Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm PADI6 353238 hgsc.bcm.edu hg19 1 17721468 17721468 + Silent SNP T T C novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . PADI6 NM_207421 exon13 c.T1359C p.S453S CATGAGTAAGACC . 52.0 18.0 62.0 0.0 . 51 . . . none . . PASS Atlas-SNP NT5C1A 84618 hgsc.bcm.edu hg19 1 40126872 40126872 + Missense_Mutation SNP C C T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . NT5C1A NM_032526 exon5 c.G620A p.R207H GCCACGCGCAGCT . 75.0 8.0 78.0 0.0 . 46 . . . none . . PASS Atlas-SNP TGFBR3 7049 hgsc.bcm.edu hg19 1 92182200 92182200 + Silent SNP C C T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . TGFBR3 NM_003243 exon11 c.G1632A p.E544E ACCTGACTCCAGA . 215.0 93.0 210.0 0.0 . 103 . . . none . . PASS Atlas-SNP GLMN 11146 hgsc.bcm.edu hg19 1 92712690 92712690 + Missense_Mutation SNP A A T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . GLMN NM_053274 exon18 c.T1597A p.S533T CTTTAGATTTCTG . 21.0 6.0 40.0 0.0 . 37 . . . none . . PASS Atlas-SNP NUF2 83540 hgsc.bcm.edu hg19 1 163318835 163318835 + Missense_Mutation SNP A A C novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . NUF2 NM_145697 exon13 c.A1225C p.K409Q CAACTAAAAGATG . 567.0 41.0 556.0 0.0 . 138 . . . none . . PASS Atlas-SNP ABL2 27 hgsc.bcm.edu hg19 1 179078368 179078368 + Missense_Mutation SNP C C A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . ABL2 NM_007314 exon12 c.G2034T p.Q678H ATGGGGCTGATTC . 108.0 46.0 92.0 0.0 . 307 . . . none . . PASS Atlas-SNP TRMT1L 81627 hgsc.bcm.edu hg19 1 185106774 185106774 + Nonsense_Mutation SNP C C A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . TRMT1L NM_030934 exon10 c.G1477T p.E493X TTCTCTCTTCACA . 83.0 26.0 93.0 0.0 . 50 . . . none . . PASS Atlas-SNP FAM89A 375061 hgsc.bcm.edu hg19 1 231155814 231155814 + Missense_Mutation SNP G G A rs147790876 TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 FAM89A,NS,carcinoma,+1,1 FAM89A NM_198552 exon2 c.C350T p.S117L TGAATCGACTCGT . 44.0 20.0 43.0 0.0 . 8 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP NBAS 51594 hgsc.bcm.edu hg19 2 15534394 15534394 + Missense_Mutation SNP C C G novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . NBAS NM_015909 exon28 c.G3214C p.A1072P TGCGTGCCTCTTC . 112.0 28.0 102.0 0.0 . 246 . . . none . . PASS Atlas-SNP USP34 9736 hgsc.bcm.edu hg19 2 61433163 61433163 + Missense_Mutation SNP T T C novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . USP34 NM_014709 exon72 c.A9143G p.N3048S CAGGCATTTCTAA . 80.0 38.0 93.0 0.0 . 334 . . . none . . PASS Atlas-SNP USP34 9736 hgsc.bcm.edu hg19 2 61433164 61433164 + Missense_Mutation SNP T T A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . USP34 NM_014709 exon72 c.A9142T p.N3048Y AGGCATTTCTAAG . 82.0 38.0 93.0 0.0 . 334 . . . none . . PASS Atlas-SNP TTC21B 79809 hgsc.bcm.edu hg19 2 166799781 166799781 + Missense_Mutation SNP T T C novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . TTC21B NM_024753 exon5 c.A500G p.Y167C TCAAAATACTTCA . 108.0 51.0 120.0 0.0 . 130 . . . none . . PASS Atlas-SNP PIKFYVE 200576 hgsc.bcm.edu hg19 2 209150550 209150550 + Silent SNP T T C novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . PIKFYVE NM_015040 exon6 c.T714C p.D238D TTCAGATTCTGCT . 