Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm ATP1A1 476 hgsc.bcm.edu hg19 1 116941400 116941400 + Missense_Mutation SNP G G C rs11540954 TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . ATP1A1 NM_000701 exon16 c.G2282C p.G761A TGACTGGAGTAGA . 178.0 56.0 180.0 0.0 . 87 . . . weak . . PASS Atlas-SNP ATP1B1 481 hgsc.bcm.edu hg19 1 169096584 169096584 + Missense_Mutation SNP T T C novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . ATP1B1 NM_001677 exon4 c.T505C p.Y169H TATGGCTACAAAG . 188.0 58.0 167.0 0.0 . 29 . . . none . . PASS Atlas-SNP GOLT1A 127845 hgsc.bcm.edu hg19 1 204183026 204183026 + Silent SNP G G T novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . GOLT1A NM_198447 exon1 c.C9A p.S3S GGTGATGGAGATC . 50.0 11.0 42.0 0.0 . 15 . . . none . . PASS Atlas-SNP GRHL1 29841 hgsc.bcm.edu hg19 2 10101557 10101557 + Missense_Mutation SNP G G A rs140278187 bycluster TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . GRHL1 NM_198182 exon4 c.G661A p.V221I GAAGGCGTTCAGG . 170.0 54.0 154.0 0.0 . 95 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP TMEM37 140738 hgsc.bcm.edu hg19 2 120194829 120194829 + Missense_Mutation SNP T T C novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . TMEM37 NM_183240 exon2 c.T386C p.I129T GTTCCATCCTCCT . 471.0 126.0 464.0 0.0 . 40 . . . none . . PASS Atlas-SNP KCNH7 90134 hgsc.bcm.edu hg19 2 163241347 163241347 + Missense_Mutation SNP A A G novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . KCNH7 NM_033272 exon13 c.T2813C p.I938T GAGGAGATGAAAG . 437.0 141.0 459.0 1.0 . 378 . . . none . . PASS Atlas-SNP ITGB5 3693 hgsc.bcm.edu hg19 3 124515613 124515613 + Nonsense_Mutation SNP C C A novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . ITGB5 NM_002213 exon10 c.G1315T p.E439X CATGCTCCGTGTG . 89.0 22.0 73.0 0.0 . 66 . . . none . . PASS Atlas-SNP ITGB5 3693 hgsc.bcm.edu hg19 3 124515614 124515614 + Silent SNP C C T novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . ITGB5 NM_002213 exon10 c.G1314A p.T438T ATGCTCCGTGTGT . 91.0 24.0 73.0 0.0 . 66 . . . none . . PASS Atlas-SNP PCYT1A 5130 hgsc.bcm.edu hg19 3 195974373 195974373 + Silent SNP G G A novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . PCYT1A NM_005017 exon6 c.C351T p.L117L GTGTGTGAGCTCA . 245.0 63.0 170.0 0.0 . 34 . . . none . . PASS Atlas-SNP LRRC33 375387 hgsc.bcm.edu hg19 3 196387840 196387840 + Silent SNP C C T novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . LRRC33 NM_198565 exon3 c.C1326T p.P442P TTGTCCCCTGCCA . 489.0 202.0 439.0 1.0 . 91 . . . none . . PASS Atlas-SNP CLOCK 9575 hgsc.bcm.edu hg19 4 56301654 56301654 + Silent SNP A A T novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . CLOCK NM_004898 exon23 c.T2469A p.S823S TTGCTGAGACTGA . 195.0 62.0 205.0 0.0 . 81 . . . none . . PASS Atlas-SNP UGT2B7 7364 hgsc.bcm.edu hg19 4 69978199 69978199 + Silent SNP A A G novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . UGT2B7 NM_001074 exon6 c.A1335G p.L445L GAAATTATCAAGA . 252.0 66.0 203.0 0.0 . 79 . . . none . . PASS Atlas-SNP ARHGAP24 83478 hgsc.bcm.edu hg19 4 86921691 86921691 + Missense_Mutation SNP A A G novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . ARHGAP24 NM_001025616 exon10 c.A2063G p.D688G AACTGGATCAGGA . 