Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TNFRSF14	8764	hgsc.bcm.edu	hg19	1	2491291	2491291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	TNFRSF14	NM_003820	exon4	c.T334C	p.S112P	AACTGCTCCAGGA	.	119.0	52.0	63.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
BAI2	576	hgsc.bcm.edu	hg19	1	32198684	32198684	+	Silent	SNP	G	G	A	rs140842802		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	BAI2	NM_001703	exon26	c.C3513T	p.A1171A	CAGGACGGCAGAC	.	146.0	12.0	101.0	0.0	.	128	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
THRAP3	9967	hgsc.bcm.edu	hg19	1	36751972	36751972	+	Silent	SNP	T	T	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	THRAP3	NM_005119	exon4	c.T141G	p.S47S	CAGTTCTAGGTCT	.	62.0	26.0	55.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
MTF1	4520	hgsc.bcm.edu	hg19	1	38288019	38288019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	MTF1	NM_005955	exon9	c.C1541T	p.S514L	ACAGCTGATGCCA	.	104.0	49.0	85.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	hg19	1	155451901	155451901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	ASH1L,NS,carcinoma,0,1	ASH1L	NM_018489	exon3	c.A760G	p.I254V	TCCTGATCAAATC	.	121.0	43.0	74.0	0.0	.	279	.	.	.	none	.	.	PASS	Atlas-SNP
IARS2	55699	hgsc.bcm.edu	hg19	1	220267813	220267813	+	Silent	SNP	G	G	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	IARS2	NM_018060	exon1	c.G255T	p.L85L	GGAGCTGGAGATC	.	59.0	21.0	44.0	0.0	.	106	.	.	.	none	.	.	PASS	Atlas-SNP
CAD	790	hgsc.bcm.edu	hg19	2	27463149	27463149	+	Missense_Mutation	SNP	G	G	T	rs199572743	alternate_allele	TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	CAD	NM_004341	exon35	c.G5513T	p.R1838L	GACCCCGCCGTGG	.	86.0	33.0	66.0	0.0	.	199	.	.	.	alt	.	.	PASS	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	hg19	2	160289719	160289719	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	BAZ2B	NM_013450	exon9	c.C1449G	p.F483L	TGTCAAGAATGGA	.	88.0	43.0	83.0	0.0	.	196	.	.	.	none	.	.	PASS	Atlas-SNP
LY75-CD302	100526664	hgsc.bcm.edu	hg19	2	160634461	160634461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	.	NM_001198759	exon38	c.A5407G	p.K1803E	AATATTTCCTTTT	.	481.0	199.0	401.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ITGAV	3685	hgsc.bcm.edu	hg19	2	187466865	187466865	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	ITGAV	NM_001145000	exon2	c.A303C	p.E101D	AATTGAATTTGAT	.	69.0	21.0	44.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
SF3B1	23451	hgsc.bcm.edu	hg19	2	198270054	198270054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	SF3B1	NM_012433	exon10	c.C1382A	p.S461Y	TTTCCAGATGGCT	.	222.0	100.0	173.0	0.0	.	1038	.	.	.	none	.	.	PASS	Atlas-SNP
AGFG1	3267	hgsc.bcm.edu	hg19	2	228356286	228356286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	AGFG1	NM_004504	exon2	c.G191T	p.R64M	CACACAGGGTGAA	.	528.0	223.0	416.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
IP6K2	51447	hgsc.bcm.edu	hg19	3	48727116	48727116	+	Missense_Mutation	SNP	C	C	T	rs372776558	alternate_allele	TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	IP6K2	NM_016291	exon5	c.G635A	p.R212H	TCGTAGCGGGAAG	.	91.0	26.0	48.0	0.0	.	63	.	.	.	alt	.	.	PASS	Atlas-SNP
DOCK3	1795	hgsc.bcm.edu	hg19	3	51251577	51251577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	DOCK3	NM_004947	exon14	c.T1151C	p.L384P	AGCTTCTTCGTGG	.	142.0	6.0	68.0	0.0	.	397	.	.	.	none	.	.	PASS	Atlas-SNP
EFCC1	79825	hgsc.bcm.edu	hg19	3	128720759	128720759	+	Silent	SNP	C	C	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	.	NM_024768	exon1	c.C288A	p.A96A	CACGGCCGGGCAG	.	170.0	47.0	63.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	hg19	3	151163860	151163860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	IGSF10	NM_178822	exon4	c.C3909A	p.S1303R	GTCTTTGCTTATA	.	121.0	5.0	87.0	0.0	.	279	.	.	.	none	.	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195511828	195511828	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	MUC4	NM_018406	exon2	c.C6623G	p.P2208R	GGAAGAGGGGTGG	.	260.0	15.0	127.0	0.0	.	1505	.	.	.	none	.	.	PASS	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48581047	48581047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	FRYL	NM_015030	exon23	c.A2471G	p.Y824C	CAAGCATAGCTCA	.	129.0	54.0	80.0	0.0	.	242	.	.	.	none	.	.	PASS	Atlas-SNP
