Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm ADAM15 8751 hgsc.bcm.edu hg19 1 155032387 155032387 + Missense_Mutation SNP A A T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . ADAM15 NM_001261464 exon17 c.A2035T p.S679C TGTGACAGCAACA . 458.0 179.0 406.0 0.0 . 92 . . . none . . PASS Atlas-SNP ASH1L 55870 hgsc.bcm.edu hg19 1 155408153 155408153 + Silent SNP T T A novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . ASH1L NM_018489 exon5 c.A5793T p.P1931P TGGTAATGGCTTC . 228.0 76.0 331.0 0.0 . 279 . . . none . . PASS Atlas-SNP ISG20L2 81875 hgsc.bcm.edu hg19 1 156693972 156693972 + Missense_Mutation SNP G G A novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . ISG20L2 NM_030980 exon2 c.C916T p.L306F TGGTGAGATGCTT . 226.0 21.0 239.0 0.0 . 43 . . . none . . PASS Atlas-SNP IGSF9 57549 hgsc.bcm.edu hg19 1 159898194 159898194 + Missense_Mutation SNP G G T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . IGSF9 NM_001135050 exon19 c.C2984A p.P995H GTGTAAGGGGGCT . 15.0 8.0 26.0 0.0 . 123 . . . none . . PASS Atlas-SNP PROX1 5629 hgsc.bcm.edu hg19 1 214178606 214178606 + Silent SNP C C T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 PROX1,NS,carcinoma,0,2 PROX1 NM_001270616 exon3 c.C1824T p.S608S CTTCTCCGACGTA . 91.0 29.0 148.0 0.0 . 124 . . . none . . PASS Atlas-SNP BPNT1 10380 hgsc.bcm.edu hg19 1 220232235 220232235 + Missense_Mutation SNP T T C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . BPNT1 NM_006085 exon9 c.A878G p.Y293C GCATAGTAGTCAT . 268.0 74.0 383.0 0.0 . 29 . . . none . . PASS Atlas-SNP PRKCE 5581 hgsc.bcm.edu hg19 2 46372319 46372319 + Silent SNP T T C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . PRKCE NM_005400 exon12 c.T1680C p.N560N TCTGAATGGTGTG . 266.0 108.0 264.0 1.0 . 58 . . . none . . PASS Atlas-SNP DCTN1 1639 hgsc.bcm.edu hg19 2 74589259 74589259 + Missense_Mutation SNP G G C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . DCTN1 NM_004082 exon31 c.C3619G p.L1207V CCTTGAGGACCTC . 80.0 41.0 89.0 0.0 . 110 . . . none . . PASS Atlas-SNP RGPD3 653489 hgsc.bcm.edu hg19 2 107049613 107049613 + Silent SNP A A G novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 RGPD3_ENST00000304514,NS,carcinoma,0,2 RGPD3 NM_001144013 exon16 c.T2334C p.H778H TGTAGAATGTTTT . 381.0 104.0 593.0 0.0 . 316 . . . none . . PASS Atlas-SNP DPP10 57628 hgsc.bcm.edu hg19 2 116598392 116598392 + Missense_Mutation SNP C C A rs201639501 bycluster;alternate_allele TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . DPP10 NM_001178034 exon25 c.C2261A p.T754N ATTATACTATGCA . 74.0 34.0 109.0 0.0 . 415 . . . alt C|0.999;G|0.001 . PASS Atlas-SNP ITGB6 3694 hgsc.bcm.edu hg19 2 160982928 160982928 + Silent SNP T T C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . ITGB6 NM_000888 exon11 c.A1845G p.E615E ACATCGTTCACAG . 161.0 15.0 149.0 0.0 . 68 . . . none . . PASS Atlas-SNP ACADL 33 hgsc.bcm.edu hg19 2 211081149 211081149 + Missense_Mutation SNP T T C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . ACADL NM_001608 exon4 c.A458G p.Q153R TTAATCTGTTCTT . 68.0 22.0 258.0 0.0 . 