Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm ARHGEF10L 55160 hgsc.bcm.edu hg19 1 18023596 18023596 + Silent SNP G G A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . ARHGEF10L NM_018125 exon29 c.G3561A p.L1187L CCCGCTGCTCTCC . 25.0 12.0 25.0 0.0 . 219 . . . none . . PASS Atlas-SNP TMCO4 255104 hgsc.bcm.edu hg19 1 20063898 20063898 + Missense_Mutation SNP A A G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . TMCO4 NM_181719 exon13 c.T1231C p.Y411H AGAAGTAGATGAC . 160.0 91.0 113.0 0.0 . 46 . . . none . . PASS Atlas-SNP TAL1 6886 hgsc.bcm.edu hg19 1 47685450 47685450 + Missense_Mutation SNP G G T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . TAL1 NM_003189 exon4 c.C938A p.T313K CGGGCCGTGTGTT . 74.0 38.0 53.0 0.0 . 31 . . . none . . PASS Atlas-SNP SYDE2 84144 hgsc.bcm.edu hg19 1 85656155 85656155 + Silent SNP T T C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . SYDE2 NM_032184 exon2 c.A1026G p.V342V GTTACATACCACA . 74.0 35.0 63.0 0.0 . 135 . . . none . . PASS Atlas-SNP HS2ST1 9653 hgsc.bcm.edu hg19 1 87569257 87569257 + Missense_Mutation SNP G G A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . HS2ST1 NM_012262 exon6 c.G829A p.E277K GCTACTGAACTCT . 239.0 106.0 239.0 1.0 . 43 . . . none . . PASS Atlas-SNP LRRC8C 84230 hgsc.bcm.edu hg19 1 90179254 90179254 + Silent SNP T T C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . LRRC8C NM_032270 exon3 c.T1125C p.H375H GCTTCATATGATA . 102.0 36.0 93.0 0.0 . 73 . . . none . . PASS Atlas-SNP BTBD8 284697 hgsc.bcm.edu hg19 1 92612759 92612759 + Missense_Mutation SNP C C G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . BTBD8 NM_183242 exon8 c.C953G p.S318C TGACGTCTATACT . 163.0 70.0 146.0 0.0 . 32 . . . none . . PASS Atlas-SNP CCDC19 25790 hgsc.bcm.edu hg19 1 159846354 159846354 + Missense_Mutation SNP C C A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . CCDC19 NM_012337 exon10 c.G1344T p.R448S AAGAATCCTCTCG . 36.0 19.0 36.0 0.0 . 79 . . . none . . PASS Atlas-SNP USF1 7391 hgsc.bcm.edu hg19 1 161011449 161011449 + Missense_Mutation SNP G G A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . USF1 NM_001276373 exon6 c.C464T p.P155L GTGCCAGGAGGGG . 77.0 25.0 67.0 0.0 . 29 . . . none . . PASS Atlas-SNP NIT1 4817 hgsc.bcm.edu hg19 1 161090529 161090529 + Missense_Mutation SNP G G C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . NIT1 NM_005600 exon7 c.G958C p.G320R CTCTATGGCAATC . 81.0 30.0 75.0 0.0 . 41 . . . none . . PASS Atlas-SNP PRRC2C 23215 hgsc.bcm.edu hg19 1 171553267 171553267 + Nonsense_Mutation SNP C C T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . . NM_015172 exon29 c.C7576T p.Q2526X GAACATCAACTGG . 339.0 150.0 266.0 0.0 . . . . . none . . PASS Atlas-SNP AXDND1 126859 hgsc.bcm.edu hg19 1 179503894 179503894 + Missense_Mutation SNP A A T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . AXDND1 NM_144696 exon25 c.A2828T p.E943V AGGCAGAGGAGAA . 128.0 52.0 140.0 0.0 . 142 . . . none . . PASS Atlas-SNP CAPN9 10753 hgsc.bcm.edu hg19 1 230907780 230907780 + Silent SNP A A G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . CAPN9 NM_006615 exon7 c.A810G p.R270R CCAGAGAATCGAG . 133.0 57.0 145.0 0.0 . 116 . . . none . . PASS Atlas-SNP ATAD2B 54454 hgsc.bcm.edu hg19 2 24046400 24046400 + Missense_Mutation SNP G G C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . ATAD2B NM_001242338 exon16 c.C1859G p.A620G AGGGCGGCTTCAG . 