Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm TAS1R2 80834 hgsc.bcm.edu hg19 1 19166252 19166252 + Silent SNP C C G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . TAS1R2 NM_152232 exon6 c.G2361C p.L787L GGTGACCAGCACC . 37.0 16.0 50.0 0.0 . 134 . . . none . . PASS Atlas-SNP AGO1 26523 hgsc.bcm.edu hg19 1 36354062 36354062 + Silent SNP G G A rs79428335 bycluster;alternate_allele TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . . NM_012199 exon2 c.G60A p.V20V GCAGGTGTTCCAG . 107.0 30.0 124.0 0.0 . . . . . alt . . PASS Atlas-SNP RPRD2 23248 hgsc.bcm.edu hg19 1 150390094 150390094 + Silent SNP T T C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . RPRD2 NM_015203 exon2 c.T228C p.N76N TTTGAATCTCTTT . 284.0 97.0 298.0 0.0 . 189 . . . none . . PASS Atlas-SNP SLC9C2 284525 hgsc.bcm.edu hg19 1 173545857 173545857 + Missense_Mutation SNP A A G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 SLC9A11,colon,carcinoma,0,1 . NM_178527 exon8 c.T845C p.V282A AGTCCTACAGCGG . 59.0 3.0 67.0 0.0 . . . . . none . . PASS Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186158954 186158954 + Missense_Mutation SNP A A G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . HMCN1 NM_031935 exon107 c.A16852G p.I5618V GGGACCATTGAAT . 115.0 31.0 119.0 0.0 . 797 . . . none . . PASS Atlas-SNP LRRN2 10446 hgsc.bcm.edu hg19 1 204588079 204588079 + Missense_Mutation SNP T T C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . LRRN2 NM_006338 exon3 c.A1042G p.S348G AGGCACTGAGAGC . 37.0 10.0 45.0 0.0 . 81 . . . none . . PASS Atlas-SNP URB2 9816 hgsc.bcm.edu hg19 1 229771856 229771856 + Missense_Mutation SNP C C T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 URB2,NS,carcinoma,0,2 URB2 NM_014777 exon4 c.C1496T p.S499F TACTCTCTGCATG . 174.0 57.0 199.0 0.0 . 152 . . . none . . PASS Atlas-SNP SLC3A1 6519 hgsc.bcm.edu hg19 2 44507998 44507998 + Missense_Mutation SNP G G T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . SLC3A1 NM_000341 exon2 c.G574T p.D192Y ATGGAAGATTTTG . 125.0 37.0 147.0 0.0 . 62 . . . none . . PASS Atlas-SNP PNPT1 87178 hgsc.bcm.edu hg19 2 55908004 55908004 + Missense_Mutation SNP A A G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . PNPT1 NM_033109 exon6 c.T503C p.L168P ATTGCTAGGACAT . 78.0 23.0 123.0 0.0 . 68 . . . none . . PASS Atlas-SNP FANCL 55120 hgsc.bcm.edu hg19 2 58431304 58431304 + Silent SNP A A G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . FANCL NM_018062 exon6 c.T432C p.S144S TCTACCAGAAGCA . 166.0 45.0 197.0 0.0 . 35 . . . none . . PASS Atlas-SNP THNSL2 55258 hgsc.bcm.edu hg19 2 88482283 88482283 + Missense_Mutation SNP A A G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . THNSL2 NM_018271 exon5 c.A868G p.I290V AATGACATCATCC . 88.0 27.0 103.0 0.0 . 66 . . . none . . PASS Atlas-SNP TRIM43 129868 hgsc.bcm.edu hg19 2 96260855 96260855 + Missense_Mutation SNP A A T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . TRIM43 NM_138800 exon3 c.A469T p.N157Y CAGAGAAATCTAT . 46.0 14.0 66.0 0.0 . 51 . . . none . . PASS Atlas-SNP ZEB2 9839 hgsc.bcm.edu hg19 2 145156027 145156027 + Silent SNP G G A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . ZEB2 NM_014795 exon8 c.C2727T p.F909F TGGCATGAAAGTA . 