38 . . . none . . PASS Atlas-SNP BARD1 580 hgsc.bcm.edu hg19 2 215593624 215593624 + Missense_Mutation SNP T T G novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . BARD1 NM_000465 exon11 c.A2110C p.S704R TTCTACTGAGGAT . 59.0 36.0 107.0 0.0 . 138 . . . none . . PASS Atlas-SNP STK25 10494 hgsc.bcm.edu hg19 2 242437690 242437690 + Missense_Mutation SNP C C A novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . STK25 NM_006374 exon9 c.G992T p.S331I AGCTTGCTGTGTG . 237.0 10.0 228.0 0.0 . 32 . . . none . . PASS Atlas-SNP BHLHE40 8553 hgsc.bcm.edu hg19 3 5024904 5024904 + Missense_Mutation SNP A A T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . BHLHE40 NM_003670 exon5 c.A766T p.S256C TTGCGCAGTGAGC . 146.0 92.0 98.0 0.0 . 35 . . . none . . PASS Atlas-SNP SLC6A6 6533 hgsc.bcm.edu hg19 3 14508150 14508150 + Missense_Mutation SNP G G A novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . SLC6A6 NM_003043 exon7 c.G859A p.D287N CTTGAGGACCCAC . 191.0 115.0 121.0 0.0 . 58 . . . none . . PASS Atlas-SNP BAP1 8314 hgsc.bcm.edu hg19 3 52441417 52441417 + Silent SNP G G C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . BAP1 NM_004656 exon6 c.C435G p.A145A ACACCTGGCATGG . 235.0 68.0 191.0 0.0 . 371 . . . none . . PASS Atlas-SNP PDZRN3 23024 hgsc.bcm.edu hg19 3 73432828 73432828 + Silent SNP C C T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 PDZRN3,rectum,carcinoma,0,2 PDZRN3 NM_015009 exon10 c.G2889A p.A963A GCTCACCGCGTCG . 278.0 79.0 147.0 0.0 . 196 . . . none . . PASS Atlas-SNP SLC2A2 6514 hgsc.bcm.edu hg19 3 170732492 170732492 + Missense_Mutation SNP A A G novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . SLC2A2 NM_000340 exon3 c.T137C p.L46S ACACCCAAAACAT . 201.0 53.0 238.0 0.0 . 71 . . . none . . PASS Atlas-SNP EIF2B5 8893 hgsc.bcm.edu hg19 3 183861938 183861938 + Missense_Mutation SNP G G A novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 EIF2B5,NS,carcinoma,0,1 EIF2B5 NM_003907 exon14 c.G1921A p.D641N GCAGCCGACCATT . 515.0 142.0 410.0 1.0 . 62 . . . none . . PASS Atlas-SNP CD180 4064 hgsc.bcm.edu hg19 5 66479676 66479676 + Missense_Mutation SNP T T C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . CD180 NM_005582 exon3 c.A995G p.H332R TCGAAATGATTTA . 210.0 89.0 286.0 1.0 . 78 . . . none . . PASS Atlas-SNP SPINK5 11005 hgsc.bcm.edu hg19 5 147505159 147505159 + Missense_Mutation SNP G G T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . SPINK5 NM_001127698 exon29 c.G2812T p.V938F GCCTCTGTTGCCA . 57.0 27.0 100.0 0.0 . 245 . . . none . . PASS Atlas-SNP MSH5 4439 hgsc.bcm.edu hg19 6 31712029 31712029 + Silent SNP A A G novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . MSH5 NM_025259 exon7 c.A651G p.E217E ACTGGAAGACTAT . 195.0 63.0 211.0 0.0 . 108 . . . none . . PASS Atlas-SNP LRRC1 55227 hgsc.bcm.edu hg19 6 53787458 53787458 + Missense_Mutation SNP C C A novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . LRRC1 NM_018214 exon14 c.C1442A p.P481Q CCACTCCACACCC . 214.0 189.0 237.0 0.0 . 59 . . . none . . PASS Atlas-SNP BAI3 577 hgsc.bcm.edu hg19 6 69759168 69759168 + Missense_Mutation SNP G G C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 BAI3,colon,carcinoma,-1,3 BAI3 NM_001704 exon15 c.G2263C p.D755H GAATTAGATGAAT . 27.0 2.0 112.0 0.0 . 