129.0 53.0 151.0 0.0 . 116 . . . none . . PASS Atlas-SNP SEMA5A 9037 hgsc.bcm.edu hg19 5 9226981 9226981 + Silent SNP C C T rs141767878 bycluster TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . SEMA5A NM_003966 exon7 c.G432A p.S144S CCATACCGAGCGG . 117.0 6.0 161.0 0.0 . 236 . . . weak C|1.000;T|0.000 0.000 PASS Atlas-SNP ADAMTS19 171019 hgsc.bcm.edu hg19 5 128956361 128956361 + Missense_Mutation SNP A A G novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 ADAMTS19,caecum,carcinoma,0,1 ADAMTS19 NM_133638 exon9 c.A1511G p.H504R GTCTTCATATCAT . 282.0 12.0 229.0 0.0 . 216 . . . none . . PASS Atlas-SNP GABRG2 2566 hgsc.bcm.edu hg19 5 161576298 161576298 + Missense_Mutation SNP A A T novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . GABRG2 NM_198903 exon9 c.A1227T p.K409N GGACAAAGATAAA . 178.0 57.0 158.0 0.0 . 142 . . . none . . PASS Atlas-SNP FAM135A 57579 hgsc.bcm.edu hg19 6 71234676 71234676 + Missense_Mutation SNP T T A novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . FAM135A NM_001162529 exon13 c.T1889A p.M630K CACAAATGGAACA . 127.0 52.0 143.0 0.0 . 181 . . . none . . PASS Atlas-SNP CTTNBP2 83992 hgsc.bcm.edu hg19 7 117364734 117364734 + Silent SNP T T A novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . CTTNBP2 NM_033427 exon19 c.A4314T p.I1438I GGAAACTATGGAT . 187.0 53.0 147.0 0.0 . 200 . . . none . . PASS Atlas-SNP ARF5 381 hgsc.bcm.edu hg19 7 127229193 127229193 + Missense_Mutation SNP A A G novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . ARF5 NM_001662 exon2 c.A124G p.I42V GGGGAGATTGTCA . 117.0 46.0 99.0 0.0 . 20 . . . none . . PASS Atlas-SNP ABRA 137735 hgsc.bcm.edu hg19 8 107782408 107782408 + Missense_Mutation SNP C C A novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . ABRA NM_139166 exon1 c.G11T p.G4V TTTTCGCCCGGAG . 125.0 27.0 110.0 0.0 . 57 . . . none . . PASS Atlas-SNP MRPL13 28998 hgsc.bcm.edu hg19 8 121455496 121455496 + Missense_Mutation SNP G G A novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . MRPL13 NM_014078 exon2 c.C80T p.P27L CCAGGTGGCTGCA . 194.0 62.0 178.0 0.0 . 18 . . . none . . PASS Atlas-SNP CYHR1 50626 hgsc.bcm.edu hg19 8 145690192 145690192 + Missense_Mutation SNP C C G novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . CYHR1 NM_032687 exon2 c.G93C p.E31D ACTCACCTCGGCT . 51.0 18.0 38.0 0.0 . 39 . . . none . . PASS Atlas-SNP TNFSF8 944 hgsc.bcm.edu hg19 9 117666220 117666220 + Missense_Mutation SNP A A C novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . TNFSF8 NM_001244 exon4 c.T696G p.N232K GTCTGAATTACTG . 273.0 82.0 266.0 0.0 . 34 . . . none . . PASS Atlas-SNP TNKS2 80351 hgsc.bcm.edu hg19 10 93593686 93593686 + Missense_Mutation SNP T T C novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . TNKS2 NM_025235 exon12 c.T1352C p.L451P GCCGCCTACTCCT . 240.0 79.0 225.0 0.0 . 103 . . . none . . PASS Atlas-SNP ITPRIP 85450 hgsc.bcm.edu hg19 10 106075425 106075425 + Missense_Mutation SNP C C T novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . ITPRIP NM_001272013 exon2 c.G385A p.A129T AGGGGGCGCCCCC . 