172.0 60.0 240.0 0.0 . 218 . . . none . . PASS Atlas-SNP LY75-CD302 100526664 hgsc.bcm.edu hg19 2 160637446 160637446 + Missense_Mutation SNP T T C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . . NM_001198759 exon36 c.A5165G p.K1722R CATTGCTTTTTCA . 103.0 27.0 116.0 0.0 . . . . . none . . PASS Atlas-SNP UBR3 130507 hgsc.bcm.edu hg19 2 170843265 170843265 + Missense_Mutation SNP C C G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 UBR3_ENST00000272793,NS,carcinoma,0,2 UBR3 NM_172070 exon25 c.C3745G p.R1249G GAAGATCGACCTA . 103.0 29.0 135.0 0.0 . 182 . . . none . . PASS Atlas-SNP EXOSC7 23016 hgsc.bcm.edu hg19 3 45038724 45038724 + Missense_Mutation SNP G G C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . EXOSC7 NM_015004 exon4 c.G400C p.V134L TGCTGGGTTCTCT . 101.0 44.0 85.0 0.0 . 19 . . . none . . PASS Atlas-SNP BOC 91653 hgsc.bcm.edu hg19 3 112991328 112991328 + Missense_Mutation SNP A A C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . BOC NM_033254 exon7 c.A739C p.S247R GGCCAGAGTCTCA . 318.0 73.0 261.0 0.0 . 139 . . . none . . PASS Atlas-SNP RPN1 6184 hgsc.bcm.edu hg19 3 128348859 128348859 + Missense_Mutation SNP C C T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . RPN1 NM_002950 exon5 c.G971A p.G324D CACCCGCCAAAGA . 87.0 41.0 68.0 0.0 . 39 . . . none . . PASS Atlas-SNP ATR 545 hgsc.bcm.edu hg19 3 142268491 142268491 + Missense_Mutation SNP C C A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . ATR NM_001184 exon15 c.G3001T p.D1001Y CAAGATCAGGTAG . 82.0 37.0 64.0 0.0 . 285 . . . none . . PASS Atlas-SNP FBXL5 26234 hgsc.bcm.edu hg19 4 15640266 15640266 + Missense_Mutation SNP T T C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . FBXL5 NM_001193534 exon4 c.A448G p.I150V TTTTAATATCCTT . 65.0 21.0 73.0 0.0 . 52 . . . none . . PASS Atlas-SNP GC 2638 hgsc.bcm.edu hg19 4 72620174 72620174 + Silent SNP G G A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . GC NM_001204307 exon11 c.C1273T p.L425L CACATAGTTCTTG . 54.0 16.0 45.0 0.0 . 132 . . . none . . PASS Atlas-SNP TERT 7015 hgsc.bcm.edu hg19 5 1282605 1282605 + Missense_Mutation SNP T T G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . TERT NM_001193376 exon3 c.A1708C p.K570Q TGTTCTTTTGAAA . 51.0 13.0 79.0 0.0 . 2594 . . . none . . PASS Atlas-SNP CDH6 1004 hgsc.bcm.edu hg19 5 31323226 31323226 + Silent SNP T T G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . CDH6 NM_004932 exon12 c.T2184G p.T728T CCCCACTGCCCCG . 34.0 5.0 39.0 0.0 . 175 . . . none . . PASS Atlas-SNP TRIM36 55521 hgsc.bcm.edu hg19 5 114515696 114515696 + Silent SNP G G A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . TRIM36 NM_001017397 exon1 c.C39T p.I13I TTCCATGATGTAG . 137.0 47.0 162.0 0.0 . 126 . . . none . . PASS Atlas-SNP PCDHGA1 56114 hgsc.bcm.edu hg19 5 140712438 140712438 + Silent SNP A A G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 PCDHGA1_ENST00000517417,colon,carcinoma,0,2 PCDHGA1 NM_018912 exon1 c.A2187G p.G729G TTCGGGAGGCGGC . 98.0 37.0 91.0 0.0 . 397 . . . none . . PASS Atlas-SNP LARS 51520 hgsc.bcm.edu hg19 5 145506033 145506033 + Missense_Mutation SNP T T C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . LARS NM_020117 exon28 c.A2956G p.M986V TCTTCATGTATTT . 