95.0 41.0 97.0 0.0 . 223 . . . none . . PASS Atlas-SNP KIF1A 547 hgsc.bcm.edu hg19 2 241658507 241658507 + Silent SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . KIF1A NM_001244008 exon47 c.C5130T p.S1710S CTTGTCGCTGTTG . 109.0 44.0 102.0 0.0 . 152 . . . none . . PASS Atlas-SNP TBC1D23 55773 hgsc.bcm.edu hg19 3 100025388 100025388 + Splice_Site SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 TBC1D23_ENST00000394144,right_lower_lobe,carcinoma,0,2 TBC1D23 NM_018309 exon13 c.1413+1G>A . GTTGATGTAAGTA . 64.0 50.0 63.0 0.0 . 133 . . . none . . PASS Atlas-SNP WWTR1 25937 hgsc.bcm.edu hg19 3 149374844 149374844 + Missense_Mutation SNP G G C novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . WWTR1 NM_001168278 exon3 c.C250G p.H84D GGACATGCTGGGC . 78.0 61.0 55.0 0.0 . 42 . . . none . . PASS Atlas-SNP FGFRL1 53834 hgsc.bcm.edu hg19 4 1018294 1018294 + Missense_Mutation SNP T T A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . FGFRL1 NM_001004356 exon6 c.T914A p.V305E TTGTGGTGCTGCC . 162.0 55.0 132.0 0.0 . 77 . . . none . . PASS Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88536436 88536436 + Silent SNP C C T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . DSPP NM_014208 exon5 c.C2622T p.S874S CAGCAGCAACAGC . 233.0 23.0 224.0 0.0 . 174 . . . none . . PASS Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82581488 82581488 + Missense_Mutation SNP T T A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 Q9Y6V0-3,colon,carcinoma,0,3 PCLO NM_014510 exon5 c.A8781T p.E2927D GGGTTTTTCATCT . 89.0 6.0 57.0 0.0 . 1506 . . . none . . PASS Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82581494 82581494 + Missense_Mutation SNP T T A rs78195222 bycluster TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 Q9Y6V0-3,rectum,carcinoma,0,15 PCLO NM_014510 exon5 c.A8775T p.E2925D TTCATCTTCTATT . 97.0 10.0 59.0 0.0 . 1506 . . . weak T|0.500;A|0.500 0.500 PASS Atlas-SNP TRIP6 7205 hgsc.bcm.edu hg19 7 100468243 100468243 + Missense_Mutation SNP G G C novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . TRIP6 NM_003302 exon6 c.G877C p.V293L GCTGGGGTTGTGG . 87.0 25.0 47.0 0.0 . 45 . . . none . . PASS Atlas-SNP SSPO 23145 hgsc.bcm.edu hg19 7 149476014 149476014 + Missense_Mutation SNP A A G novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . . NM_198455 exon7 c.A980G p.N327S TCTACAATGGCTG . 142.0 63.0 115.0 0.0 . . . . . none . . PASS Atlas-SNP INTS8 55656 hgsc.bcm.edu hg19 8 95835690 95835690 + Missense_Mutation SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . INTS8 NM_017864 exon1 c.G31A p.A11T GAGGCGGCCACCT . 113.0 44.0 68.0 0.0 . 92 . . . none . . PASS Atlas-SNP DSCC1 79075 hgsc.bcm.edu hg19 8 120854141 120854141 + Missense_Mutation SNP C C A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . DSCC1 NM_024094 exon7 c.G817T p.A273S TTCGTGCTGCTGC . 90.0 26.0 74.0 0.0 . 40 . . . none . . PASS Atlas-SNP FAM91A1 157769 hgsc.bcm.edu hg19 8 124811759 124811759 + Splice_Site SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . FAM91A1 NM_144963 exon17 c.1561-1G>A . ATTGTAGCATATT . 60.0 16.0 75.0 0.0 . 