67.0 31.0 64.0 0.0 . 110 . . . none . . PASS Atlas-SNP C2orf44 80304 hgsc.bcm.edu hg19 2 24262142 24262142 + Missense_Mutation SNP C C A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . C2orf44 NM_025203 exon2 c.G223T p.V75F GTAGAACAGGTGT . 66.0 30.0 49.0 0.0 . 56 . . . none . . PASS Atlas-SNP ASPRV1 151516 hgsc.bcm.edu hg19 2 70188627 70188627 + Missense_Mutation SNP A A G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . ASPRV1 NM_152792 exon1 c.T194C p.L65P CCACAGAGCAGTG . 58.0 24.0 60.0 0.0 . 41 . . . none . . PASS Atlas-SNP SPOPL 339745 hgsc.bcm.edu hg19 2 139318408 139318408 + Missense_Mutation SNP G G A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . SPOPL NM_001001664 exon8 c.G748A p.V250I CCTGAAGTTTTTA . 118.0 58.0 101.0 0.0 . 54 . . . none . . PASS Atlas-SNP CCDC141 285025 hgsc.bcm.edu hg19 2 179701991 179701991 + Missense_Mutation SNP G G A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . CCDC141 NM_173648 exon23 c.C3955T p.H1319Y CTGGATGTTCAGC . 91.0 37.0 77.0 0.0 . 362 . . . none . . PASS Atlas-SNP DOCK10 55619 hgsc.bcm.edu hg19 2 225670917 225670917 + Missense_Mutation SNP T T C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . DOCK10 NM_014689 exon34 c.A3740G p.Q1247R TGGCTTTGAAATC . 58.0 28.0 52.0 0.0 . 308 . . . none . . PASS Atlas-SNP COL6A3 1293 hgsc.bcm.edu hg19 2 238262001 238262001 + Missense_Mutation SNP C C G rs138588234 alternate_allele TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f COL6A3,arm,malignant_melanoma,0,1 COL6A3 NM_004369 exon25 c.G6673C p.G2225R TGGTCCCCTGCTC . 81.0 0.0 52.0 0.0 . 608 . . . alt . . PASS Atlas-SNP GADL1 339896 hgsc.bcm.edu hg19 3 30819676 30819676 + Missense_Mutation SNP T T C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . GADL1 NM_207359 exon14 c.A1387G p.N463D CCAAATTAAGTTT . 173.0 45.0 107.0 0.0 . 91 . . . none . . PASS Atlas-SNP SETD2 29072 hgsc.bcm.edu hg19 3 47158197 47158197 + Missense_Mutation SNP C C G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f SETD2_ENST00000409792,NS,carcinoma,-1,6 SETD2 NM_014159 exon4 c.G4502C p.C1501S GGTGTACACTCAC . 188.0 106.0 113.0 0.0 . 721 . . . none . . PASS Atlas-SNP USP19 10869 hgsc.bcm.edu hg19 3 49149414 49149414 + Missense_Mutation SNP A A G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . USP19 NM_001199161 exon20 c.T2833C p.F945L CCAGGAAGGGGTA . 97.0 39.0 47.0 0.0 . 158 . . . none . . PASS Atlas-SNP ACOX2 8309 hgsc.bcm.edu hg19 3 58514651 58514651 + Missense_Mutation SNP G G A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . ACOX2 NM_003500 exon9 c.C1025T p.T342I TGTTGTGTCTGGT . 115.0 48.0 66.0 0.0 . 53 . . . none . . PASS Atlas-SNP IQCB1 9657 hgsc.bcm.edu hg19 3 121500645 121500645 + Missense_Mutation SNP T T C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . IQCB1 NM_001023570 exon13 c.A1355G p.D452G CGTGCATCAGTGA . 259.0 153.0 165.0 0.0 . 50 . . . none . . PASS Atlas-SNP MBNL1 4154 hgsc.bcm.edu hg19 3 152165476 152165476 + Missense_Mutation SNP C C A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . MBNL1 NM_207293 exon6 c.C929A p.T310N GTGCCACCGCAGT . 146.0 6.0 160.0 0.0 . 