Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm PLA2G2D 26279 hgsc.bcm.edu hg19 1 20440719 20440719 + Missense_Mutation SNP C C T novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . PLA2G2D NM_012400 exon4 c.G326A p.C109Y CAGGCACACAGCT . 61.0 15.0 76.0 0.0 . 7 . . . none . . PASS Atlas-SNP AGL 178 hgsc.bcm.edu hg19 1 100327977 100327977 + Nonsense_Mutation SNP C C G novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . AGL NM_000644 exon4 c.C458G p.S153X AAGAATCAGGTAA . 102.0 23.0 111.0 0.0 . 137 . . . none . . PASS Atlas-SNP NTRK1 4914 hgsc.bcm.edu hg19 1 156843561 156843561 + Silent SNP C C T novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . NTRK1 NM_001012331 exon8 c.C987T p.F329F CATCTTCACTGAG . 25.0 8.0 41.0 0.0 . 287 . . . none . . PASS Atlas-SNP GORAB 92344 hgsc.bcm.edu hg19 1 170501324 170501324 + Missense_Mutation SNP C C T novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . GORAB NM_152281 exon1 c.C35T p.A12V CGGCTGCGAGATT . 95.0 16.0 113.0 0.0 . 41 . . . none . . PASS Atlas-SNP RGS21 431704 hgsc.bcm.edu hg19 1 192321246 192321246 + Missense_Mutation SNP C C A novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . RGS21 NM_001039152 exon4 c.C158A p.A53D GGCTTGCCTGTGA . 51.0 11.0 57.0 0.0 . 32 . . . none . . PASS Atlas-SNP CDC73 79577 hgsc.bcm.edu hg19 1 193099338 193099338 + Missense_Mutation SNP G G A novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 CDC73,caecum,carcinoma,0,1 CDC73 NM_024529 exon3 c.G272A p.R91Q CTGATCGAAAAGA . 61.0 7.0 68.0 0.0 . 163 . . . none . . PASS Atlas-SNP SNRPE 6635 hgsc.bcm.edu hg19 1 203832834 203832834 + Missense_Mutation SNP G G A novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . SNRPE NM_003094 exon3 c.G125A p.R42Q ATATGCGGATAGA . 245.0 87.0 238.0 0.0 . 8 . . . none . . PASS Atlas-SNP LBR 3930 hgsc.bcm.edu hg19 1 225599084 225599084 + Missense_Mutation SNP A A T novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . LBR NM_194442 exon9 c.T1143A p.F381L GAGATCAAAAGTA . 153.0 28.0 147.0 0.0 . 54 . . . none . . PASS Atlas-SNP HYAL1 3373 hgsc.bcm.edu hg19 3 50340364 50340364 + Missense_Mutation SNP G G C rs370239620 alternate_allele TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . HYAL1 NM_033159 exon2 c.C24G p.I8M GGCGCAGATGGGA . 46.0 6.0 60.0 0.0 . 28 . . . alt . . PASS Atlas-SNP LMLN 89782 hgsc.bcm.edu hg19 3 197687277 197687277 + Missense_Mutation SNP C C A novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . LMLN NM_001136049 exon1 c.C185A p.P62H GTTCCCCTCCCTG . 133.0 6.0 172.0 0.0 . 53 . . . none . . PASS Atlas-SNP DCK 1633 hgsc.bcm.edu hg19 4 71892401 71892401 + Missense_Mutation SNP C C A novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . DCK NM_000788 exon6 c.C685A p.Q229K TATCTTCAAGAGG . 39.0 13.0 70.0 0.0 . 23 . . . none . . PASS Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126371574 126371574 + Missense_Mutation SNP G G A novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . FAT4 NM_024582 exon9 c.G9403A p.G3135S GAAGAAGGCATTT . 37.0 15.0 89.0 0.0 . 1752 . . . none . . PASS Atlas-SNP HIST1H4C 8364 hgsc.bcm.edu hg19 6 26104205 26104205 + Silent SNP C C G rs139978722 bycluster;byfrequency;alternate_allele TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . HIST1H4C NM_003542 exon1 c.C30G p.G10G AAAAGGCTTGGGG . 88.0 21.0 115.0 0.0 . 14 . . . alt C|0.999;T|0.001 . PASS Atlas-SNP ZKSCAN8 7745 hgsc.bcm.edu hg19 6 28116192 28116192 + Missense_Mutation SNP G G A novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . . NM_006298 exon2 c.G7A p.E3K ATGGCTGAAGAAT . 