77 . . . none . . PASS Atlas-SNP MROH6 642475 hgsc.bcm.edu hg19 8 144653908 144653908 + Silent SNP C C T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . . NM_001100878 exon3 c.G531A p.L177L TGCGCTCAGCACT . 200.0 61.0 106.0 0.0 . . . . . none . . PASS Atlas-SNP RABL6 55684 hgsc.bcm.edu hg19 9 139718091 139718091 + Missense_Mutation SNP G G T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . . NM_024718 exon2 c.G245T p.S82I TCACCAGCATCCA . 62.0 30.0 46.0 0.0 . . . . . none . . PASS Atlas-SNP ZNF248 57209 hgsc.bcm.edu hg19 10 38120750 38120750 + Missense_Mutation SNP T T G novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . ZNF248 NM_001267597 exon6 c.A1533C p.Q511H AGTTCTTTGATGT . 56.0 41.0 87.0 0.0 . 61 . . . none . . PASS Atlas-SNP CCAR1 55749 hgsc.bcm.edu hg19 10 70550999 70550999 + Silent SNP C C G novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . CCAR1 NM_018237 exon25 c.C3429G p.S1143S AAAATCCAAGGAG . 361.0 237.0 582.0 0.0 . 118 . . . none . . PASS Atlas-SNP GPR26 2849 hgsc.bcm.edu hg19 10 125447637 125447637 + Silent SNP C C T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . GPR26 NM_153442 exon3 c.C975T p.G325G CACAGGCGACTCT . 37.0 20.0 51.0 0.0 . 47 . . . none . . PASS Atlas-SNP IRF7 3665 hgsc.bcm.edu hg19 11 613956 613956 + Missense_Mutation SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . IRF7 NM_004031 exon5 c.C800T p.T267M CCTGTCGTTAGTG . 88.0 10.0 79.0 0.0 . 23 . . . none . . PASS Atlas-SNP MUC2 4583 hgsc.bcm.edu hg19 11 1093323 1093323 + Silent SNP C C T rs7948036 bycluster TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . MUC2 NM_002457 exon30 c.C5142T p.T1714T ACCCACCGGCACA . 31.0 4.0 24.0 0.0 . 614 . . . weak . . PASS Atlas-SNP OR51B4 79339 hgsc.bcm.edu hg19 11 5323073 5323073 + Missense_Mutation SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . OR51B4 NM_033179 exon1 c.C104T p.S35F AGGACGGAGAAGT . 210.0 96.0 166.0 0.0 . 64 . . . none . . PASS Atlas-SNP TTC17 55761 hgsc.bcm.edu hg19 11 43469573 43469573 + Missense_Mutation SNP G G A rs150211914 TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . TTC17 NM_018259 exon19 c.G2687A p.R896H ACCAGCGTCTGGG . 92.0 19.0 83.0 0.0 . 112 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP CDC42BPG 55561 hgsc.bcm.edu hg19 11 64601408 64601408 + Missense_Mutation SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . CDC42BPG NM_017525 exon21 c.C2455T p.R819W AGCTCCGGAAGGA . 124.0 47.0 131.0 0.0 . 101 . . . none . . PASS Atlas-SNP TIMM8B 26521 hgsc.bcm.edu hg19 11 111956122 111956122 + Missense_Mutation SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . TIMM8B NM_012459 exon2 c.C194T p.S65F GTGCGAGAGTCTA . 76.0 27.0 104.0 0.0 . 13 . . . none . . PASS Atlas-SNP WNK1 65125 hgsc.bcm.edu hg19 12 1005251 1005251 + Silent SNP A A G novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . WNK1 NM_001184985 exon24 c.A6378G p.A2126A TGCAGCAGACGGT . 149.0 59.0 144.0 0.0 . 403 . . . none . . PASS Atlas-SNP SCNN1A 6337 hgsc.bcm.edu hg19 12 6472823 6472823 + Missense_Mutation SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . SCNN1A NM_001159576 exon2 c.C647T p.T216M AAGAGCGTCTGCT . 86.0 32.0 86.0 0.0 . 