451 . . . none . . PASS Atlas-SNP ARL4A 10124 hgsc.bcm.edu hg19 7 12728407 12728407 + Missense_Mutation SNP G G C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . ARL4A NM_001037164 exon2 c.G528C p.K176N CCTAAAGGAAGGA . 168.0 70.0 197.0 0.0 . 15 . . . none . . PASS Atlas-SNP CAMK2B 816 hgsc.bcm.edu hg19 7 44259810 44259810 + Missense_Mutation SNP C C T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . CAMK2B NM_001220 exon23 c.G1852A p.A618T TGTAAGCGATGCA . 76.0 8.0 45.0 0.0 . 56 . . . none . . PASS Atlas-SNP LANCL2 55915 hgsc.bcm.edu hg19 7 55459595 55459595 + Missense_Mutation SNP G G C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . LANCL2 NM_018697 exon2 c.G314C p.G105A ATACTGGCTGGAC . 214.0 34.0 142.0 0.0 . 54 . . . none . . PASS Atlas-SNP ABCB1 5243 hgsc.bcm.edu hg19 7 87148688 87148688 + Missense_Mutation SNP C C T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . ABCB1 NM_000927 exon24 c.G2881A p.A961T AGTAGGCTCCAAA . 104.0 40.0 140.0 0.0 . 263 . . . none . . PASS Atlas-SNP CALD1 800 hgsc.bcm.edu hg19 7 134618538 134618538 + Missense_Mutation SNP G G A novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 CALD1,NS,carcinoma,0,1 CALD1 NM_033138 exon5 c.G1018A p.E340K GCAGCAGAGGAGA . 31.0 2.0 14.0 0.0 . 150 . . . none . . PASS Atlas-SNP TMEM67 91147 hgsc.bcm.edu hg19 8 94792858 94792858 + Missense_Mutation SNP A A C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . TMEM67 NM_153704 exon8 c.A752C p.N251T TTGGAAATATGTG . 291.0 134.0 444.0 1.0 . 187 . . . none . . PASS Atlas-SNP ZNF658 26149 hgsc.bcm.edu hg19 9 40774146 40774146 + Nonsense_Mutation SNP C C A novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . ZNF658 NM_033160 exon5 c.G1129T p.E377X TATCTTCTGTGTG . 251.0 105.0 701.0 0.0 . 100 . . . none . . PASS Atlas-SNP COL5A1 1289 hgsc.bcm.edu hg19 9 137714852 137714852 + Silent SNP T T C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . COL5A1 NM_000093 exon60 c.T4617C p.P1539P TCCGCCTGGTCCA . 61.0 12.0 53.0 0.0 . 323 . . . none . . PASS Atlas-SNP ZNF503 84858 hgsc.bcm.edu hg19 10 77159027 77159027 + Missense_Mutation SNP G G T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . ZNF503 NM_032772 exon2 c.C1421A p.P474Q TGCAGCGGGTGCG . 50.0 32.0 20.0 0.0 . 25 . . . none . . PASS Atlas-SNP CTBP2 1488 hgsc.bcm.edu hg19 10 126715159 126715159 + Silent SNP A A G novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 .,1 CTBP2 NM_022802 exon1 c.T1170C p.A390A CAGAGGAGCCGCA . 15.0 3.0 4.0 0.0 . 100 . . . none . . PASS Atlas-SNP KNDC1 85442 hgsc.bcm.edu hg19 10 135009191 135009191 + Missense_Mutation SNP G G A novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . KNDC1 NM_152643 exon10 c.G1600A p.V534I GCCGCCGTTCTGT . 55.0 21.0 44.0 0.0 . 155 . . . none . . PASS Atlas-SNP OR5P2 120065 hgsc.bcm.edu hg19 11 7817940 7817940 + Missense_Mutation SNP A A T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . OR5P2 NM_153444 exon1 c.T550A p.S184T AACAGGAGAGTTC . 82.0 31.0 128.0 0.0 . 68 . . . none . . PASS Atlas-SNP NXF1 10482 hgsc.bcm.edu hg19 11 62567921 62567921 + Missense_Mutation SNP A A G novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . NXF1 NM_006362 exon10 c.T944C p.L315P AGCTTCAGCCCCT . 80.0 27.0 92.0 0.0 . 