179.0 76.0 167.0 0.0 . 44 . . . none . . PASS Atlas-SNP MRGPRX1 259249 hgsc.bcm.edu hg19 11 18955994 18955994 + Missense_Mutation SNP A A T novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . MRGPRX1 NM_147199 exon1 c.T338A p.L113Q GCACTCAGAAAGC . 153.0 7.0 157.0 0.0 . 84 . . . none . . PASS Atlas-SNP ABCG4 64137 hgsc.bcm.edu hg19 11 119027678 119027678 + Missense_Mutation SNP G G T novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . ABCG4 NM_022169 exon9 c.G1022T p.S341I AGAGCAGCCCTGA . 220.0 75.0 253.0 0.0 . 77 . . . none . . PASS Atlas-SNP WDR66 144406 hgsc.bcm.edu hg19 12 122413567 122413567 + Silent SNP T T C novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . WDR66 NM_144668 exon19 c.T2982C p.I994I AGCAATTGGCTTT . 141.0 49.0 184.0 0.0 . 143 . . . none . . PASS Atlas-SNP FRMD6 122786 hgsc.bcm.edu hg19 14 52182105 52182105 + Silent SNP G G T novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . FRMD6 NM_001267046 exon10 c.G912T p.T304T CTACACGGGGTGC . 156.0 13.0 153.0 0.0 . 100 . . . none . . PASS Atlas-SNP TMC3 342125 hgsc.bcm.edu hg19 15 81648105 81648105 + Missense_Mutation SNP G G A novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . TMC3 NM_001080532 exon9 c.C896T p.A299V AATATAGCTTCCT . 112.0 35.0 89.0 0.0 . 112 . . . none . . PASS Atlas-SNP ADAMTS17 170691 hgsc.bcm.edu hg19 15 100657190 100657190 + Missense_Mutation SNP C C T novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . ADAMTS17 NM_139057 exon13 c.G1750A p.G584S TGGCACCCGGGCA . 50.0 20.0 65.0 0.0 . 127 . . . none . . PASS Atlas-SNP IFT140 9742 hgsc.bcm.edu hg19 16 1608090 1608090 + Missense_Mutation SNP G G T novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . IFT140 NM_014714 exon19 c.C2245A p.H749N GGATGTGGTGGCA . 568.0 163.0 421.0 1.0 . 128 . . . none . . PASS Atlas-SNP ASGR1 432 hgsc.bcm.edu hg19 17 7081872 7081872 + Missense_Mutation SNP T T G novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . ASGR1 NM_001671 exon2 c.A11C p.E4A TGATACTCCTTGG . 124.0 60.0 92.0 0.0 . 20 . . . none . . PASS Atlas-SNP PFAS 5198 hgsc.bcm.edu hg19 17 8170542 8170542 + Missense_Mutation SNP C C T novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . PFAS NM_012393 exon24 c.C3164T p.P1055L CCGTGCCCCGTGA . 44.0 13.0 21.0 0.0 . 91 . . . none . . PASS Atlas-SNP ACE 1636 hgsc.bcm.edu hg19 17 61562641 61562641 + Missense_Mutation SNP T T C novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . ACE NM_000789 exon13 c.T1966C p.Y656H GAGGAATATGACC . 111.0 52.0 91.0 0.0 . 187 . . . none . . PASS Atlas-SNP DAZAP1 26528 hgsc.bcm.edu hg19 19 1428875 1428875 + Missense_Mutation SNP A A G novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . DAZAP1 NM_018959 exon8 c.A581G p.K194R ACAGCAAGAGCCA . 87.0 26.0 80.0 0.0 . 52 . . . none . . PASS Atlas-SNP EEF2 1938 hgsc.bcm.edu hg19 19 3979985 3979985 + Missense_Mutation SNP C C T novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . EEF2 NM_001961 exon10 c.G1426A p.D476N ACTGGTCCACGCC . 76.0 23.0 85.0 0.0 . 57 . . . none . . PASS Atlas-SNP EIF3G 8666 hgsc.bcm.edu hg19 19 10230530 10230530 + Silent SNP A A G novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . EIF3G NM_003755 exon1 c.T6C p.P2P TCCAGTAGGCATC . 