86.0 24.0 112.0 0.0 . 100 . . . none . . PASS Atlas-SNP PDGFRB 5159 hgsc.bcm.edu hg19 5 149511592 149511592 + Missense_Mutation SNP G G T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . PDGFRB NM_002609 exon8 c.C1193A p.A398D TGGAAGGCCCGCA . 53.0 11.0 98.0 0.0 . 142 . . . none . . PASS Atlas-SNP PRPF4B 8899 hgsc.bcm.edu hg19 6 4032504 4032504 + Missense_Mutation SNP A A C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . PRPF4B NM_003913 exon2 c.A753C p.K251N AGAGAAAATTGGT . 188.0 79.0 216.0 0.0 . 140 . . . none . . PASS Atlas-SNP MUC21 394263 hgsc.bcm.edu hg19 6 30954340 30954340 + Missense_Mutation SNP A A T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . MUC21 NM_001010909 exon2 c.A388T p.S130C CCCTCCAGTGGGG . 249.0 57.0 255.0 0.0 . 98 . . . none . . PASS Atlas-SNP PKHD1 5314 hgsc.bcm.edu hg19 6 51889440 51889440 + Missense_Mutation SNP C C G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . PKHD1 NM_170724 exon32 c.G5168C p.R1723T CACCCTCTGATGC . 97.0 28.0 114.0 0.0 . 927 . . . none . . PASS Atlas-SNP LIMK1 3984 hgsc.bcm.edu hg19 7 73530183 73530183 + Missense_Mutation SNP G G A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . LIMK1 NM_002314 exon13 c.G1462A p.E488K GTGGACGAGAAGA . 76.0 22.0 70.0 0.0 . 55 . . . none . . PASS Atlas-SNP STYXL1 51657 hgsc.bcm.edu hg19 7 75633079 75633079 + Missense_Mutation SNP T T C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . STYXL1 NM_016086 exon7 c.A694G p.I232V TACCAATGAAGTG . 80.0 47.0 73.0 0.0 . 35 . . . none . . PASS Atlas-SNP STYXL1 51657 hgsc.bcm.edu hg19 7 75643205 75643205 + Missense_Mutation SNP T T C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . STYXL1 NM_016086 exon5 c.A308G p.D103G ACAAGATCTGAGA . 189.0 89.0 165.0 0.0 . 35 . . . none . . PASS Atlas-SNP ZNF786 136051 hgsc.bcm.edu hg19 7 148767681 148767681 + Missense_Mutation SNP G G T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . ZNF786 NM_152411 exon4 c.C2183A p.P728H CTCTCGGGCCTGT . 297.0 138.0 241.0 1.0 . 69 . . . none . . PASS Atlas-SNP GIMAP6 474344 hgsc.bcm.edu hg19 7 150325338 150325338 + Missense_Mutation SNP G G A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . GIMAP6 NM_001244071 exon3 c.C124T p.R42C TAAGACGATGGCT . 155.0 36.0 137.0 0.0 . 60 . . . none . . PASS Atlas-SNP PXDNL 137902 hgsc.bcm.edu hg19 8 52336162 52336162 + Missense_Mutation SNP C C G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . PXDNL NM_144651 exon14 c.G1768C p.V590L TGGTCACAGCAAG . 36.0 17.0 40.0 0.0 . 414 . . . none . . PASS Atlas-SNP TMEM67 91147 hgsc.bcm.edu hg19 8 94797545 94797545 + Silent SNP T T C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . TMEM67 NM_153704 exon12 c.T1227C p.Y409Y TCAATATATTTTG . 228.0 68.0 269.0 0.0 . 187 . . . none . . PASS Atlas-SNP SPATA31C2 645961 hgsc.bcm.edu hg19 9 90744548 90744548 + Missense_Mutation SNP T T C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . . NM_001166137 exon4 c.A3404G p.X1135W AAGGGCTACTGAT . 250.0 52.0 299.0 0.0 . . . . . none . . PASS Atlas-SNP TOR1A 1861 hgsc.bcm.edu hg19 9 132576423 132576423 + Missense_Mutation SNP T T G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . TOR1A NM_000113 exon5 c.A827C p.H276P TTTAGGTGTTTGT . 