FIP1L1	81608	hgsc.bcm.edu	hg19	4	54248495	54248495	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	FIP1L1	NM_030917	exon4	c.C221G	p.P74R	GTGTACCAAAACC	.	86.0	29.0	63.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
PRDM5	11107	hgsc.bcm.edu	hg19	4	121828665	121828665	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	PRDM5	NM_018699	exon2	c.C141T	p.D47D	ATCCAAGTCTTCA	.	162.0	74.0	159.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
TRPC3	7222	hgsc.bcm.edu	hg19	4	122825529	122825529	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	TRPC3	NM_001130698	exon8	c.T2201A	p.V734D	AGTAAAACGACCA	.	218.0	64.0	183.0	0.0	.	201	.	.	.	none	.	.	PASS	Atlas-SNP
TRPC3	7222	hgsc.bcm.edu	hg19	4	122825544	122825544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	TRPC3	NM_001130698	exon8	c.T2186A	p.V729E	ATAGTTACATTGT	.	217.0	68.0	200.0	0.0	.	201	.	.	.	none	.	.	PASS	Atlas-SNP
FAM198B	51313	hgsc.bcm.edu	hg19	4	159092466	159092466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	FAM198B	NM_016613	exon2	c.C62T	p.P21L	ACCCGCGGGACGC	.	52.0	23.0	61.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
FAM81B	153643	hgsc.bcm.edu	hg19	5	94783981	94783981	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	FAM81B	NM_152548	exon9	c.T1038C	p.S346S	AAAGTCTGAAAAT	.	386.0	167.0	309.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
GRAMD3	65983	hgsc.bcm.edu	hg19	5	125808993	125808993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	GRAMD3	NM_001146319	exon5	c.A464G	p.Q155R	TATACCAAGGAAA	.	216.0	90.0	173.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF184	7738	hgsc.bcm.edu	hg19	6	27420389	27420389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	ZNF184	NM_007149	exon6	c.C949A	p.Q317K	TCCTCTGACTAAA	.	63.0	22.0	55.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
HLA-C	3107	hgsc.bcm.edu	hg19	6	31239839	31239839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	HLA-C	NM_002117	exon1	c.A10G	p.M4V	GCGCCATGACCCG	.	84.0	30.0	69.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
KLC4	89953	hgsc.bcm.edu	hg19	6	43039962	43039962	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	KLC4	NM_201523	exon12	c.T1511A	p.L504Q	AGACCCTGGAGGA	.	53.0	22.0	38.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	hg19	6	72892828	72892828	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	RIMS1	NM_014989	exon6	c.G1654C	p.E552Q	GAGCTGGAGAGCG	.	87.0	29.0	80.0	0.0	.	278	.	.	.	none	.	.	PASS	Atlas-SNP
POU3F2	5454	hgsc.bcm.edu	hg19	6	99283832	99283832	+	Silent	SNP	C	C	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	POU3F2	NM_005604	exon1	c.C1083A	p.I361I	CTCCATCGAGGTG	.	96.0	30.0	70.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152470766	152470766	+	Missense_Mutation	SNP	A	A	C	rs139643725	bycluster;alternate_allele	TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	SYNE1	NM_182961	exon136	c.T24488G	p.I8163S	TGCTCAATCTTAT	.	38.0	16.0	25.0	0.0	.	3227	.	.	.	alt	A|1.000;G|0.000	.	PASS	Atlas-SNP
TBP	6908	hgsc.bcm.edu	hg19	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	29.0	5.0	50.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
DDC	1644	hgsc.bcm.edu	hg19	7	50544331	50544331	+	Silent	SNP	A	A	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	DDC	NM_001082971	exon11	c.T1032C	p.T344T	GTAGTCAGTGATA	.	35.0	18.0	25.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF394	84124	hgsc.bcm.edu	hg19	7	99092213	99092213	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	ZNF394	NM_032164	exon3	c.C625T	p.Q209X	TTTGTTGCATTGG	.	23.0	14.0	26.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