54 . . . none . . PASS Atlas-SNP ITGA5 3678 hgsc.bcm.edu hg19 12 54792434 54792434 + Missense_Mutation SNP G G C novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . ITGA5 NM_002205 exon28 c.C2890G p.L964V TCTTCAGGGCTTT . 94.0 36.0 82.0 0.0 . 99 . . . none . . PASS Atlas-SNP EFS 10278 hgsc.bcm.edu hg19 14 23828684 23828684 + Missense_Mutation SNP G G A rs147068550 TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . EFS NM_005864 exon4 c.C1003T p.R335W GAGGCCGGTCCTG . 39.0 14.0 25.0 0.0 . 37 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP RIPK3 11035 hgsc.bcm.edu hg19 14 24807103 24807103 + Missense_Mutation SNP G G T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . RIPK3 NM_006871 exon6 c.C808A p.P270T CCTTGGGCTCACT . 81.0 31.0 97.0 0.0 . 43 . . . none . . PASS Atlas-SNP SYT16 83851 hgsc.bcm.edu hg19 14 62462841 62462841 + Nonsense_Mutation SNP T T A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . SYT16 NM_031914 exon1 c.T104A p.L35X ATATGTTATCTGC . 136.0 47.0 133.0 0.0 . 144 . . . none . . PASS Atlas-SNP SYT16 83851 hgsc.bcm.edu hg19 14 62462842 62462842 + Missense_Mutation SNP A A T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . SYT16 NM_031914 exon1 c.A105T p.L35F TATGTTATCTGCT . 136.0 46.0 133.0 0.0 . 144 . . . none . . PASS Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105408237 105408237 + Silent SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . AHNAK2 NM_138420 exon7 c.C13551T p.S4517S GTCGGCGGAAGGG . 117.0 54.0 143.0 0.0 . 719 . . . none . . PASS Atlas-SNP VPS39 23339 hgsc.bcm.edu hg19 15 42456665 42456665 + Silent SNP A A G novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . VPS39 NM_015289 exon19 c.T1917C p.A639A CTCTCCAGCTGGG . 77.0 31.0 61.0 0.0 . 53 . . . none . . PASS Atlas-SNP DUOXA1 90527 hgsc.bcm.edu hg19 15 45411430 45411430 + Silent SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . DUOXA1 NM_144565 exon9 c.C906T p.L302L GCTCAGGAGTCCA . 130.0 56.0 79.0 0.0 . 32 . . . none . . PASS Atlas-SNP MYO9A 4649 hgsc.bcm.edu hg19 15 72192260 72192260 + Missense_Mutation SNP G G C novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . MYO9A NM_006901 exon24 c.C3238G p.L1080V GGAGAAGAGCAGC . 72.0 28.0 58.0 0.0 . 203 . . . none . . PASS Atlas-SNP SLC28A1 9154 hgsc.bcm.edu hg19 15 85452001 85452001 + Missense_Mutation SNP T T C novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . SLC28A1 NM_004213 exon9 c.T770C p.L257P AGGCGCTGGTCAA . 56.0 24.0 49.0 0.0 . 118 . . . none . . PASS Atlas-SNP AKAP13 11214 hgsc.bcm.edu hg19 15 86122639 86122639 + Missense_Mutation SNP A A C novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . AKAP13 NM_007200 exon7 c.A1340C p.Q447P TGCTTCAGAGAGA . 207.0 94.0 159.0 0.0 . 394 . . . none . . PASS Atlas-SNP TMC5 79838 hgsc.bcm.edu hg19 16 19474683 19474683 + Silent SNP T T A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . TMC5 NM_001105249 exon7 c.T1230A p.I410I CTCCATTTCCCGG . 78.0 30.0 109.0 0.0 . 169 . . . none . . PASS Atlas-SNP RBBP6 5930 hgsc.bcm.edu hg19 16 24578519 24578519 + Missense_Mutation SNP T T C novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . RBBP6 NM_018703 exon15 c.T1645C p.S549P GGCCCGTCACTAC . 125.0 40.0 108.0 0.0 . 