67 . . . none . . PASS Atlas-SNP LTBR 4055 hgsc.bcm.edu hg19 12 6494285 6494285 + Silent SNP C C T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . LTBR NM_002342 exon3 c.C291T p.I97I GACCATCTGCCAG . 446.0 261.0 280.0 0.0 . 30 . . . none . . PASS Atlas-SNP TM7SF3 51768 hgsc.bcm.edu hg19 12 27156249 27156249 + Missense_Mutation SNP G G T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . TM7SF3 NM_016551 exon2 c.C166A p.H56N TATCATGCAAAAT . 65.0 23.0 103.0 0.0 . 41 . . . none . . PASS Atlas-SNP TIMELESS 8914 hgsc.bcm.edu hg19 12 56822670 56822670 + Missense_Mutation SNP C C T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . TIMELESS NM_003920 exon11 c.G1301A p.R434H CACCGGCGTGCCC . 116.0 32.0 90.0 0.0 . 107 . . . none . . PASS Atlas-SNP GRIP1 23426 hgsc.bcm.edu hg19 12 66765685 66765685 + Missense_Mutation SNP G G A rs367781032 TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 GRIP1,NS,carcinoma,0,1 GRIP1 NM_021150 exon22 c.C2645T p.T882M CTCATCGTGCTCC . 187.0 51.0 133.0 0.0 . 106 . . . weak . . PASS Atlas-SNP SSH1 54434 hgsc.bcm.edu hg19 12 109182194 109182194 + Missense_Mutation SNP T T A novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . SSH1 NM_018984 exon15 c.A2720T p.H907L CTGGTGTGGTCCA . 200.0 133.0 94.0 0.0 . 144 . . . none . . PASS Atlas-SNP KIAA0586 9786 hgsc.bcm.edu hg19 14 58949256 58949256 + Silent SNP C C T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . KIAA0586 NM_001244189 exon23 c.C3129T p.L1043L CGCCCTCCAGCTT . 55.0 26.0 77.0 0.0 . 180 . . . none . . PASS Atlas-SNP TRIP11 9321 hgsc.bcm.edu hg19 14 92491671 92491671 + Missense_Mutation SNP G G C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . TRIP11 NM_004239 exon3 c.C295G p.Q99E GAAGTTGATTTCG . 53.0 28.0 116.0 0.0 . 184 . . . none . . PASS Atlas-SNP USP3 9960 hgsc.bcm.edu hg19 15 63882867 63882867 + Missense_Mutation SNP T T G novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . USP3 NM_006537 exon15 c.T1405G p.S469A GTTGGTTCTGGAC . 207.0 79.0 179.0 0.0 . 37 . . . none . . PASS Atlas-SNP CRTC3 64784 hgsc.bcm.edu hg19 15 91161146 91161146 + Missense_Mutation SNP G G C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . CRTC3 NM_022769 exon8 c.G645C p.E215D AGAAGAGAATCTG . 102.0 42.0 99.0 0.0 . 47 . . . none . . PASS Atlas-SNP CACNA1H 8912 hgsc.bcm.edu hg19 16 1263882 1263882 + Missense_Mutation SNP T T C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . CACNA1H NM_021098 exon27 c.T4880C p.I1627T TCATCATCTGTGT . 34.0 21.0 20.0 0.0 . 317 . . . none . . PASS Atlas-SNP SRCAP 10847 hgsc.bcm.edu hg19 16 30736125 30736125 + Missense_Mutation SNP C C G rs371358460 TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . SRCAP NM_006662 exon25 c.C5380G p.P1794A CCTGCCCCAGTTC . 98.0 32.0 49.0 0.0 . 298 . . . weak . . PASS Atlas-SNP NEK8 284086 hgsc.bcm.edu hg19 17 27067537 27067537 + Missense_Mutation SNP C C G novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . NEK8 NM_178170 exon11 c.C1474G p.P492A CCCATGCCCCCAG . 324.0 87.0 202.0 0.0 . 76 . . . none . . PASS Atlas-SNP CACNB1 782 hgsc.bcm.edu hg19 17 37331566 37331566 + Silent SNP C C T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . CACNB1 NM_000723 exon14 c.G1677A p.L559L GTCGGTCAGCTCT . 