100 . . . none . . PASS Atlas-SNP WDR19 57728 hgsc.bcm.edu hg19 4 39196261 39196261 + Missense_Mutation SNP C C G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . WDR19 NM_025132 exon5 c.C388G p.R130G ACATCTCGAAAGA . 35.0 5.0 34.0 0.0 . 96 . . . none . . PASS Atlas-SNP ARSJ 79642 hgsc.bcm.edu hg19 4 114823444 114823444 + Missense_Mutation SNP C C T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . ARSJ NM_024590 exon2 c.G1786A p.V596I AAGTAACACCTGA . 78.0 33.0 68.0 0.0 . 55 . . . none . . PASS Atlas-SNP SLC45A2 51151 hgsc.bcm.edu hg19 5 33982376 33982376 + Missense_Mutation SNP T T C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . SLC45A2 NM_016180 exon2 c.A527G p.K176R TTCTCCTTGTCCT . 72.0 22.0 67.0 0.0 . 100 . . . none . . PASS Atlas-SNP PPIP5K2 23262 hgsc.bcm.edu hg19 5 102503901 102503901 + Missense_Mutation SNP A A G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . PPIP5K2 NM_015216 exon18 c.A2188G p.I730V GACTGTATAAAAT . 257.0 117.0 229.0 0.0 . 98 . . . none . . PASS Atlas-SNP SRP19 6728 hgsc.bcm.edu hg19 5 112200371 112200371 + Missense_Mutation SNP A A G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . SRP19 NM_001204196 exon3 c.A167G p.E56G AGGCAGAGTCCGG . 105.0 46.0 99.0 0.0 . 12 . . . none . . PASS Atlas-SNP FOXF2 2295 hgsc.bcm.edu hg19 6 1390675 1390675 + Missense_Mutation SNP C C G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . FOXF2 NM_001452 exon1 c.C493G p.L165V AAGGGCCTCGGGC . 162.0 66.0 155.0 0.0 . 28 . . . none . . PASS Atlas-SNP GMPR 2766 hgsc.bcm.edu hg19 6 16254914 16254914 + Missense_Mutation SNP T T A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . GMPR NM_006877 exon4 c.T413A p.F138Y AACATTTTGTGGA . 199.0 94.0 169.0 0.0 . 44 . . . none . . PASS Atlas-SNP RBM24 221662 hgsc.bcm.edu hg19 6 17292212 17292212 + Silent SNP G G A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . RBM24 NM_001143942 exon4 c.G573A p.G191G TGCTGGGGGCTAT . 30.0 10.0 31.0 0.0 . 40 . . . none . . PASS Atlas-SNP DDX43 55510 hgsc.bcm.edu hg19 6 74119027 74119027 + Silent SNP G G A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . DDX43 NM_018665 exon10 c.G1236A p.K412K AATGAAGATTTTG . 204.0 102.0 203.0 0.0 . 69 . . . none . . PASS Atlas-SNP AMD1 262 hgsc.bcm.edu hg19 6 111213404 111213404 + Silent SNP T T C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . AMD1 NM_001634 exon5 c.T468C p.C156C TGACTGTTGGTAT . 337.0 170.0 308.0 0.0 . 23 . . . none . . PASS Atlas-SNP SLC2A12 154091 hgsc.bcm.edu hg19 6 134350343 134350343 + Missense_Mutation SNP C C A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . SLC2A12 NM_145176 exon2 c.G620T p.G207V AAAACTCCCAAGG . 155.0 9.0 119.0 0.0 . 43 . . . none . . PASS Atlas-SNP DYNC1I1 1780 hgsc.bcm.edu hg19 7 95668696 95668696 + Missense_Mutation SNP C C T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . DYNC1I1 NM_004411 exon14 c.C1523T p.S508L TCACATCATCATT . 184.0 123.0 118.0 0.0 . 111 . . . none . . PASS Atlas-SNP DLX5 1749 hgsc.bcm.edu hg19 7 96651541 96651541 + Missense_Mutation SNP C C G rs376488297 alternate_allele TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . DLX5 NM_005221 exon2 c.G496C p.E166Q CGCGTTCCGGCAA . 296.0 59.0 231.0 0.0 . 52 . . . alt . . PASS Atlas-SNP STAG3 10734 hgsc.bcm.edu hg19 7 99800113 99800113 + Missense_Mutation SNP T T C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . STAG3 NM_012447 exon25 c.T2600C p.L867P AGCGGCTACACCA . 