Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
MDGA1	266727	hgsc.bcm.edu	hg19	6	37606390	37606390	+	Missense_Mutation	SNP	C	C	T	rs376783889	bycluster	TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	MDGA1,NS,carcinoma,0,1	MDGA1	NM_153487	exon15	c.G2590A	p.A864T	ACCAGGCGTGCGT	.	69.0	3.0	92.0	0.0	.	104	.	.	.	weak	.	.	PASS	Atlas-SNP
TSPAN33	340348	hgsc.bcm.edu	hg19	7	128804350	128804350	+	Silent	SNP	C	C	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	TSPAN33	NM_178562	exon5	c.C399A	p.A133A	CAATGCCATTGTG	.	76.0	48.0	54.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
P2RY2	5029	hgsc.bcm.edu	hg19	11	72945937	72945937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	P2RY2	NM_176071	exon3	c.C733T	p.R245C	TCCGTGCGCACCA	.	33.0	13.0	51.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	hg19	12	7045933	7045933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	ATN1	NM_001007026	exon5	c.G1503T	p.Q501H	GCAGCAGCAGCAT	.	109.0	10.0	78.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
KIF26A	26153	hgsc.bcm.edu	hg19	14	104639376	104639376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	KIF26A	NM_015656	exon8	c.G1483A	p.A495T	CCCTGCGCCATCT	.	76.0	6.0	84.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
ALKBH7	84266	hgsc.bcm.edu	hg19	19	6374248	6374248	+	Missense_Mutation	SNP	G	G	T	rs377101608	alternate_allele	TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	ALKBH7	NM_032306	exon2	c.G239T	p.R80L	AGTCGCGCTGGTC	.	109.0	5.0	125.0	0.0	.	18	.	.	.	alt	.	.	PASS	Atlas-SNP
GRIK5	2901	hgsc.bcm.edu	hg19	19	42525580	42525580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	GRIK5_ENST00000301218,NS,carcinoma,0,2	GRIK5	NM_002088	exon14	c.C1744T	p.R582C	GGGGGCGTGCCCG	.	62.0	16.0	54.0	0.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
COPS4	51138	hgsc.bcm.edu	hg19	4	83996480	83996480	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	COPS4	NM_016129	exon10	c.1117delC	p.Q373fs	.	.	71.0	15.0	79.0	0.0	.	31	.	0.211268	0	none	.	.	PASS	Atlas-Indel,Pindel
PIK3R4	30849	hgsc.bcm.edu	hg19	3	130425829	130425831	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	PIK3R4	NM_014602	exon11	c.2683_2685del	p.895_895del	.	.	112.0	12.0	150.0	0.0	.	145	.	0.107143	0	none	.	.	PASS	Atlas-Indel,Pindel