853.0 268.0 575.0 1.0 . 89 . . . none . . PASS Atlas-SNP CDC6 990 hgsc.bcm.edu hg19 17 38447499 38447499 + Missense_Mutation SNP C C T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . CDC6 NM_001254 exon3 c.C368T p.S123L TTTCTTCAGTTAG . 184.0 108.0 123.0 0.0 . 53 . . . none . . PASS Atlas-SNP KCNJ2 3759 hgsc.bcm.edu hg19 17 68171425 68171425 + Missense_Mutation SNP G G A rs199473653 TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . KCNJ2 NM_000891 exon2 c.G245A p.R82Q GCTGGCGGTGGAT . 310.0 108.0 256.0 0.0 . 74 . . . weak . . PASS Atlas-SNP RAB37 326624 hgsc.bcm.edu hg19 17 72736931 72736931 + Missense_Mutation SNP G G A novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . RAB37 NM_001163989 exon2 c.G133A p.V45I ACAGGCGTCGGCA . 508.0 34.0 351.0 0.0 . 69 . . . none . . PASS Atlas-SNP ACOX1 51 hgsc.bcm.edu hg19 17 73945931 73945931 + Missense_Mutation SNP C C T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . ACOX1 NM_007292 exon10 c.G1346A p.C449Y ATGCCACACACCA . 178.0 100.0 138.0 0.0 . 85 . . . none . . PASS Atlas-SNP GAREM 64762 hgsc.bcm.edu hg19 18 29867890 29867890 + Missense_Mutation SNP G G A novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . . NM_022751 exon4 c.C670T p.P224S CCAGGGGACTTCG . 139.0 55.0 187.0 0.0 . . . . . none . . PASS Atlas-SNP HMSD 284293 hgsc.bcm.edu hg19 18 61621714 61621714 + Missense_Mutation SNP A A G novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . HMSD NM_001123366 exon3 c.A145G p.I49V GTTGCAATTAACA . 156.0 13.0 269.0 0.0 . 16 . . . none . . PASS Atlas-SNP COL5A3 50509 hgsc.bcm.edu hg19 19 10096525 10096525 + Missense_Mutation SNP C C T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . COL5A3 NM_015719 exon31 c.G2399A p.G800E TTAGGTCCAGGGC . 473.0 258.0 571.0 1.0 . 243 . . . none . . PASS Atlas-SNP SMARCA4 6597 hgsc.bcm.edu hg19 19 11141551 11141551 + Missense_Mutation SNP C C G novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . SMARCA4 NM_003072 exon25 c.C3528G p.S1176R TGACAGCGACTGG . 37.0 19.0 22.0 0.0 . 502 . . . none . . PASS Atlas-SNP PLEKHG2 64857 hgsc.bcm.edu hg19 19 39915323 39915323 + Missense_Mutation SNP C C T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . PLEKHG2 NM_022835 exon19 c.C3550T p.P1184S CCGGAGCCAAGCC . 319.0 126.0 292.0 0.0 . 329 . . . none . . PASS Atlas-SNP MEGF8 1954 hgsc.bcm.edu hg19 19 42872696 42872696 + Silent SNP T T C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . MEGF8 NM_001271938 exon36 c.T6363C p.C2121C GGGCTGTGCTCAG . 29.0 13.0 28.0 0.0 . 358 . . . none . . PASS Atlas-SNP PPP1R12C 54776 hgsc.bcm.edu hg19 19 55603617 55603617 + Silent SNP G G C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . PPP1R12C NM_017607 exon19 c.C2133G p.L711L CACCTTGAGCTGC . 18.0 5.0 16.0 0.0 . 46 . . . none . . PASS Atlas-SNP FASTKD5 60493 hgsc.bcm.edu hg19 20 3128940 3128940 + Silent SNP A A G novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . FASTKD5 NM_021826 exon2 c.T777C p.P259P AAACCTAGGTACT . 122.0 36.0 126.0 0.0 . 63 . . . none . . PASS Atlas-SNP ZHX3 23051 hgsc.bcm.edu hg19 20 39831715 39831715 + Silent SNP G G T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . ZHX3 NM_015035 exon3 c.C1842A p.T614T GTATTTGGTTGGT . 