35.0 12.0 67.0 0.0 . . . . . none . . PASS Atlas-SNP CRISP3 10321 hgsc.bcm.edu hg19 6 49696475 49696475 + Missense_Mutation SNP C C T novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . CRISP3 NM_001190986 exon8 c.G775A p.A259T AGGAGGCCTTGCA . 120.0 38.0 150.0 0.0 . 67 . . . none . . PASS Atlas-SNP COL9A1 1297 hgsc.bcm.edu hg19 6 70990561 70990561 + Missense_Mutation SNP G G A novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . COL9A1 NM_001851 exon10 c.C929T p.P310L TTTCCCGGTTCAC . 28.0 9.0 33.0 0.0 . 228 . . . none . . PASS Atlas-SNP IMPG1 3617 hgsc.bcm.edu hg19 6 76660465 76660465 + Missense_Mutation SNP G G C novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . IMPG1 NM_001563 exon13 c.C1638G p.F546L CTCCAAGAAATGA . 63.0 15.0 87.0 0.0 . 143 . . . none . . PASS Atlas-SNP IMPG1 3617 hgsc.bcm.edu hg19 6 76660529 76660529 + Missense_Mutation SNP G G A novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . IMPG1 NM_001563 exon13 c.C1574T p.S525F GTGTCAGACAGAT . 40.0 9.0 54.0 0.0 . 143 . . . none . . PASS Atlas-SNP IMPG1 3617 hgsc.bcm.edu hg19 6 76660533 76660533 + Silent SNP G G A novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . IMPG1 NM_001563 exon13 c.C1570T p.L524L CAGACAGATCCAT . 39.0 10.0 52.0 0.0 . 143 . . . none . . PASS Atlas-SNP IMPG1 3617 hgsc.bcm.edu hg19 6 76660636 76660636 + Silent SNP G G A novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . IMPG1 NM_001563 exon13 c.C1467T p.I489I TTGGCTGATTGCA . 78.0 20.0 104.0 0.0 . 143 . . . none . . PASS Atlas-SNP LAMA4 3910 hgsc.bcm.edu hg19 6 112454683 112454683 + Silent SNP G G C novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . LAMA4 NM_001105206 exon27 c.C3564G p.L1188L TGCTCTGAGGGCC . 119.0 29.0 154.0 0.0 . 227 . . . none . . PASS Atlas-SNP MSRA 4482 hgsc.bcm.edu hg19 8 9912062 9912062 + Silent SNP C C T novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . MSRA NM_012331 exon1 c.C36T p.L12L GCTCCTCCTCCTC . 43.0 16.0 67.0 0.0 . 21 . . . none . . PASS Atlas-SNP MSRA 4482 hgsc.bcm.edu hg19 8 9912103 9912103 + Missense_Mutation SNP C C T novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . MSRA NM_012331 exon1 c.C77T p.S26L GCAACTCGGCCTC . 51.0 15.0 69.0 0.0 . 21 . . . none . . PASS Atlas-SNP ZNF189 7743 hgsc.bcm.edu hg19 9 104170234 104170234 + Missense_Mutation SNP G G C novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . ZNF189 NM_003452 exon3 c.G184C p.E62Q AAGGATGAGGAGC . 17.0 5.0 29.0 0.0 . 79 . . . none . . PASS Atlas-SNP OR10Q1 219960 hgsc.bcm.edu hg19 11 57996225 57996225 + Missense_Mutation SNP C C T novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . OR10Q1 NM_001004471 exon1 c.G123A p.M41I GAGGATCATCAAG . 106.0 28.0 129.0 0.0 . 79 . . . none . . PASS Atlas-SNP ZNF385A 25946 hgsc.bcm.edu hg19 12 54764720 54764720 + Silent SNP T T C novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . ZNF385A NM_001130967 exon6 c.A825G p.Q275Q TTTCAGTTGGACC . 122.0 34.0 217.0 0.0 . 45 . . . none . . PASS Atlas-SNP C12orf74 338809 hgsc.bcm.edu hg19 12 93100691 93100691 + Missense_Mutation SNP C C G novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . C12orf74 NM_001037671 exon2 c.C284G p.S95C AGGATTCTTCACA . 87.0 23.0 138.0 0.0 . 17 . . . none . . PASS Atlas-SNP COASY 80347 hgsc.bcm.edu hg19 17 40717244 40717244 + Splice_Site SNP G G T novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . COASY NM_001042529 exon7 c.1303-1G>T . TCCCCAGAAGCAG . 219.0 45.0 307.0 0.0 . 