ZC3HAV1	56829	hgsc.bcm.edu	hg19	7	138738235	138738235	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	ZC3HAV1	NM_020119	exon12	c.G2411C	p.S804T	AGGAAACTGTCAA	.	102.0	47.0	56.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
HIPK2	28996	hgsc.bcm.edu	hg19	7	139316430	139316430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	HIPK2	NM_022740	exon3	c.T1145C	p.I382T	ATGTCAATTGCCT	.	95.0	55.0	53.0	0.0	.	192	.	.	.	none	.	.	PASS	Atlas-SNP
EPHB6	2051	hgsc.bcm.edu	hg19	7	142562074	142562074	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	EPHB6	NM_004445	exon7	c.C516T	p.S172S	CTCCTCCTCTTCT	.	87.0	4.0	52.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
RGS3	5998	hgsc.bcm.edu	hg19	9	116276826	116276826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	RGS3	NM_144488	exon16	c.C1566A	p.H522Q	GGGCCACGGGAAC	.	97.0	38.0	68.0	0.0	.	251	.	.	.	none	.	.	PASS	Atlas-SNP
PAPPA	5069	hgsc.bcm.edu	hg19	9	118969802	118969802	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	PAPPA	NM_002581	exon3	c.T1546A	p.F516I	AATATTTTCTTTG	.	56.0	27.0	40.0	0.0	.	243	.	.	.	none	.	.	PASS	Atlas-SNP
GLT6D1	360203	hgsc.bcm.edu	hg19	9	138516059	138516059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	GLT6D1	NM_182974	exon5	c.A715G	p.I239V	CTAAAATATTATG	.	64.0	25.0	56.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
TET1	80312	hgsc.bcm.edu	hg19	10	70404540	70404540	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	TET1	NM_030625	exon4	c.T2054A	p.L685X	AAAAATTGGAATT	.	260.0	104.0	229.0	0.0	.	255	.	.	.	none	.	.	PASS	Atlas-SNP
CTR9	9646	hgsc.bcm.edu	hg19	11	10789494	10789494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	CTR9	NM_014633	exon14	c.G1828A	p.V610M	GGCAACGTGTGGC	.	105.0	32.0	77.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
EHBP1L1	254102	hgsc.bcm.edu	hg19	11	65349066	65349066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	EHBP1L1	NM_001099409	exon9	c.A923G	p.K308R	TCCGGAAAGGCTC	.	89.0	41.0	62.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
BIRC2	329	hgsc.bcm.edu	hg19	11	102221170	102221170	+	Silent	SNP	A	A	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	BIRC2	NM_001256163	exon2	c.A585G	p.P195P	GTGGCCATTAACT	.	54.0	18.0	55.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
SLC4A8	9498	hgsc.bcm.edu	hg19	12	51844689	51844689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	SLC4A8	NM_001039960	exon3	c.A160G	p.M54V	GTTCGGATGCCGC	.	158.0	67.0	124.0	0.0	.	292	.	.	.	none	.	.	PASS	Atlas-SNP
ANKLE2	23141	hgsc.bcm.edu	hg19	12	133331516	133331516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	ANKLE2	NM_015114	exon2	c.G385A	p.A129T	TGAGAGCTGTGAC	.	98.0	35.0	64.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
USP12	219333	hgsc.bcm.edu	hg19	13	27669947	27669947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	USP12	NM_182488	exon4	c.C364A	p.Q122K	CTTGTTGCATGTA	.	51.0	12.0	51.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
FLRT2	23768	hgsc.bcm.edu	hg19	14	86088353	86088353	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	FLRT2	NM_013231	exon2	c.T495C	p.F165F	GTTGTTTTTGTCT	.	62.0	20.0	44.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
WDR25	79446	hgsc.bcm.edu	hg19	14	100996202	100996202	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	WDR25	NM_001161476	exon7	c.T1459A	p.L487M	GGTGACTTGCTGG	.	53.0	19.0	36.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
CYFIP1	23191	hgsc.bcm.edu	hg19	15	22991163	22991163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	CYFIP1	NM_014608	exon25	c.C2852T	p.T951M	TGAAGACGCTGAT	.	24.0	13.0	11.0	0.0	.	159	.	.	.	none	.	.	PASS	Atlas-SNP
