Del DEL G G - novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . SPTA1 NM_003126 exon14 c.1815delA p.A605fs . . 73.0 19.0 65.0 0.0 . 720 . 0.260274 0 none . . PASS Atlas-Indel,Pindel DOK7 285489 hgsc.bcm.edu hg19 4 3478120 3478121 + Frame_Shift_Ins INS - - GGCTA novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . DOK7 NM_001164673 exon4 c.383_384insGGCTA p.P128fs . . 86.0 21.0 91.0 0.0 . 44 . 0.244186 0 none . . PASS Atlas-Indel,Pindel SRD5A1 6715 hgsc.bcm.edu hg19 5 6663046 6663047 + Frame_Shift_Ins INS - - T novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . SRD5A1 NM_001047 exon4 c.680_681insT p.C227fs . . 91.0 23.0 92.0 0.0 . 31 . 0.252747 0 none . . PASS Atlas-Indel,Pindel EFCAB13 124989 hgsc.bcm.edu hg19 17 45468874 45468875 + Frame_Shift_Ins INS - - G novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . . NM_152347 exon15 c.1654_1655insG p.C552fs . . 342.0 63.0 277.0 0.0 . . . 0.184 . none . . PASS Pindel GPR174 84636 hgsc.bcm.edu hg19 X 78426874 78426874 + Frame_Shift_Del DEL T T - novel TCGA-B9-A69E-01A-11D-A31X-10 TCGA-B9-A69E-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc7baae9-8c95-40f5-b778-ca1598e9373d f4799bdc-b207-4053-9a4b-5a26ebf8ab91 . GPR174 NM_032553 exon1 c.369delC p.P123fs . . 144.0 59.0 128.0 0.0 . 79 . 0.410 . none . . PASS Pindel