45 . . . none . . PASS Atlas-SNP AOC2 314 hgsc.bcm.edu hg19 17 40997487 40997487 + Missense_Mutation SNP G G C novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . AOC2 NM_009590 exon1 c.G844C p.V282L TTGGAAGTGGTTA . 102.0 23.0 116.0 0.0 . 61 . . . none . . PASS Atlas-SNP MAPT 4137 hgsc.bcm.edu hg19 17 44101444 44101444 + Silent SNP C C G novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . MAPT NM_001123066 exon15 c.C2238G p.V746V CAATGTCTCCTCC . 155.0 10.0 186.0 0.0 . 135 . . . none . . PASS Atlas-SNP NDC80 10403 hgsc.bcm.edu hg19 18 2616466 2616466 + Missense_Mutation SNP G G C novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . NDC80 NM_006101 exon17 c.G1822C p.D608H AAAGTTGATAGAG . 60.0 17.0 58.0 0.0 . 62 . . . none . . PASS Atlas-SNP NDC80 10403 hgsc.bcm.edu hg19 18 2616517 2616517 + Missense_Mutation SNP G G C novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . NDC80 NM_006101 exon17 c.G1873C p.E625Q ATTAAAGAGATTA . 37.0 10.0 38.0 0.0 . 62 . . . none . . PASS Atlas-SNP ZNF844 284391 hgsc.bcm.edu hg19 19 12187475 12187475 + Missense_Mutation SNP C C G novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 ZNF844,NS,carcinoma,0,6 ZNF844 NM_001136501 exon4 c.C1540G p.H514D CCTTCACATCTGC . 43.0 4.0 51.0 1.0 . 69 . . . none . . PASS Atlas-SNP FBXW9 84261 hgsc.bcm.edu hg19 19 12800616 12800616 + Missense_Mutation SNP G G A novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . FBXW9 NM_032301 exon7 c.C1105T p.H369Y AGACGTGCAGCAG . 98.0 22.0 180.0 0.0 . 30 . . . none . . PASS Atlas-SNP SIRPG 55423 hgsc.bcm.edu hg19 20 1615980 1615980 + Silent SNP C C A rs147655438 alternate_allele TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 SIRPG,NS,carcinoma,0,1 SIRPG NM_018556 exon4 c.G1014T p.A338A GCTGACCGCCAGC . 90.0 24.0 131.0 0.0 . 61 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP FTCD 10841 hgsc.bcm.edu hg19 21 47571511 47571511 + Silent SNP G G T novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . FTCD NM_206965 exon5 c.C597A p.I199I GAGCGCGATGCGG . 97.0 27.0 157.0 0.0 . 59 . . . none . . PASS Atlas-SNP MSN 4478 hgsc.bcm.edu hg19 X 64936758 64936758 + Missense_Mutation SNP G G C novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . MSN NM_002444 exon2 c.G91C p.D31H CTATTTGACCAGG . 77.0 13.0 105.0 0.0 . 89 . . . none . . PASS Atlas-SNP OGT 8473 hgsc.bcm.edu hg19 X 70782731 70782731 + Missense_Mutation SNP C C T novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . OGT NM_181672 exon16 c.C2012T p.A671V GTGGTGCGCTTTT . 132.0 31.0 123.0 0.0 . 207 . . . none . . PASS Atlas-SNP STAG2 10735 hgsc.bcm.edu hg19 X 123197834 123197834 + Nonsense_Mutation SNP C C A novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . STAG2 NM_001042749 exon20 c.C1958A p.S653X ATATTTCAAGAAG . 61.0 15.0 55.0 0.0 . 309 . . . none . . PASS Atlas-SNP LYPD3 27076 hgsc.bcm.edu hg19 19 43967294 43967300 + Frame_Shift_Del DEL GTTGCCG GTTGCCG - novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 GTTGCCG GTTGCCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . LYPD3 NM_014400 exon4 c.523_529del p.175_177del . . 98.0 20.0 171.0 0.0 . 24 . 0.204082 0 none . . PASS Atlas-INDEL RAB11FIP1 80223 hgsc.bcm.edu hg19 8 37730588 37730589 + Frame_Shift_Ins INS - - G novel TCGA-A4-7287-01A-11D-2136-08 TCGA-A4-7287-10A-01D-2136-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 11ea8c34-5b98-4a26-9312-6d92ea3eb990 93eabf7d-e975-4f03-a638-5bc360235ff1 . RAB11FIP1 NM_001002814 exon4 c.1732_1733insC p.S578fs . . 77.0 26.0 115.0 0.0 . 105 . 0.337662 0 none . . PASS Atlas-INDEL