PARN	5073	hgsc.bcm.edu	hg19	16	14704668	14704668	+	Splice_Site	SNP	T	T	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	PARN	NM_001242992	exon7	c.251-2A>C	.	AATTCCTAAACAC	.	62.0	21.0	32.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
ACSM1	116285	hgsc.bcm.edu	hg19	16	20651870	20651870	+	Silent	SNP	G	G	A	rs377637288		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	ACSM1,caecum,carcinoma,0,1	ACSM1	NM_052956	exon7	c.C1029T	p.G343G	CTCCCCGCCAGTA	.	119.0	69.0	70.0	0.0	.	118	.	.	.	weak	.	.	PASS	Atlas-SNP
TAT	6898	hgsc.bcm.edu	hg19	16	71607494	71607494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	TAT	NM_000353	exon4	c.G356A	p.R119Q	TCCTCCCGACTGG	.	95.0	32.0	59.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
ZCCHC14	23174	hgsc.bcm.edu	hg19	16	87445572	87445572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	ZCCHC14	NM_015144	exon12	c.C2344T	p.P782S	CTGGCGGGGGTGG	.	64.0	39.0	35.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
SLC25A11	8402	hgsc.bcm.edu	hg19	17	4841167	4841167	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	SLC25A11	NM_003562	exon8	c.T814A	p.Y272N	CCTCGTAGCGGAC	.	92.0	23.0	37.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC144A	9720	hgsc.bcm.edu	hg19	17	16667486	16667486	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	CCDC144A	NM_014695	exon15	c.G4095A	p.L1365L	CTTGTTGAAGGTT	.	179.0	37.0	116.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC144A	9720	hgsc.bcm.edu	hg19	17	16667487	16667487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	CCDC144A	NM_014695	exon15	c.A4096G	p.K1366E	TTGTTGAAGGTTA	.	173.0	36.0	113.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF207	7756	hgsc.bcm.edu	hg19	17	30696690	30696690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	ZNF207,NS,malignant_melanoma,0,1	ZNF207	NM_001098507	exon12	c.C1397T	p.P466L	AGGGACCGCCAAT	.	67.0	18.0	41.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
PSMD11	5717	hgsc.bcm.edu	hg19	17	30806379	30806379	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	PSMD11	NM_002815	exon10	c.T1023C	p.P341P	TGAGCCTTTTTCC	.	75.0	4.0	57.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
RSAD1	55316	hgsc.bcm.edu	hg19	17	48557272	48557272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	RSAD1	NM_018346	exon3	c.C301A	p.P101T	GGGACCCCCAGTC	.	118.0	68.0	57.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
AXIN2	8313	hgsc.bcm.edu	hg19	17	63533850	63533850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	AXIN2,colon,carcinoma,0,1	AXIN2	NM_004655	exon6	c.C1304A	p.P435Q	GTCTGCGGGTCTT	.	42.0	2.0	22.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	hg19	18	72776216	72776216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	ZNF407	NM_017757	exon8	c.A6539G	p.Q2180R	GGGTGCAGGACGA	.	35.0	16.0	29.0	0.0	.	231	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	hg19	18	72776240	72776240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	ZNF407	NM_017757	exon8	c.A6563G	p.H2188R	ACTCCCACACCGT	.	34.0	13.0	29.0	0.0	.	231	.	.	.	none	.	.	PASS	Atlas-SNP
SAFB2	9667	hgsc.bcm.edu	hg19	19	5587272	5587272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	SAFB2	NM_014649	exon21	c.C2844A	p.H948Q	GGTGAAGTGGGGG	.	114.0	46.0	95.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF709	163051	hgsc.bcm.edu	hg19	19	12575957	12575957	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	ZNF709	NM_152601	exon4	c.C779G	p.A260G	CTGAAAGCTTTTC	.	63.0	23.0	72.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
ERF	2077	hgsc.bcm.edu	hg19	19	42754700	42754700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	ERF	NM_006494	exon2	c.T40C	p.W14R	AGGCCCAATCCGG	.	94.0	35.0	65.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF221	7638	hgsc.bcm.edu	hg19	19	44466901	44466901	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	ZNF221	NM_013359	exon3	c.T23G	p.L8R	TTGAACTGCTTCA	.	62.0	19.0	40.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