382.0 242.0 254.0 0.0 . 121 . . . none . . PASS Atlas-SNP PSMC2 5701 hgsc.bcm.edu hg19 7 103002482 103002482 + Silent SNP G G T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . PSMC2 NM_001204453 exon5 c.G369T p.V123V TGTGGTGGACCTT . 170.0 60.0 102.0 0.0 . 38 . . . none . . PASS Atlas-SNP WEE2 494551 hgsc.bcm.edu hg19 7 141408685 141408685 + Nonsense_Mutation SNP A A T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . WEE2 NM_001105558 exon1 c.A127T p.K43X CCAGAGAAGGGTG . 341.0 193.0 265.0 0.0 . 59 . . . none . . PASS Atlas-SNP KAT6A 7994 hgsc.bcm.edu hg19 8 41794928 41794928 + Missense_Mutation SNP C C A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . . NM_001099412 exon17 c.G3198T p.E1066D ATCGATCTCAAAC . 157.0 64.0 175.0 0.0 . . . . . none . . PASS Atlas-SNP SLURP1 57152 hgsc.bcm.edu hg19 8 143822661 143822661 + Missense_Mutation SNP C C A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f SLURP1,NS,carcinoma,0,1 SLURP1 NM_020427 exon3 c.G212T p.R71L CAGGAGCGGGTCA . 36.0 2.0 23.0 0.0 . 16 . . . none . . PASS Atlas-SNP PRSS3 5646 hgsc.bcm.edu hg19 9 33797829 33797829 + Missense_Mutation SNP G G A rs138654302 TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f PRSS3_ENST00000361005,NS,carcinoma,0,2 PRSS3 NM_007343 exon3 c.G374A p.R125H TCAGCCGCATCCA . 131.0 41.0 94.0 1.0 . 79 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP CCIN 881 hgsc.bcm.edu hg19 9 36169599 36169599 + Missense_Mutation SNP G G A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . CCIN NM_005893 exon1 c.G100A p.V34M CTGAGTGTGGACA . 101.0 10.0 67.0 0.0 . 56 . . . none . . PASS Atlas-SNP PTCH1 5727 hgsc.bcm.edu hg19 9 98229471 98229471 + Silent SNP C C A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . PTCH1 NM_000264 exon15 c.G2487T p.V829V ATACTTCACGTTA . 152.0 64.0 118.0 0.0 . 1850 . . . none . . PASS Atlas-SNP TMEM246 84302 hgsc.bcm.edu hg19 9 104238602 104238602 + Missense_Mutation SNP T T C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . . NM_032342 exon2 c.A773G p.E258G ATGGGCTCTGGAT . 159.0 72.0 152.0 0.0 . . . . . none . . PASS Atlas-SNP C5 727 hgsc.bcm.edu hg19 9 123742457 123742457 + Silent SNP A A G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . C5 NM_001735 exon28 c.T3562C p.L1188L TGGCCAATGTAAA . 103.0 42.0 93.0 0.0 . 124 . . . none . . PASS Atlas-SNP BRD3 8019 hgsc.bcm.edu hg19 9 136915699 136915699 + Missense_Mutation SNP C C G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . BRD3 NM_007371 exon5 c.G511C p.V171L CCGCCACTTGCTG . 69.0 34.0 76.0 0.0 . 82 . . . none . . PASS Atlas-SNP KLF6 1316 hgsc.bcm.edu hg19 10 3823844 3823844 + Missense_Mutation SNP C C A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . KLF6 NM_001160125 exon2 c.G665T p.R222L TGCGTCCGCTGGT . 35.0 20.0 38.0 0.0 . 38 . . . none . . PASS Atlas-SNP SKIDA1 387640 hgsc.bcm.edu hg19 10 21804183 21804183 + Missense_Mutation SNP T T C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . . NM_207371 exon4 c.A2569G p.I857V CAATAATGAGTGA . 54.0 27.0 47.0 0.0 . . . . . none . . PASS Atlas-SNP SKIDA1 387640 hgsc.bcm.edu hg19 10 21805486 21805486 + Silent SNP C C T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f C10orf140_ENST00000449193,rectum,carcinoma,0,4 . NM_207371 exon4 c.G1266A p.E422E TTCCTCCTCCTCC . 