231.0 69.0 263.0 0.0 . 36 . . . none . . PASS Atlas-SNP WNT8B 7479 hgsc.bcm.edu hg19 10 102239758 102239758 + Missense_Mutation SNP G G A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . WNT8B NM_003393 exon3 c.G230A p.G77E ATGGTGGGCTTCG . 31.0 8.0 49.0 0.0 . 31 . . . none . . PASS Atlas-SNP PRKRIR 5612 hgsc.bcm.edu hg19 11 76062971 76062971 + Missense_Mutation SNP A A T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . PRKRIR NM_004705 exon5 c.T1223A p.L408H TGAAAAAGAACAG . 79.0 22.0 83.0 0.0 . 65 . . . none . . PASS Atlas-SNP SYTL2 54843 hgsc.bcm.edu hg19 11 85445140 85445140 + Missense_Mutation SNP A A T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . SYTL2 NM_001162953 exon6 c.T1232A p.M411K GAAGTCATTGGCT . 156.0 43.0 182.0 0.0 . 231 . . . none . . PASS Atlas-SNP ADAMTS8 11095 hgsc.bcm.edu hg19 11 130284505 130284505 + Missense_Mutation SNP G G T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . ADAMTS8 NM_007037 exon5 c.C1487A p.A496D CCGTCAGCCCAGG . 124.0 39.0 170.0 0.0 . 172 . . . none . . PASS Atlas-SNP ITPR2 3709 hgsc.bcm.edu hg19 12 26553127 26553127 + Silent SNP G G A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . ITPR2 NM_002223 exon53 c.C7464T p.T2488T CAGCACGGTGACA . 229.0 53.0 170.0 0.0 . 270 . . . none . . PASS Atlas-SNP AMHR2 269 hgsc.bcm.edu hg19 12 53824991 53824991 + Missense_Mutation SNP G G C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . AMHR2 NM_020547 exon11 c.G1456C p.D486H CTAGAAGACTGTT . 166.0 83.0 193.0 0.0 . 61 . . . none . . PASS Atlas-SNP WSCD2 9671 hgsc.bcm.edu hg19 12 108641980 108641980 + Missense_Mutation SNP C C T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . WSCD2 NM_014653 exon9 c.C1558T p.R520C TTCAAGCGCTCAG . 95.0 19.0 80.0 0.0 . 125 . . . none . . PASS Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39452997 39452997 + Silent SNP C C G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . FREM2 NM_207361 exon23 c.C8889G p.T2963T AGCGACCAGTTTT . 122.0 35.0 128.0 0.0 . 385 . . . none . . PASS Atlas-SNP MYH6 4624 hgsc.bcm.edu hg19 14 23862897 23862897 + Missense_Mutation SNP T T G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . MYH6 NM_002471 exon22 c.A2906C p.E969A TGCTTCTCCTTCT . 113.0 33.0 142.0 0.0 . 274 . . . none . . PASS Atlas-SNP MYH7 4625 hgsc.bcm.edu hg19 14 23897724 23897724 + Missense_Mutation SNP A A C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . MYH7 NM_000257 exon15 c.T1563G p.I521M GAGGTCAATGCAG . 82.0 6.0 123.0 0.0 . 349 . . . none . . PASS Atlas-SNP RIPK3 11035 hgsc.bcm.edu hg19 14 24805465 24805465 + Silent SNP G G T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . RIPK3 NM_006871 exon10 c.C1473A p.P491P TGGTGGGGGGTGC . 102.0 27.0 138.0 0.0 . 43 . . . none . . PASS Atlas-SNP NR2E3 10002 hgsc.bcm.edu hg19 15 72104834 72104834 + Silent SNP C C T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . NR2E3 NM_016346 exon5 c.C730T p.L244L TCCAGCCTGCCCT . 28.0 10.0 17.0 0.0 . 53 . . . none . . PASS Atlas-SNP PKD1 5310 hgsc.bcm.edu hg19 16 2155892 2155892 + Silent SNP A A G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 PKD1,NS,carcinoma,0,1 PKD1 NM_000296 exon20 c.T7837C p.L2613L GGGCCAACGAGTA . 