GLTSCR2	29997	hgsc.bcm.edu	hg19	19	48248919	48248919	+	Silent	SNP	A	A	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	GLTSCR2	NM_015710	exon1	c.A103C	p.R35R	GCGCTGAGGCGGC	.	172.0	70.0	103.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
CNOT3	4849	hgsc.bcm.edu	hg19	19	54652449	54652449	+	Silent	SNP	C	C	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	CNOT3	NM_014516	exon12	c.C1377G	p.S459S	CCCTTCCGGCCCC	.	155.0	61.0	107.0	0.0	.	133	.	.	.	none	.	.	PASS	Atlas-SNP
TTYH1	57348	hgsc.bcm.edu	hg19	19	54930303	54930303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	TTYH1	NM_020659	exon2	c.C128A	p.A43D	CCCAGGCCTTGTT	.	56.0	19.0	35.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
GZF1	64412	hgsc.bcm.edu	hg19	20	23345062	23345062	+	Silent	SNP	A	A	C	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	GZF1	NM_022482	exon1	c.A42C	p.P14P	CTCCCCATTTAAC	.	40.0	29.0	33.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
ZGPAT	84619	hgsc.bcm.edu	hg19	20	62365029	62365029	+	Missense_Mutation	SNP	G	G	A	rs376773744		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	ZGPAT	NM_032527	exon4	c.G809A	p.R270H	CACTGCGCACAGA	.	73.0	48.0	40.0	0.0	.	57	.	.	.	weak	.	.	PASS	Atlas-SNP
ADARB1	104	hgsc.bcm.edu	hg19	21	46603314	46603314	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	ADARB1	NM_001160230	exon7	c.T1285G	p.S429A	CAGAAATCAGAGC	.	43.0	19.0	51.0	0.0	.	81	.	.	.	none	.	.	PASS	Atlas-SNP
CDKN2AIP	55602	hgsc.bcm.edu	hg19	4	184366090	184366090	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	CDKN2AIP	NM_017632	exon1	c.139delG	p.A47fs	.	.	150.0	60.0	83.0	0.0	.	31	.	0.4	0	none	.	.	PASS	Atlas-Indel,Pindel
ABHD16B	140701	hgsc.bcm.edu	hg19	20	62494129	62494129	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	ABHD16B	NM_080622	exon1	c.1235delA	p.E412fs	.	.	39.0	17.0	26.0	0.0	.	22	.	0.435897	0	none	.	.	PASS	Atlas-Indel,Pindel
WDR18	57418	hgsc.bcm.edu	hg19	19	994054	994056	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	WDR18	NM_024100	exon9	c.1133_1135del	p.378_379del	.	.	53.0	24.0	60.0	0.0	.	20	.	0.45283	0	none	.	.	PASS	Atlas-Indel,Pindel
DENND5A	23258	hgsc.bcm.edu	hg19	11	9165682	9165682	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	DENND5A	NM_001243254	exon19	c.3267delC	p.I1089fs	.	.	41.0	17.0	22.0	0.0	.	84	.	0.414634	0	none	.	.	PASS	Atlas-Indel,Pindel
TAS1R3	83756	hgsc.bcm.edu	hg19	1	1268443	1268443	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	TAS1R3	NM_152228	exon4	c.1417delA	p.R473fs	.	.	97.0	40.0	85.0	0.0	.	39	.	0.412371	0	none	.	.	PASS	Atlas-Indel,Pindel
HELZ2	85441	hgsc.bcm.edu	hg19	20	62200744	62200744	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	.	NM_001037335	exon5	c.846delT	p.N282fs	.	.	80.0	44.0	51.0	0.0	.	.	.	0.55	0	none	.	.	PASS	Atlas-Indel,Pindel
RREB1	6239	hgsc.bcm.edu	hg19	6	7249194	7249198	+	Frame_Shift_Del	DEL	TGGAG	TGGAG	-	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	TGGAG	TGGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	RREB1	NM_001003699	exon13	c.5221_5225del	p.1741_1742del	.	.	30.0	10.0	22.0	0.0	.	242	.	0.333333	0	none	.	.	PASS	Atlas-Indel,Pindel
LRRC36	55282	hgsc.bcm.edu	hg19	16	67405136	67405137	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	LRRC36	NM_018296	exon9	c.1484_1485del	p.495_495del	.	.	113.0	37.0	51.0	0.0	.	68	.	0.327434	0	none	.	.	PASS	Atlas-Indel,Pindel
ABCB11	8647	hgsc.bcm.edu	hg19	2	169787177	169787177	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-5P-A9K2-01A-11D-A42J-10	TCGA-5P-A9K2-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	13f52db0-17b0-499c-ab9f-dd9c49a5ee2d	59a2e838-4559-4580-8f5f-07db42390e4d	.	ABCB11	NM_003742	exon25	c.3410delT	p.V1137fs	.	.	64.0	18.0	49.0	0.0	.	136	.	0.28125	0	none	.	.	PASS	Atlas-Indel,Pindel