9.0 6.0 2.0 2.0 . . . . . none . . PASS Atlas-SNP KIAA1217 56243 hgsc.bcm.edu hg19 10 24762791 24762791 + Missense_Mutation SNP G G C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . KIAA1217 NM_019590 exon6 c.G1481C p.G494A CCCACGGCCCCCC . 132.0 55.0 143.0 0.0 . 235 . . . none . . PASS Atlas-SNP HERC4 26091 hgsc.bcm.edu hg19 10 69714847 69714847 + Missense_Mutation SNP A A G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . HERC4 NM_022079 exon19 c.T2090C p.L697P AGAAAAAGAGAGG . 98.0 28.0 91.0 0.0 . 78 . . . none . . PASS Atlas-SNP CCAR1 55749 hgsc.bcm.edu hg19 10 70513756 70513756 + Missense_Mutation SNP G G A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . CCAR1 NM_018237 exon11 c.G1266A p.M422I TGTAATGCACAGA . 183.0 82.0 171.0 0.0 . 118 . . . none . . PASS Atlas-SNP POLR3A 11128 hgsc.bcm.edu hg19 10 79745045 79745045 + Missense_Mutation SNP C C T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . POLR3A NM_007055 exon24 c.G3125A p.G1042D GGCTCACCAATGC . 200.0 75.0 196.0 0.0 . 104 . . . none . . PASS Atlas-SNP GRK5 2869 hgsc.bcm.edu hg19 10 120967430 120967430 + Missense_Mutation SNP A A T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . GRK5 NM_005308 exon1 c.A1T p.M1L CTGTCAATGGAGC . 29.0 16.0 21.0 0.0 . 58 . . . none . . PASS Atlas-SNP SLC5A12 159963 hgsc.bcm.edu hg19 11 26720065 26720065 + Missense_Mutation SNP A A G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . SLC5A12 NM_178498 exon7 c.T839C p.L280S CCCAGCAAGTTAA . 57.0 35.0 43.0 0.0 . 134 . . . none . . PASS Atlas-SNP CAPRIN1 4076 hgsc.bcm.edu hg19 11 34118752 34118752 + Missense_Mutation SNP A A G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . CAPRIN1 NM_203364 exon17 c.A1910G p.D637G GATATGATGGTTA . 97.0 45.0 105.0 0.0 . 110 . . . none . . PASS Atlas-SNP C11orf82 220042 hgsc.bcm.edu hg19 11 82642927 82642927 + Missense_Mutation SNP C C A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f C11orf82,NS,carcinoma,0,1 C11orf82 NM_145018 exon6 c.C547A p.Q183K TTCCATCAACTTT . 257.0 95.0 284.0 1.0 . 71 . . . none . . PASS Atlas-SNP MRE11A 4361 hgsc.bcm.edu hg19 11 94224022 94224022 + Missense_Mutation SNP A A C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . MRE11A NM_005591 exon3 c.T130G p.L44V GTCTTAAAATTTC . 174.0 65.0 154.0 0.0 . 145 . . . none . . PASS Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103124155 103124155 + Missense_Mutation SNP C C T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . DYNC2H1 NM_001080463 exon67 c.C10205T p.T3402I CTACAACAAGAAG . 116.0 35.0 95.0 0.0 . 246 . . . none . . PASS Atlas-SNP IL10RA 3587 hgsc.bcm.edu hg19 11 117869597 117869597 + Silent SNP A A T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . IL10RA NM_001558 exon7 c.A978T p.P326P CAAGCCATCCCTG . 86.0 31.0 96.0 0.0 . 46 . . . none . . PASS Atlas-SNP HSPA8 3312 hgsc.bcm.edu hg19 11 122930940 122930940 + Missense_Mutation SNP A A G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . HSPA8 NM_006597 exon4 c.T448C p.F150L CATTAAAGTAAGC . 109.0 47.0 109.0 0.0 . 168 . . . none . . PASS Atlas-SNP ERC1 23085 hgsc.bcm.edu hg19 12 1219488 1219488 + Missense_Mutation SNP G G A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . ERC1 NM_178039 exon5 c.G1292A p.S431N ATCGGAGCCATTC . 110.0 50.0 71.0 0.0 . 