281.0 176.0 164.0 0.0 . 78 . . . none . . PASS Atlas-SNP DSCAM 1826 hgsc.bcm.edu hg19 21 41710196 41710196 + Missense_Mutation SNP T T C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . DSCAM NM_001271534 exon8 c.A1615G p.K539E AGTTCTTGTACCA . 103.0 80.0 235.0 0.0 . 347 . . . none . . PASS Atlas-SNP IGLL5 100423062 hgsc.bcm.edu hg19 22 23237695 23237695 + Missense_Mutation SNP C C T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . IGLL5 NM_001178126 exon3 c.C466T p.P156S GGCAGCCCCGTCA . 54.0 21.0 48.0 0.0 . 26 . . . none . . PASS Atlas-SNP EIF4ENIF1 56478 hgsc.bcm.edu hg19 22 31837941 31837941 + Silent SNP T T C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . EIF4ENIF1 NM_019843 exon17 c.A2370G p.R790R TGTTTTTCTCCCA . 184.0 19.0 185.0 0.0 . 80 . . . none . . PASS Atlas-SNP CELSR1 9620 hgsc.bcm.edu hg19 22 46931045 46931045 + Missense_Mutation SNP T T C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . CELSR1 NM_014246 exon1 c.A2023G p.I675V CCGTGATGGACAC . 43.0 13.0 26.0 0.0 . 242 . . . none . . PASS Atlas-SNP MBTPS2 51360 hgsc.bcm.edu hg19 X 21857904 21857904 + Missense_Mutation SNP T T C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . MBTPS2 NM_015884 exon1 c.T52C p.Y18H GTCGTCTACCTGA . 5.0 5.0 9.0 0.0 . 52 . . . none . . PASS Atlas-SNP SPIN3 169981 hgsc.bcm.edu hg19 X 57021007 57021007 + Missense_Mutation SNP G G C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . SPIN3 NM_001010862 exon2 c.C374G p.A125G ATTTCTGCCAAGT . 217.0 11.0 287.0 0.0 . 33 . . . none . . PASS Atlas-SNP ND1 10625 hgsc.bcm.edu hg19 MT 3890 3890 + Missense_Mutation SNP G G A novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . . ENST00000361390 exon1 c.G584A p.R195Q CCAACCGAACCCC . 111.0 105.0 10.0 0.0 . . . . . none . . PASS Atlas-SNP COX3 5742 hgsc.bcm.edu hg19 MT 9612 9612 + Missense_Mutation SNP G G A novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . . ENST00000362079 exon1 c.G406A p.V136M ACATCCGTATTAC . 79.0 8.0 11.0 0.0 . . . . . none . . PASS Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 12640 12640 + Missense_Mutation SNP G G A novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . . ENST00000361567 exon1 c.G304A p.E102K ATCATAGAATTCT . 61.0 7.0 15.0 0.0 . . . . . none . . PASS Atlas-SNP ND6 0 hgsc.bcm.edu hg19 MT 14348 14348 + Missense_Mutation SNP T T C novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . . ENST00000361681 exon1 c.A326G p.Y109C CCATCATACTCTT . 91.0 6.0 19.0 0.0 . . . . . none . . PASS Atlas-SNP BPNT1 10380 hgsc.bcm.edu hg19 1 220232228 220232229 + Frame_Shift_Ins INS - - GCATA novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . BPNT1 NM_006085 exon9 c.885_886insTATGC p.A295fs . . 296.0 28.0 413.0 0.0 . 29 . 0.0945946 0 none . . PASS Atlas-INDEL DDX5 1655 hgsc.bcm.edu hg19 17 62500099 62500102 + Frame_Shift_Del DEL ACAG ACAG - novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 ACAG ACAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . DDX5 NM_004396 exon4 c.441_441del p.147_147del . . 179.0 45.0 294.0 0.0 . 101 . 