67.0 4.0 48.0 2.0 . 184 . . . none . . PASS Atlas-SNP MYLK3 91807 hgsc.bcm.edu hg19 16 46766187 46766187 + Silent SNP C C T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . MYLK3 NM_182493 exon4 c.G1395A p.R465R CGGAGCCCTGGCT . 110.0 57.0 70.0 0.0 . 82 . . . none . . PASS Atlas-SNP AMFR 267 hgsc.bcm.edu hg19 16 56435720 56435720 + Missense_Mutation SNP T T C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . AMFR NM_001144 exon8 c.A1010G p.N337S TCATTGTTGACAG . 174.0 85.0 143.0 0.0 . 40 . . . none . . PASS Atlas-SNP SMAD4 4089 hgsc.bcm.edu hg19 18 48581177 48581177 + Missense_Mutation SNP G G A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . SMAD4 NM_005359 exon5 c.G481A p.E161K AAGGATGAATATG . 86.0 19.0 107.0 0.0 . 822 . . . none . . PASS Atlas-SNP SMAD4 4089 hgsc.bcm.edu hg19 18 48581187 48581187 + Missense_Mutation SNP A A G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . SMAD4 NM_005359 exon5 c.A491G p.H164R ATGTGCATGACTT . 102.0 26.0 117.0 0.0 . 822 . . . none . . PASS Atlas-SNP RNF152 220441 hgsc.bcm.edu hg19 18 59483577 59483577 + Missense_Mutation SNP C C A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . RNF152 NM_173557 exon2 c.G120T p.Q40H CATCTGCTGCAGG . 70.0 29.0 74.0 0.0 . 37 . . . none . . PASS Atlas-SNP FZR1 51343 hgsc.bcm.edu hg19 19 3527659 3527659 + Silent SNP C C A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . FZR1 NM_001136198 exon6 c.C501A p.P167P GAAACCCACCCGC . 42.0 9.0 60.0 0.0 . 42 . . . none . . PASS Atlas-SNP MAP2K2 5605 hgsc.bcm.edu hg19 19 4117623 4117623 + Missense_Mutation SNP T T G novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . MAP2K2 NM_030662 exon2 c.A97C p.N33H CCAGGTTTGCCCT . 64.0 23.0 103.0 0.0 . 72 . . . none . . PASS Atlas-SNP KDM4B 23030 hgsc.bcm.edu hg19 19 5082513 5082513 + Missense_Mutation SNP C C A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . KDM4B NM_015015 exon9 c.C916A p.Q306K GCCACTCAGGTAA . 38.0 9.0 56.0 0.0 . 120 . . . none . . PASS Atlas-SNP KANK2 25959 hgsc.bcm.edu hg19 19 11304538 11304538 + Missense_Mutation SNP A A T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . KANK2 NM_015493 exon2 c.T218A p.L73Q CGGGGCAGCGAGC . 51.0 19.0 76.0 0.0 . 47 . . . none . . PASS Atlas-SNP ZNF791 163049 hgsc.bcm.edu hg19 19 12739559 12739559 + Missense_Mutation SNP C C A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . ZNF791 NM_153358 exon4 c.C1216A p.H406N AGAAATCACACTG . 207.0 77.0 243.0 0.0 . 53 . . . none . . PASS Atlas-SNP ZNF260 339324 hgsc.bcm.edu hg19 19 37005333 37005333 + Missense_Mutation SNP G G A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . ZNF260 NM_001166038 exon3 c.C808T p.H270Y CAATATGAATTTT . 134.0 42.0 156.0 0.0 . 34 . . . none . . PASS Atlas-SNP FITM2 128486 hgsc.bcm.edu hg19 20 42935425 42935425 + Missense_Mutation SNP G G T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . FITM2 NM_001080472 exon2 c.C629A p.A210D TAAACAGCTGTGC . 55.0 18.0 64.0 0.0 . 15 . . . none . . PASS Atlas-SNP MYH9 4627 hgsc.bcm.edu hg19 22 36716872 36716872 + Missense_Mutation SNP A A T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . MYH9 NM_002473 exon8 c.T839A p.L280H GACAGGAGATAAT . 