95 . . . none . . PASS Atlas-SNP CASC1 55259 hgsc.bcm.edu hg19 12 25308273 25308273 + Missense_Mutation SNP A A G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . CASC1 NM_001082972 exon5 c.T446C p.L149S TGTTTCAATTTCT . 78.0 31.0 71.0 0.0 . 146 . . . none . . PASS Atlas-SNP DIP2B 57609 hgsc.bcm.edu hg19 12 51138542 51138542 + Nonsense_Mutation SNP G G T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . DIP2B NM_173602 exon38 c.G4651T p.G1551X TCCAGAGGAGAGA . 89.0 50.0 58.0 0.0 . 167 . . . none . . PASS Atlas-SNP LRCH1 23143 hgsc.bcm.edu hg19 13 47269134 47269134 + Silent SNP G G A rs201892262 bycluster TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . LRCH1 NM_015116 exon9 c.G1227A p.S409S CCATTCGGAATTT . 177.0 86.0 211.0 0.0 . 104 . . . weak G|0.999;A|0.001 0.001 PASS Atlas-SNP COCH 1690 hgsc.bcm.edu hg19 14 31348144 31348144 + Missense_Mutation SNP G G T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . COCH NM_004086 exon5 c.G367T p.V123L TTCACAGTAACTA . 171.0 77.0 171.0 0.0 . 54 . . . none . . PASS Atlas-SNP C14orf105 55195 hgsc.bcm.edu hg19 14 57938247 57938247 + Missense_Mutation SNP T T G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . C14orf105 NM_018168 exon6 c.A717C p.K239N GCCAATTTTCCAG . 54.0 27.0 60.0 0.0 . 26 . . . none . . PASS Atlas-SNP DPF3 8110 hgsc.bcm.edu hg19 14 73137911 73137911 + Missense_Mutation SNP G G C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . DPF3 NM_012074 exon9 c.C1007G p.P336R GAGCGAGGCTCTT . 64.0 19.0 43.0 0.0 . 117 . . . none . . PASS Atlas-SNP SERPINA3 12 hgsc.bcm.edu hg19 14 95081284 95081284 + Missense_Mutation SNP A A G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . SERPINA3 NM_001085 exon2 c.A506G p.D169G CCACTGACTTTCA . 79.0 39.0 61.0 0.0 . 78 . . . none . . PASS Atlas-SNP JAG2 3714 hgsc.bcm.edu hg19 14 105621904 105621904 + Silent SNP C C T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . JAG2 NM_145159 exon5 c.G783A p.E261E CCTGCACTCCCCA . 155.0 78.0 123.0 0.0 . 69 . . . none . . PASS Atlas-SNP RAB8B 51762 hgsc.bcm.edu hg19 15 63548782 63548782 + Nonsense_Mutation SNP A A T rs202115341 by1000genomes;alternate_allele TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . RAB8B NM_016530 exon5 c.A403T p.R135X AAAGAAAGAGGGG . 84.0 42.0 86.0 0.0 . 23 . . . alt A|1.000;G|0.000 . PASS Atlas-SNP HERC1 8925 hgsc.bcm.edu hg19 15 63953965 63953965 + Missense_Mutation SNP T T G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . HERC1 NM_003922 exon45 c.A9157C p.T3053P AACTTGTTGACTT . 134.0 53.0 120.0 0.0 . 624 . . . none . . PASS Atlas-SNP BNC1 646 hgsc.bcm.edu hg19 15 83935687 83935687 + Silent SNP C C A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . BNC1 NM_001717 exon3 c.G336T p.L112L CCGGTCCAGTAGG . 155.0 78.0 115.0 0.0 . 149 . . . none . . PASS Atlas-SNP SMCR8 140775 hgsc.bcm.edu hg19 17 18220177 18220177 + Silent SNP T T C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . SMCR8 NM_144775 exon1 c.T1074C p.D358D GATTGATAGAGCA . 158.0 50.0 90.0 0.0 . 62 . . . none . . PASS Atlas-SNP KIAA0100 9703 hgsc.bcm.edu hg19 17 26943748 26943748 + Missense_Mutation SNP G G C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . KIAA0100 NM_014680 exon35 c.C6045G p.I2015M CAGCTGGATGGTG . 157.0 98.0 89.0 0.0 . 