158 . . . none . . PASS Atlas-SNP BCKDK 10295 hgsc.bcm.edu hg19 16 31121525 31121525 + Splice_Site SNP G G T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . BCKDK NM_001271926 exon6 c.424-1G>T . CCTGCAGATCAAG . 78.0 32.0 79.0 0.0 . 52 . . . none . . PASS Atlas-SNP SRR 63826 hgsc.bcm.edu hg19 17 2226627 2226627 + Missense_Mutation SNP G G T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . SRR NM_021947 exon7 c.G792T p.E264D CACAGAGGATGAA . 144.0 17.0 172.0 0.0 . 21 . . . none . . PASS Atlas-SNP ZNF594 84622 hgsc.bcm.edu hg19 17 5085263 5085263 + Nonsense_Mutation SNP A A T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . ZNF594 NM_032530 exon2 c.T2289A p.C763X CTGATTACACCAA . 94.0 33.0 90.0 0.0 . 89 . . . none . . PASS Atlas-SNP GRN 2896 hgsc.bcm.edu hg19 17 42427873 42427873 + Missense_Mutation SNP A A C novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . GRN NM_002087 exon6 c.A526C p.T176P GTTCACACCCGCT . 62.0 8.0 54.0 0.0 . 51 . . . none . . PASS Atlas-SNP GREB1L 80000 hgsc.bcm.edu hg19 18 19031043 19031043 + Nonsense_Mutation SNP G G T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . GREB1L NM_001142966 exon13 c.G1780T p.E594X TTGAAAGAAATTA . 87.0 9.0 93.0 0.0 . 69 . . . none . . PASS Atlas-SNP ESCO1 114799 hgsc.bcm.edu hg19 18 19154134 19154134 + Missense_Mutation SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . ESCO1 NM_052911 exon4 c.C671T p.S224F TTTTCAGATCCTT . 50.0 20.0 52.0 0.0 . 89 . . . none . . PASS Atlas-SNP MEX3C 51320 hgsc.bcm.edu hg19 18 48703464 48703464 + Missense_Mutation SNP C C T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . MEX3C NM_016626 exon2 c.G1237A p.D413N TTACATCGGTACC . 76.0 4.0 75.0 0.0 . 77 . . . none . . PASS Atlas-SNP NFIC 4782 hgsc.bcm.edu hg19 19 3381992 3381992 + Missense_Mutation SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . NFIC NM_001245004 exon2 c.G313A p.V105M GGCTGCGTGCTCT . 68.0 7.0 60.0 0.0 . 36 . . . none . . PASS Atlas-SNP CYP2A13 1553 hgsc.bcm.edu hg19 19 41596036 41596036 + Missense_Mutation SNP G G T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 CYP2A13,NS,carcinoma,0,1 CYP2A13 NM_000766 exon3 c.G428T p.R143L GCAAGCGCGGCAT . 176.0 20.0 146.0 0.0 . 90 . . . none . . PASS Atlas-SNP CYP2A13 1553 hgsc.bcm.edu hg19 19 41596037 41596037 + Silent SNP C C T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . CYP2A13 NM_000766 exon3 c.C429T p.R143R CAAGCGCGGCATC . 176.0 20.0 144.0 0.0 . 90 . . . none . . PASS Atlas-SNP HNRNPUL1 11100 hgsc.bcm.edu hg19 19 41808585 41808585 + Missense_Mutation SNP C C A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . HNRNPUL1 NM_007040 exon12 c.C1703A p.P568Q CGTTGCCAGATGT . 82.0 23.0 85.0 0.0 . 73 . . . none . . PASS Atlas-SNP BCAM 4059 hgsc.bcm.edu hg19 19 45322442 45322442 + Missense_Mutation SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . BCAM NM_001013257 exon11 c.G1466A p.G489E AATTGGGGGGCAG . 79.0 37.0 85.0 0.0 . 53 . . . none . . PASS Atlas-SNP USP29 57663 hgsc.bcm.edu hg19 19 57640983 57640983 + Missense_Mutation SNP C C A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . USP29 NM_020903 exon4 c.C940A p.L314I GACTTACTCACTC . 127.0 42.0 120.0 0.0 . 