114.0 27.0 120.0 0.0 . 16 . . . none . . PASS Atlas-SNP ZNF627 199692 hgsc.bcm.edu hg19 19 11728624 11728624 + Missense_Mutation SNP G G T novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . ZNF627 NM_145295 exon4 c.G1306T p.V436L TTTCGAGTACATG . 149.0 38.0 186.0 0.0 . 43 . . . none . . PASS Atlas-SNP SLC5A3 6526 hgsc.bcm.edu hg19 21 35467607 35467607 + Missense_Mutation SNP G G A novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . SLC5A3 NM_006933 exon2 c.G110A p.S37N CCGTGAGTGGATA . 308.0 107.0 265.0 0.0 . 52 . . . none . . PASS Atlas-SNP SUSD2 56241 hgsc.bcm.edu hg19 22 24581140 24581140 + Silent SNP C C A novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . SUSD2 NM_019601 exon6 c.C861A p.A287A TGTGGCCTGGGCA . 69.0 21.0 79.0 0.0 . 68 . . . none . . PASS Atlas-SNP TTLL1 25809 hgsc.bcm.edu hg19 22 43442517 43442517 + Silent SNP C C G novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . TTLL1 NM_012263 exon10 c.G1041C p.L347L ATTAATCAGGTTG . 301.0 13.0 317.0 0.0 . 41 . . . none . . PASS Atlas-SNP COX2 5743 hgsc.bcm.edu hg19 MT 8060 8060 + Missense_Mutation SNP G G A rs79386853 bycluster;alternate_allele TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . . ENST00000361739 exon1 c.G475A p.V159I CAAGACGTCTTGC . 75.0 7.0 60.0 0.0 . . . . . alt T|1.000;|0.000 . PASS Atlas-SNP SELE 6401 hgsc.bcm.edu hg19 1 169698749 169698749 + Frame_Shift_Del DEL T T - novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . SELE NM_000450 exon6 c.782delG p.S261fs . . 250.0 97.0 235.0 0.0 . 84 . 0.388 0 none . . PASS Atlas-INDEL ANGEL1 23357 hgsc.bcm.edu hg19 14 77274402 77274411 + Frame_Shift_Del DEL GAGTGAACTG GAGTGAACTG - novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 GAGTGAACTG GAGTGAACTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . ANGEL1 NM_015305 exon3 c.731_740del p.244_247del . . 121.0 26.0 121.0 0.0 . 63 . 0.214876 0 none . . PASS Atlas-INDEL PIPOX 51268 hgsc.bcm.edu hg19 17 27370356 27370357 + Frame_Shift_Ins INS - - G novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . PIPOX NM_016518 exon1 c.113_114insG p.Q38fs . . 156.0 78.0 91.0 0.0 . 42 . 0.5 0 none . . PASS Atlas-INDEL FBN3 84467 hgsc.bcm.edu hg19 19 8182139 8182139 + Frame_Shift_Del DEL T T - novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . FBN3 NM_032447 exon27 c.3501delC p.D1167fs . . 62.0 14.0 86.0 0.0 . 300 . 0.225806 0 none . . PASS Atlas-INDEL EP300 2033 hgsc.bcm.edu hg19 22 41574679 41574681 + In_Frame_Del DEL CCC CCC - novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 CCC CCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . EP300 NM_001429 exon31 c.6963_6965del p.2321_2322del . . 146.0 38.0 135.0 0.0 . 367 . 0.260274 0 none . . PASS Atlas-INDEL CEP350 9857 hgsc.bcm.edu hg19 1 179965912 179965912 + Frame_Shift_Del DEL A A - novel TCGA-B3-4103-01A-01D-1458-08 TCGA-B3-4103-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 62fba643-8f61-4d98-afe1-fbfeca74cdfa 3fbd8531-47c5-4f07-9928-0b4e7cd5aad5 . CEP350 NM_014810 exon6 c.619delC p.Q207fs . . 55.0 12.0 44.0 0.0 . 418 . 0.218182 0 none . . PASS Atlas-INDEL