Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TMEM52	339456	hgsc.bcm.edu	hg19	1	1850654	1850654	+	Silent	SNP	G	G	C	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	TMEM52,NS,carcinoma,0,1	TMEM52	NM_178545	exon1	c.C51G	p.L17L	CGGCAGGAGCGGC	.	10.0	2.0	9.0	1.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
PTCH2	8643	hgsc.bcm.edu	hg19	1	45295617	45295617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	PTCH2	NM_001166292	exon7	c.G899A	p.G300E	ATGCCTCCCAGCA	.	95.0	42.0	102.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
C8A	731	hgsc.bcm.edu	hg19	1	57372456	57372456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	C8A	NM_000562	exon8	c.G1213A	p.G405S	GGAGGTGGCAAAA	.	139.0	56.0	153.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152084174	152084174	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	TCHH	NM_007113	exon3	c.C1519G	p.L507V	GCCTTAGTTGCTG	.	37.0	6.0	30.0	0.0	.	275	.	.	.	none	.	.	PASS	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152084221	152084221	+	Missense_Mutation	SNP	A	A	C	rs202112040		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	TCHH	NM_007113	exon3	c.T1472G	p.L491R	TCCTCGAGCTTCA	.	42.0	8.0	22.0	0.0	.	275	.	.	.	weak	.	.	PASS	Atlas-SNP
SEMA4A	64218	hgsc.bcm.edu	hg19	1	156130786	156130786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	SEMA4A	NM_001193300	exon8	c.G776C	p.R259T	TTGAGAGGCTCCA	.	57.0	17.0	37.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
CNTN2	6900	hgsc.bcm.edu	hg19	1	205033767	205033767	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	CNTN2	NM_005076	exon12	c.G1408C	p.D470H	ACTCCAGATGGCA	.	114.0	44.0	95.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
CEP68	23177	hgsc.bcm.edu	hg19	2	65299543	65299543	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	CEP68	NM_015147	exon3	c.T1313G	p.L438R	CCCAGCTAAGGAC	.	70.0	29.0	61.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220342166	220342166	+	Silent	SNP	A	A	G	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	SPEG	NM_005876	exon20	c.A4728G	p.S1576S	GCATTCAGGTAGG	.	65.0	24.0	78.0	0.0	.	272	.	.	.	none	.	.	PASS	Atlas-SNP
TRMT44	152992	hgsc.bcm.edu	hg19	4	8470057	8470057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	TRMT44	NM_152544	exon9	c.G1911T	p.K637N	TTTGAAGACCTGG	.	101.0	41.0	79.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
CC2D2A	57545	hgsc.bcm.edu	hg19	4	15539635	15539635	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	CC2D2A	NM_001080522	exon17	c.T1878C	p.D626D	CACTGATCGGGCA	.	143.0	49.0	165.0	0.0	.	158	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJC21	134218	hgsc.bcm.edu	hg19	5	34945005	34945005	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	DNAJC21	NM_001012339	exon8	c.G1017A	p.R339R	GCATCGGGAAATG	.	564.0	206.0	603.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
C6orf52	347744	hgsc.bcm.edu	hg19	6	10687259	10687259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	C6orf52	NM_001145020	exon3	c.G210T	p.K70N	ACAGTCCTTTCCA	.	107.0	8.0	158.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
CAPN11	11131	hgsc.bcm.edu	hg19	6	44137019	44137019	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	CAPN11	NM_007058	exon3	c.G90A	p.E30E	AGCAGAGCCCACT	.	200.0	75.0	194.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
EGFR	1956	hgsc.bcm.edu	hg19	7	55221781	55221781	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	EGFR	NM_201283	exon7	c.C825T	p.Y275Y	CACGTACCAGATG	.	327.0	94.0	118.0	0.0	.	20426	.	.	.	none	.	.	PASS	Atlas-SNP
DLX6	1750	hgsc.bcm.edu	hg19	7	96635450	96635450	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	DLX6	NM_005222	exon1	c.A161C	p.Q54P	CGCCGCAGCCGCA	.	89.0	5.0	45.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
CDHR3	222256	hgsc.bcm.edu	hg19	7	105624700	105624700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	CDHR3	NM_152750	exon4	c.G478A	p.D160N	GCCTTCGATCCAG	.	293.0	40.0	118.0	0.0	.	153	.	.	.	none	.	.	PASS	Atlas-SNP
C7orf33	202865	hgsc.bcm.edu	hg19	7	148311173	148311173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	C7orf33	NM_145304	exon2	c.T244C	p.F82L	ATGGAATTTATTG	.	113.0	74.0	42.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJB6	10049	hgsc.bcm.edu	hg19	7	157160104	157160104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	DNAJB6	NM_058246	exon5	c.C273A	p.F91L	TGGCTTCACATTC	.	101.0	6.0	91.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