0.251397 0 none . . PASS Atlas-INDEL KCNS2 3788 hgsc.bcm.edu hg19 8 99441466 99441466 + Frame_Shift_Del DEL A A - novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . KCNS2 NM_020697 exon2 c.1258delC p.Q420fs . . 271.0 114.0 273.0 0.0 . 93 . 0.420664 0 none . . PASS Atlas-INDEL CD248 57124 hgsc.bcm.edu hg19 11 66082566 66082566 + Frame_Shift_Del DEL T T - novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . CD248 NM_020404 exon1 c.1934delT p.I645fs . . 148.0 64.0 143.0 0.0 . 69 . 0.432432 0 none . . PASS Atlas-INDEL EIF5 1983 hgsc.bcm.edu hg19 14 103807312 103807312 + Frame_Shift_Del DEL A A - novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . EIF5 NM_183004 exon11 c.1218delG p.S406fs . . 54.0 16.0 118.0 0.0 . 40 . 0.296296 0 none . . PASS Atlas-INDEL ZNF17 7565 hgsc.bcm.edu hg19 19 57931956 57931959 + Frame_Shift_Del DEL TTCT TTCT - novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 TTCT TTCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . ZNF17 NM_006959 exon3 c.1095_1098del p.365_366del . . 145.0 15.0 245.0 0.0 . 49 . 0.103448 0 none . . PASS Atlas-INDEL NXF1 10482 hgsc.bcm.edu hg19 11 62567920 62567921 + Frame_Shift_Ins INS - - G novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . NXF1 NM_006362 exon10 c.945_946insC p.L315fs . . 87.0 23.0 95.0 0.0 . 67 . 0.264368 0 none . . PASS Atlas-INDEL ATP7B 540 hgsc.bcm.edu hg19 13 52548120 52548120 + Frame_Shift_Del DEL T T - novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . ATP7B NM_000053 exon2 c.1237delC p.L413fs . . 147.0 59.0 163.0 0.0 . 123 . 0.401361 0 none . . PASS Atlas-INDEL LY9 4063 hgsc.bcm.edu hg19 1 160771585 160771585 + Frame_Shift_Del DEL T T - novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . LY9 NM_001033667 exon3 c.459delA p.P153fs . . 284.0 121.0 251.0 0.0 . 115 . 0.426056 0 none . . PASS Atlas-INDEL NR2F2 7026 hgsc.bcm.edu hg19 15 96875754 96875755 + Frame_Shift_Ins INS - - T novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . NR2F2 NM_021005 exon1 c.420_421insT p.L140fs . . 87.0 23.0 72.0 0.0 . 35 . 0.264368 0 none . . PASS Atlas-INDEL OR2J3 442186 hgsc.bcm.edu hg19 6 29080474 29080475 + Frame_Shift_Del DEL TT TT - novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 TT TT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . OR2J3 NM_001005216 exon1 c.806_807del p.269_269del . . 89.0 79.0 216.0 0.0 . 53 . 0.88764 0 none . . PASS Atlas-INDEL PCSK2 5126 hgsc.bcm.edu hg19 20 17207956 17207957 + In_Frame_Ins INS - - GGT novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . PCSK2 NM_002594 exon1 c.6_7insGGT p.K2delinsKG . . 218.0 92.0 193.0 0.0 . 112 . 0.422018 0 none . . PASS Atlas-INDEL POLDIP3 84271 hgsc.bcm.edu hg19 22 42998037 42998037 + Frame_Shift_Del DEL G G - novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . POLDIP3 NM_032311 exon3 c.477delA p.P159fs . . 201.0 80.0 243.0 0.0 . 58 . 0.39801 0 none . . PASS Atlas-INDEL SPATA31D1 389763 hgsc.bcm.edu hg19 9 84609703 84609703 + Frame_Shift_Del DEL A A - novel TCGA-AL-3468-01A-01D-1252-08 TCGA-AL-3468-10A-01D-1252-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3ace8906-6fda-48fe-8e46-4140e9ed7fce e04284b9-b5a9-481b-b1bb-0377a566a154 . . NM_001001670 exon4 c.4317delG p.G1439fs . . 85.0 29.0 87.0 0.0 . . . 0.341176 0 none . . PASS Atlas-INDEL