40.0 11.0 33.0 0.0 . 225 . . . none . . PASS Atlas-SNP USP9X 8239 hgsc.bcm.edu hg19 X 40999924 40999924 + Missense_Mutation SNP C C A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . USP9X NM_001039591 exon7 c.C670A p.L224I GTGGATCTTCTCA . 80.0 55.0 57.0 0.0 . 385 . . . none . . PASS Atlas-SNP CPSF3 51692 hgsc.bcm.edu hg19 2 9570989 9570994 + In_Frame_Del DEL TTCTGA TTCTGA - novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 TTCTGA TTCTGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . CPSF3 NM_016207 exon4 c.320_325del p.107_109del . . 133.0 41.0 124.0 0.0 . 63 . 0.308271 0 none . . PASS Atlas-INDEL SLC34A1 6569 hgsc.bcm.edu hg19 5 176824798 176824800 + In_Frame_Del DEL CTT CTT - novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 CTT CTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . SLC34A1 NM_003052 exon13 c.1430_1432del p.477_478del . . 118.0 26.0 136.0 0.0 . 73 . 0.220339 0 none . . PASS Atlas-INDEL CENPE 1062 hgsc.bcm.edu hg19 4 104041471 104041471 + Frame_Shift_Del DEL T T - novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . CENPE NM_001813 exon44 c.7164delT p.N2388fs . . 62.0 18.0 68.0 0.0 . 253 . 0.290323 0 none . . PASS Atlas-INDEL LRBA 987 hgsc.bcm.edu hg19 4 151827133 151827134 + Frame_Shift_Ins INS - - T novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . LRBA NM_006726 exon13 c.1612_1613insA p.S538fs . . 67.0 27.0 78.0 0.0 . 253 . 0.402985 0 none . . PASS Atlas-INDEL SH3TC1 54436 hgsc.bcm.edu hg19 4 8229750 8229752 + In_Frame_Del DEL ACC ACC - novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 ACC ACC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . SH3TC1 NM_018986 exon12 c.2328_2330del p.776_777del . . 49.0 12.0 43.0 0.0 . 105 . 0.244898 0 none . . PASS Atlas-INDEL PDE4DIP 9659 hgsc.bcm.edu hg19 1 144915498 144915498 + Frame_Shift_Del DEL T T - novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . PDE4DIP NM_001002811 exon10 c.2417delT p.M806fs . . 447.0 85.0 452.0 0.0 . 817 . 0.190157 0 none . . PASS Atlas-INDEL PROSER1 80209 hgsc.bcm.edu hg19 13 39587574 39587574 + Frame_Shift_Del DEL A A - novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . . NM_025138 exon11 c.1816delA p.M606X . . 191.0 72.0 247.0 0.0 . . . 0.376963 0 none . . PASS Atlas-INDEL DARS 1615 hgsc.bcm.edu hg19 2 136673870 136673871 + Frame_Shift_Ins INS - - A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . DARS NM_001349 exon11 c.1032_1033insT p.L344fs . . 153.0 48.0 149.0 0.0 . 44 . 0.313726 0 none . . PASS Atlas-INDEL EFCAB5 374786 hgsc.bcm.edu hg19 17 28405254 28405255 + Frame_Shift_Ins INS - - A novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . EFCAB5 NM_198529 exon15 c.2759_2760insA p.P920fs . . 88.0 19.0 54.0 0.0 . 122 . 0.215909 0 none . . PASS Atlas-INDEL ZNF3 7551 hgsc.bcm.edu hg19 7 99669265 99669266 + Frame_Shift_Ins INS - - C novel TCGA-B9-5156-01A-01D-1589-08 TCGA-B9-5156-10A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8faa0a9e-10a4-41ed-8293-e403028434e8 8355a879-8264-4bba-88a4-f6db446dffa8 . ZNF3 NM_032924 exon6 c.842_843insG p.E281fs . . 113.0 28.0 83.0 0.0 . 54 . 0.247788 0 none . . PASS Atlas-INDEL