175 . . . none . . PASS Atlas-SNP SSH2 85464 hgsc.bcm.edu hg19 17 27959406 27959406 + Missense_Mutation SNP C C G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . SSH2 NM_033389 exon15 c.G2725C p.A909P TTGGTGCTAGGTC . 614.0 355.0 401.0 0.0 . 107 . . . none . . PASS Atlas-SNP ZNF830 91603 hgsc.bcm.edu hg19 17 33289325 33289325 + Missense_Mutation SNP C C G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . ZNF830 NM_052857 exon1 c.C740G p.P247R CGTTACCGGAAGG . 90.0 55.0 62.0 0.0 . 26 . . . none . . PASS Atlas-SNP LIG3 3980 hgsc.bcm.edu hg19 17 33310454 33310454 + Missense_Mutation SNP T T C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . LIG3 NM_013975 exon2 c.T430C p.F144L TGCATGTTTGAGA . 66.0 42.0 22.0 0.0 . 164 . . . none . . PASS Atlas-SNP SLC35G3 146861 hgsc.bcm.edu hg19 17 33520712 33520712 + Silent SNP C C T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . . NM_152462 exon1 c.G615A p.L205L AAGCCTCAGGGAC . 240.0 168.0 173.0 0.0 . . . . . none . . PASS Atlas-SNP STK11 6794 hgsc.bcm.edu hg19 19 1220439 1220439 + Nonsense_Mutation SNP A A T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . STK11 NM_000455 exon4 c.A532T p.K178X GACATCAAGCCGG . 18.0 9.0 21.0 0.0 . 410 . . . none . . PASS Atlas-SNP EPS15L1 58513 hgsc.bcm.edu hg19 19 16513268 16513268 + Missense_Mutation SNP T T C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . EPS15L1 NM_021235 exon16 c.A1655G p.E552G CGGCTTTCATGCA . 115.0 51.0 68.0 0.0 . 81 . . . none . . PASS Atlas-SNP ZNF676 163223 hgsc.bcm.edu hg19 19 22363129 22363129 + Missense_Mutation SNP A A C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . ZNF676 NM_001001411 exon3 c.T1390G p.F464V TAGTAAAGCTTGA . 248.0 103.0 255.0 0.0 . 146 . . . none . . PASS Atlas-SNP ZNF416 55659 hgsc.bcm.edu hg19 19 58083736 58083736 + Missense_Mutation SNP G G C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . ZNF416 NM_017879 exon4 c.C1536G p.H512Q TTTCTGGTGTTCA . 140.0 65.0 137.0 0.0 . 50 . . . none . . PASS Atlas-SNP ZNF416 55659 hgsc.bcm.edu hg19 19 58083765 58083765 + Missense_Mutation SNP A A G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . ZNF416 NM_017879 exon4 c.T1507C p.F503L GTCTAAAAAATTT . 138.0 64.0 124.0 0.0 . 50 . . . none . . PASS Atlas-SNP REM1 28954 hgsc.bcm.edu hg19 20 30064536 30064536 + Silent SNP G G A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . REM1 NM_014012 exon2 c.G288A p.L96L CAGCTTGGCCAGC . 47.0 27.0 43.0 0.0 . 54 . . . none . . PASS Atlas-SNP PIGU 128869 hgsc.bcm.edu hg19 20 33163023 33163023 + Missense_Mutation SNP C C T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . PIGU NM_080476 exon11 c.G1079A p.C360Y ATGATGCAGGTGA . 47.0 19.0 59.0 0.0 . 35 . . . none . . PASS Atlas-SNP CSTF1 1477 hgsc.bcm.edu hg19 20 54974310 54974310 + Silent SNP T T A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . CSTF1 NM_001033522 exon5 c.T933A p.S311S TTGTTCTGCCATT . 134.0 61.0 137.0 0.0 . 29 . . . none . . PASS Atlas-SNP KCNJ15 3772 hgsc.bcm.edu hg19 21 39671714 39671714 + Missense_Mutation SNP C C T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . KCNJ15 NM_002243 exon4 c.A531T p.E177D TGAGACCATCAAG . 70.0 26.0 74.0 0.0 . 43 . . . none . . PASS Atlas-SNP CCDC157 550631 hgsc.bcm.edu hg19 22 30771620 30771620 + Missense_Mutation SNP A A G novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . CCDC157 NM_001017437 exon10 c.A1825G p.I609V TCCAAAATCCGGG . 