Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
KCNC4	3749	hgsc.bcm.edu	hg19	1	110774916	110774916	+	Silent	SNP	G	G	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KCNC4	NM_004978	exon4	c.G1893A	p.L631L	GACTCTGTTCCTG	.	32.0	10.0	25.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
NBPF14	25832	hgsc.bcm.edu	hg19	1	148015634	148015634	+	Missense_Mutation	SNP	T	T	C	rs200156420	bycluster	TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	NBPF14_ENST00000310701,bladder,carcinoma,-1,2	NBPF14	NM_015383	exon8	c.A997G	p.N333D	CCATGTTAACAGC	.	58.0	3.0	46.0	1.0	.	107	.	.	.	weak	.	.	PASS	Atlas-SNP
LINGO4	339398	hgsc.bcm.edu	hg19	1	151774638	151774638	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	LINGO4	NM_001004432	exon2	c.G543C	p.K181N	GCTCAACTTGGCT	.	101.0	6.0	115.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228487735	228487735	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	OBSCN	NM_001271223	exon51	c.C13627G	p.Q4543E	CTGAAGCAGGATG	.	97.0	4.0	120.0	0.0	.	2142	.	.	.	none	.	.	PASS	Atlas-SNP
SLC16A14	151473	hgsc.bcm.edu	hg19	2	230910735	230910735	+	Silent	SNP	G	G	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	SLC16A14,NS,carcinoma,0,1	SLC16A14	NM_152527	exon4	c.C1107T	p.I369I	GCCCAGGATCACT	.	105.0	23.0	101.0	1.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	hg19	3	113376113	113376113	+	Silent	SNP	C	C	T	rs62265537		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	KIAA2018,rectum,carcinoma,0,1	KIAA2018	NM_001009899	exon7	c.G4416A	p.Q1472Q	CTGTTGCTGCTGC	.	43.0	4.0	34.0	0.0	.	180	.	.	.	weak	.	.	PASS	Atlas-SNP
LMLN	89782	hgsc.bcm.edu	hg19	3	197687183	197687183	+	Missense_Mutation	SNP	T	T	A	rs375365578		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	LMLN	NM_001136049	exon1	c.T91A	p.W31R	TGGCGCTGGAGCG	.	97.0	19.0	136.0	0.0	.	53	.	.	.	weak	.	.	PASS	Atlas-SNP
TBC1D9B	23061	hgsc.bcm.edu	hg19	5	179320253	179320253	+	Silent	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	TBC1D9B_ENST00000356834,right_upper_lobe,carcinoma,0,2	TBC1D9B	NM_198868	exon5	c.G792C	p.L264L	CCTAGGCAGGGCC	.	43.0	2.0	55.0	0.0	.	157	.	.	.	none	.	.	PASS	Atlas-SNP
KCNK5	8645	hgsc.bcm.edu	hg19	6	39161945	39161945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KCNK5	NM_003740	exon4	c.G634A	p.G212S	ACTCACCGGCCAC	.	78.0	20.0	65.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
TDRD6	221400	hgsc.bcm.edu	hg19	6	46658247	46658247	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	TDRD6	NM_001168359	exon1	c.C2382G	p.N794K	CAGGAACATACAA	.	79.0	10.0	74.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	68995502	68995502	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PREX2	NM_025170	exon18	c.A1906T	p.I636F	AAAAAGATTTTTG	.	78.0	6.0	58.0	0.0	.	614	.	.	.	none	.	.	PASS	Atlas-SNP
KDM4C	23081	hgsc.bcm.edu	hg19	9	7015904	7015904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KDM4C	NM_001146696	exon15	c.G2300A	p.R767Q	GTGCCCGGTGCAA	.	83.0	4.0	62.0	0.0	.	186	.	.	.	none	.	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1258389	1258389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	MUC5B,NS,carcinoma,0,2	MUC5B	NM_002458	exon25	c.T3292G	p.S1098A	TGCCGCTCCCAGG	.	24.0	2.0	43.0	0.0	.	473	.	.	.	none	.	.	PASS	Atlas-SNP
MRVI1	10335	hgsc.bcm.edu	hg19	11	10626061	10626061	+	Missense_Mutation	SNP	C	C	G	rs374023004	alternate_allele	TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	MRVI1_ENST00000547195,NS,carcinoma,0,2	MRVI1	NM_130385	exon13	c.G1634C	p.R545T	TCATTTCTAAAGG	.	82.0	18.0	130.0	0.0	.	113	.	.	.	alt	.	.	PASS	Atlas-SNP
ANAPC7	51434	hgsc.bcm.edu	hg19	12	110813921	110813921	+	Silent	SNP	T	T	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ANAPC7	NM_016238	exon10	c.A1560G	p.V520V	GACAGCTACAAGG	.	75.0	14.0	76.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
ITGB3	3690	hgsc.bcm.edu	hg19	17	45361999	45361999	+	Missense_Mutation	SNP	C	C	A	rs202100960		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ITGB3	NM_000212	exon4	c.C552A	p.D184E	TGTGGACAAGCCT	.	281.0	15.0	247.0	0.0	.	157	.	.	.	weak	.	.	PASS	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22941316	22941316	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	ZNF99,NS,carcinoma,0,1	ZNF99	NM_001080409	exon4	c.T1395G	p.F465L	GGCTGAAAAATTG	.	50.0	2.0	45.0	0.0	.	273	.	.	.	none	.	.	PASS	Atlas-SNP
FATE1	89885	hgsc.bcm.edu	hg19	X	150891105	150891105	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	FATE1	NM_033085	exon5	c.T426G	p.Y142X	GCTGTATGCAGTC	.	98.0	4.0	84.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	11447	11447	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	.	ENST00000361381	exon1	c.G688C	p.V230L	TCAATAGTACTTG	.	19.0	4.0	1.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12403	12403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	.	ENST00000361567	exon1	c.C67T	p.L23F	ACCACCCTCGTTA	.	19.0	19.0	0.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15247	15247	+	Silent	SNP	C	C	G	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	.	ENST00000361789	exon1	c.C501G	p.G167G	AGGAGGCTACTCA	.	18.0	18.0	0.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
USP19	10869	hgsc.bcm.edu	hg19	3	49148785	49148785	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	USP19	NM_001199161	exon22	c.3232delT	p.Y1078fs	.	.	105.0	20.0	96.0	0.0	.	158	.	0.190476	0	none	.	.	PASS	Atlas-INDEL