MTSS1	9788	hgsc.bcm.edu	hg19	8	125580765	125580765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	MTSS1	NM_014751	exon7	c.T473C	p.I158T	GGCTGGATATCAC	.	88.0	7.0	75.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
MFSD3	113655	hgsc.bcm.edu	hg19	8	145736222	145736222	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	MFSD3	NM_138431	exon4	c.T1001A	p.L334Q	GAGGCCTGGTCAC	.	22.0	9.0	35.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
DPP7	29952	hgsc.bcm.edu	hg19	9	140006480	140006480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	DPP7	NM_013379	exon10	c.C1052A	p.A351D	GTGCAGGCCTGCA	.	96.0	38.0	118.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
DPP7	29952	hgsc.bcm.edu	hg19	9	140006481	140006481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	DPP7	NM_013379	exon10	c.G1051T	p.A351S	TGCAGGCCTGCAG	.	97.0	38.0	119.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
ITGB1	3688	hgsc.bcm.edu	hg19	10	33199326	33199326	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	ITGB1	NM_002211	exon14	c.G1989A	p.Q663Q	ACATTCCTGTGTG	.	549.0	211.0	497.0	0.0	.	156	.	.	.	none	.	.	PASS	Atlas-SNP
FAM175B	23172	hgsc.bcm.edu	hg19	10	126515171	126515171	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	FAM175B	NM_032182	exon5	c.T275G	p.I92S	AAGTCATTGGGTG	.	80.0	20.0	98.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
PCF11	51585	hgsc.bcm.edu	hg19	11	82877690	82877690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	PCF11_ENST00000298281,NS,carcinoma,0,4	PCF11	NM_015885	exon5	c.A1751G	p.N584S	AGGAGAATGTAGA	.	312.0	126.0	339.0	1.0	.	220	.	.	.	none	.	.	PASS	Atlas-SNP
SORL1	6653	hgsc.bcm.edu	hg19	11	121498410	121498410	+	Missense_Mutation	SNP	G	G	A	rs146742626		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	SORL1	NM_003105	exon47	c.G6511A	p.A2171T	TTCACCGCCTTCG	.	80.0	34.0	63.0	0.0	.	218	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
OR10G7	390265	hgsc.bcm.edu	hg19	11	123909026	123909026	+	Missense_Mutation	SNP	C	C	T	rs78197836		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	OR10G7	NM_001004463	exon1	c.G683A	p.R228H	GAGGTGCGGATCC	.	192.0	15.0	173.0	0.0	.	103	.	.	.	weak	.	.	PASS	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	hg19	12	53069229	53069229	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	KRT1	NM_006121	exon9	c.C1683T	p.S561S	ACCTCCGGAGCCG	.	41.0	6.0	21.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
KRT3	3850	hgsc.bcm.edu	hg19	12	53183951	53183951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	KRT3,rectum,carcinoma,0,2	KRT3	NM_057088	exon9	c.G1762A	p.G588S	CAAAGCCGCTGCC	.	105.0	19.0	86.0	1.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
KRT3	3850	hgsc.bcm.edu	hg19	12	53183979	53183979	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	KRT3	NM_057088	exon9	c.C1734T	p.G578G	GCTGCCGCCGCCA	.	124.0	9.0	98.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
UHRF1BP1L	23074	hgsc.bcm.edu	hg19	12	100453755	100453755	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	UHRF1BP1L	NM_015054	exon13	c.T1616C	p.L539P	AACCATAGAATGC	.	150.0	53.0	146.0	0.0	.	144	.	.	.	none	.	.	PASS	Atlas-SNP
MTUS2	23281	hgsc.bcm.edu	hg19	13	29674966	29674966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	MTUS2	NM_001033602	exon3	c.G2533T	p.G845C	AAATCTGGTCTCC	.	232.0	71.0	219.0	0.0	.	279	.	.	.	none	.	.	PASS	Atlas-SNP
MTUS2	23281	hgsc.bcm.edu	hg19	13	29674967	29674967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	MTUS2	NM_001033602	exon3	c.G2534T	p.G845V	AATCTGGTCTCCG	.	233.0	72.0	221.0	0.0	.	279	.	.	.	none	.	.	PASS	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23886164	23886164	+	Missense_Mutation	SNP	G	G	T	rs150552664	alternate_allele	TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	MYH7,NS,carcinoma,0,1	MYH7	NM_000257	exon33	c.C4557A	p.S1519R	CTTTCCGCTGGAA	.	60.0	3.0	63.0	0.0	.	349	.	.	.	alt	G|1.000;A|0.000	.	PASS	Atlas-SNP
PPP1R13B	23368	hgsc.bcm.edu	hg19	14	104219447	104219447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	PPP1R13B	NM_015316	exon7	c.C718A	p.Q240K	ATTGCTGACTAAG	.	93.0	30.0	119.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28377879	28377879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	HERC2	NM_004667	exon80	c.G12328A	p.G4110R	GGTCCCCGGCTGC	.	215.0	77.0	181.0	0.0	.	501	.	.	.	none	.	.	PASS	Atlas-SNP