50.0 4.0 40.0 0.0 . 86 . . . none . . PASS Atlas-SNP ND2 0 hgsc.bcm.edu hg19 MT 4838 4838 + Silent SNP T T C novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . . ENST00000361453 exon1 c.T369C p.P123P CACCCCTCTGACA . 11.0 11.0 2.0 0.0 . . . . . none . . PASS Atlas-SNP PGBD2 267002 hgsc.bcm.edu hg19 1 249211266 249211267 + Frame_Shift_Ins INS - - A novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . PGBD2 NM_170725 exon3 c.483_484insA p.T161fs . . 241.0 105.0 213.0 0.0 . 103 . 0.435685 0 none . . PASS Atlas-INDEL TDRD5 163589 hgsc.bcm.edu hg19 1 179609125 179609129 + Frame_Shift_Del DEL GTGTT GTGTT - novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 GTGTT GTGTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . TDRD5 NM_001199085 exon10 c.1671_1675del p.557_559del . . 268.0 75.0 306.0 0.0 . 149 . 0.279851 0 none . . PASS Atlas-INDEL PKP4 8502 hgsc.bcm.edu hg19 2 159537000 159537001 + Frame_Shift_Ins INS - - T novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . PKP4 NM_003628 exon22 c.3390_3391insT p.R1130fs . . 173.0 88.0 138.0 0.0 . 133 . 0.508671 0 none . . PASS Atlas-INDEL FOLH1 2346 hgsc.bcm.edu hg19 11 49175458 49175458 + Frame_Shift_Del DEL T T - novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . FOLH1 NM_004476 exon17 c.1911delG p.K637fs . . 108.0 44.0 95.0 0.0 . 141 . 0.407407 0 none . . PASS Atlas-INDEL PARP4 143 hgsc.bcm.edu hg19 13 25009395 25009395 + Frame_Shift_Del DEL G G - novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . PARP4 NM_006437 exon31 c.3885delA p.P1295fs . . 129.0 54.0 137.0 0.0 . 142 . 0.418605 0 none . . PASS Atlas-INDEL MFGE8 4240 hgsc.bcm.edu hg19 15 89449052 89449053 + Frame_Shift_Ins INS - - AA novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . MFGE8 NM_001114614 exon5 c.621_622insTT p.L207fs . . 186.0 70.0 137.0 0.0 . 60 . 0.376344 0 none . . PASS Atlas-INDEL PAIP1 10605 hgsc.bcm.edu hg19 5 43555937 43555937 + Frame_Shift_Del DEL A A - novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . PAIP1 NM_006451 exon2 c.431delA p.Y144fs . . 305.0 121.0 234.0 0.0 . 46 . 0.396721 0 none . . PASS Atlas-INDEL LINS 55180 hgsc.bcm.edu hg19 15 101114203 101114205 + In_Frame_Del DEL TGA TGA - novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 TGA TGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . LINS NM_001040616 exon5 c.874_876del p.292_292del . . 67.0 27.0 59.0 0.0 . 62 . 0.402985 0 none . . PASS Atlas-INDEL TSHZ2 128553 hgsc.bcm.edu hg19 20 51871026 51871026 + Frame_Shift_Del DEL T T - novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . TSHZ2 NM_173485 exon2 c.1028delC p.S343fs . . 222.0 105.0 154.0 0.0 . 209 . 0.472973 0 none . . PASS Atlas-INDEL HAS2 3037 hgsc.bcm.edu hg19 8 122627047 122627047 + Frame_Shift_Del DEL C C - novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . HAS2 NM_005328 exon4 c.962delT p.V321fs . . 241.0 116.0 196.0 0.0 . 87 . 0.481328 0 none . . PASS Atlas-INDEL RAB28 9364 hgsc.bcm.edu hg19 4 13481115 13481115 + Frame_Shift_Del DEL A A - novel TCGA-B9-5155-01A-01D-1589-08 TCGA-B9-5155-10A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9ca1b195-86fe-4597-933d-93903a61f676 d8826711-1c53-40c3-b444-2c9614f49b6f . RAB28 NM_004249 exon2 c.112delG p.G38fs . . 97.0 40.0 69.0 0.0 . 56 . 0.412371 0 none . . PASS Atlas-INDEL