Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
AMD1	262	hgsc.bcm.edu	hg19	6	111208734	111208734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	AMD1	NM_001634	exon2	c.A137G	p.D46G	TGAAGGATGTGCA	.	305.0	53.0	271.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
SNX13	23161	hgsc.bcm.edu	hg19	7	17836512	17836512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	SNX13	NM_015132	exon25	c.A2564G	p.D855G	CTTTTATCTCTGC	.	149.0	14.0	288.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
BRAF	673	hgsc.bcm.edu	hg19	7	140453136	140453136	+	Missense_Mutation	SNP	A	A	T	rs121913227	bycluster	TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	BRAF,NS,adenoma,0,1	BRAF	NM_004333	exon15	c.T1799A	p.V600E	GATTTCACTGTAG	.	127.0	50.0	189.0	0.0	.	36346	.	.	.	weak	.	.	PASS	Atlas-SNP
GYLTL1B	120071	hgsc.bcm.edu	hg19	11	45948105	45948105	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	GYLTL1B	NM_152312	exon9	c.A1121C	p.E374A	GGAGAGAGCTCTT	.	104.0	35.0	92.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
CPNE6	9362	hgsc.bcm.edu	hg19	14	24544466	24544466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CPNE6	NM_006032	exon8	c.C758A	p.T253K	AAGGGACGGCAAA	.	271.0	121.0	250.0	1.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
NPAS3	64067	hgsc.bcm.edu	hg19	14	34263109	34263109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	NPAS3	NM_001164749	exon10	c.A1160G	p.N387S	TGCTGAATAAGGG	.	199.0	16.0	196.0	0.0	.	266	.	.	.	none	.	.	PASS	Atlas-SNP
GCOM1	145781	hgsc.bcm.edu	hg19	15	57922023	57922023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	GCOM1	NM_001018090	exon6	c.C649G	p.Q217E	GTAGCGCAAGTTG	.	109.0	5.0	114.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30745323	30745323	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	SRCAP,NS,carcinoma,0,2	SRCAP	NM_006662	exon30	c.C6603G	p.F2201L	CTATTTCAAACAG	.	34.0	2.0	27.0	0.0	.	298	.	.	.	none	.	.	PASS	Atlas-SNP
CDH8	1006	hgsc.bcm.edu	hg19	16	61891030	61891030	+	Silent	SNP	A	A	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CDH8	NM_001796	exon4	c.T660G	p.P220P	TGTTTCAGGCTCA	.	109.0	35.0	146.0	0.0	.	273	.	.	.	none	.	.	PASS	Atlas-SNP
CDH8	1006	hgsc.bcm.edu	hg19	16	61891031	61891031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CDH8	NM_001796	exon4	c.C659A	p.P220H	GTTTCAGGCTCAA	.	108.0	34.0	145.0	0.0	.	273	.	.	.	none	.	.	PASS	Atlas-SNP
CDC27	996	hgsc.bcm.edu	hg19	17	45249350	45249350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27	NM_001114091	exon3	c.A184G	p.K62E	GTCCTTTCAAGAG	.	80.0	4.0	99.0	2.0	.	337	.	.	.	none	.	.	PASS	Atlas-SNP
TBX4	9496	hgsc.bcm.edu	hg19	17	59560359	59560359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	TBX4,colon,carcinoma,0,1	TBX4	NM_018488	exon8	c.G1120A	p.D374N	CCCTACGACCAGC	.	91.0	6.0	91.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	hg19	22	46785299	46785299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CELSR1	NM_014246	exon18	c.T6443C	p.L2148P	CCAAAGAGCGTGC	.	107.0	6.0	93.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	6929	6929	+	Silent	SNP	A	A	G	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	.	ENST00000361624	exon1	c.A1026G	p.L342L	AGCCCTAGGATTC	.	9.0	9.0	0.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZMYND15	84225	hgsc.bcm.edu	hg19	17	4645266	4645266	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	ZMYND15	NM_001136046	exon4	c.883delC	p.R295fs	.	.	224.0	83.0	222.0	0.0	.	87	.	0.370536	0	none	.	.	PASS	Atlas-INDEL