CAPN3	825	hgsc.bcm.edu	hg19	15	42678446	42678446	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	CAPN3	NM_000070	exon3	c.G461C	p.S154T	ATCAAAGTTTCAT	.	95.0	43.0	110.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
MAP1A	4130	hgsc.bcm.edu	hg19	15	43816966	43816966	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	MAP1A,caecum,carcinoma,0,1	MAP1A	NM_002373	exon4	c.G3295C	p.V1099L	GCAATAGTCTTTG	.	113.0	38.0	99.0	0.0	.	189	.	.	.	none	.	.	PASS	Atlas-SNP
TM4SF5	9032	hgsc.bcm.edu	hg19	17	4686223	4686223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	TM4SF5	NM_003963	exon4	c.C470T	p.T157M	ATGTGACGCTCTT	.	148.0	83.0	97.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
PFAS	5198	hgsc.bcm.edu	hg19	17	8170960	8170960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	PFAS	NM_012393	exon26	c.C3359A	p.A1120E	GCTATGCAGATGT	.	114.0	33.0	94.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
PGS1	9489	hgsc.bcm.edu	hg19	17	76411070	76411070	+	Missense_Mutation	SNP	G	G	T	rs372229822	alternate_allele	TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	PGS1	NM_024419	exon8	c.G1513T	p.V505L	GCGATCGTGACGG	.	87.0	23.0	97.0	0.0	.	30	.	.	.	alt	.	.	PASS	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	hg19	19	11558373	11558373	+	Silent	SNP	A	A	G	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	PRKCSH,colon,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.A969G	p.E323E	GGAGGAAGAAGAG	.	106.0	7.0	93.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
RNASEH2A	10535	hgsc.bcm.edu	hg19	19	12921202	12921202	+	Silent	SNP	C	C	A	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	RNASEH2A	NM_006397	exon6	c.C621A	p.G207G	TTATGGCTCAGGC	.	121.0	49.0	96.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRH	5794	hgsc.bcm.edu	hg19	19	55710166	55710166	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	PTPRH	NM_002842	exon8	c.G1535A	p.W512X	CTGACCCATGAGA	.	55.0	23.0	40.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765152	66765152	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	AR	NM_000044	exon1	c.T164A	p.L55Q	GTTTGCTGCTGCT	.	249.0	13.0	244.0	0.0	.	249	.	.	.	none	.	.	PASS	Atlas-SNP
GPR50	9248	hgsc.bcm.edu	hg19	X	150349201	150349201	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	GPR50	NM_004224	exon2	c.C1146T	p.A382A	CCGTGCCTCTGGC	.	85.0	29.0	109.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
COX3	5742	hgsc.bcm.edu	hg19	MT	9247	9247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	.	ENST00000362079	exon1	c.G41A	p.S14N	AACCCAGCCCATG	.	85.0	79.0	27.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
OR2A1	346528	hgsc.bcm.edu	hg19	7	144015742	144015744	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	OR2A1	NM_001005287	exon1	c.524_526del	p.175_176del	.	.	594.0	68.0	400.0	0.0	.	10	.	0.114478	0	none	.	.	PASS	Atlas-INDEL
OR2A1	346528	hgsc.bcm.edu	hg19	7	143929405	143929407	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	OR2A1	NM_001005287	exon1	c.531_533del	p.177_178del	.	.	503.0	44.0	361.0	0.0	.	10	.	0.0874752	0	none	.	.	PASS	Atlas-INDEL
FAM71F1	84691	hgsc.bcm.edu	hg19	7	128363339	128363339	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	FAM71F1	NM_032599	exon4	c.775delA	p.I259fs	.	.	96.0	33.0	131.0	0.0	.	42	.	0.34375	0	none	.	.	PASS	Atlas-Indel,Pindel
ATG2A	23130	hgsc.bcm.edu	hg19	11	64677319	64677320	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	ATG2A	NM_015104	exon14	c.1941_1942insTT	p.F647fs	.	.	96.0	37.0	74.0	0.0	.	133	.	0.385417	0	none	.	.	PASS	Atlas-Indel,Pindel
SMAP1	60682	hgsc.bcm.edu	hg19	6	71567632	71567633	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	SMAP1	NM_001044305	exon10	c.968_969del	p.323_323del	.	.	60.0	23.0	64.0	0.0	.	77	.	0.383333	0	none	.	.	PASS	Atlas-Indel,Pindel
SF3A1	10291	hgsc.bcm.edu	hg19	22	30731504	30731513	+	Frame_Shift_Del	DEL	AATCTTCACC	AATCTTCACC	-	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	AATCTTCACC	AATCTTCACC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	SF3A1	NM_005877	exon15	c.2224_2233del	p.742_745del	.	.	103.0	29.0	105.0	0.0	.	61	.	0.281553	0	none	.	.	PASS	Atlas-Indel,Pindel
ANKRD20A3	441425	hgsc.bcm.edu	hg19	9	42368494	42368500	+	Frame_Shift_Del	DEL	ACCGAAT	ACCGAAT	-	novel		TCGA-5P-A9JZ-01A-11D-A42J-10	TCGA-5P-A9JZ-10A-01D-A42M-10	ACCGAAT	ACCGAAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52e2c3e0-b7fa-491c-b9ab-525d210a1837	b000234d-c290-4ae5-9ce1-305e268770ab	.	.	NM_001012419	exon1	c.79_85del	p.27_29del	.	.	253.0	28.0	223.0	0.0	.	.	.	0.111	.	none	.	.	PASS	Pindel