186 . . . none . . PASS Atlas-SNP USP29 57663 hgsc.bcm.edu hg19 19 57640984 57640984 + Missense_Mutation SNP T T A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . USP29 NM_020903 exon4 c.T941A p.L314H ACTTACTCACTCA . 128.0 45.0 120.0 0.0 . 186 . . . none . . PASS Atlas-SNP VN1R1 57191 hgsc.bcm.edu hg19 19 57967199 57967199 + Missense_Mutation SNP A A G novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . VN1R1 NM_020633 exon1 c.T656C p.L219S GCATGTAATGAGC . 100.0 38.0 91.0 0.0 . 48 . . . none . . PASS Atlas-SNP ZNF341 84905 hgsc.bcm.edu hg19 20 32376749 32376749 + Missense_Mutation SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . ZNF341 NM_032819 exon13 c.G1912A p.E638K ATCCACGAGCCCT . 199.0 24.0 209.0 0.0 . 73 . . . none . . PASS Atlas-SNP ADNP 23394 hgsc.bcm.edu hg19 20 49510165 49510165 + Silent SNP T T C novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . ADNP NM_015339 exon5 c.A1086G p.Q362Q CTGAGATTGTTGA . 63.0 22.0 66.0 0.0 . 106 . . . none . . PASS Atlas-SNP SMARCB1 6598 hgsc.bcm.edu hg19 22 24176330 24176330 + Missense_Mutation SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 SMARCB1_ENST00000344921,NS,carcinoma,0,4 SMARCB1 NM_003073 exon9 c.G1121A p.R374Q CCAGGCGGATGAG . 64.0 44.0 98.0 0.0 . 586 . . . none . . PASS Atlas-SNP VSIG4 11326 hgsc.bcm.edu hg19 X 65253395 65253395 + Silent SNP G G A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . VSIG4 NM_001100431 exon2 c.C333T p.Y111Y ACACGTGTAGTGG . 133.0 104.0 91.0 0.0 . 54 . . . none . . PASS Atlas-SNP AMOT 154796 hgsc.bcm.edu hg19 X 112065566 112065566 + Nonsense_Mutation SNP A A T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . AMOT NM_001113490 exon1 c.T789A p.Y263X CTCACTATAGAAG . 62.0 49.0 63.0 0.0 . 204 . . . none . . PASS Atlas-SNP AP2A1 160 hgsc.bcm.edu hg19 19 50305265 50305285 + In_Frame_Del DEL CTGGGGCTGCGGGCAGCCCCT CTGGGGCTGCGGGCAGCCCCT - novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 CTGGGGCTGCGGGCAGCCCCT CTGGGGCTGCGGGCAGCCCCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . AP2A1 NM_130787 exon15 c.1980_2000del p.660_667del . . 58.0 13.0 82.0 0.0 . 108 . 0.224138 0 none . . PASS Atlas-Indel,Pindel PLEKHO2 80301 hgsc.bcm.edu hg19 15 65157740 65157740 + Frame_Shift_Del DEL C C - novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . PLEKHO2 NM_025201 exon6 c.1125delG p.L375fs . . 54.0 24.0 43.0 0.0 . 50 . 0.444444 0 none . . PASS Atlas-Indel,Pindel PCCB 5096 hgsc.bcm.edu hg19 3 135974705 135974706 + Frame_Shift_Ins INS - - A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . PCCB NM_001178014 exon2 c.191_192insA p.L64fs . . 113.0 50.0 110.0 0.0 . 52 . 0.442478 0 none . . PASS Atlas-Indel,Pindel ZNF77 58492 hgsc.bcm.edu hg19 19 2936619 2936620 + Frame_Shift_Ins INS - - A novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . ZNF77 NM_021217 exon3 c.214_215insT p.V72fs . . 80.0 30.0 68.0 0.0 . 47 . 0.375 0 none . . PASS Atlas-Indel,Pindel RNF216 54476 hgsc.bcm.edu hg19 7 5792508 5792510 + In_Frame_Del DEL TCT TCT - novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 TCT TCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . RNF216 NM_207111 exon3 c.169_171del p.57_57del . . 104.0 20.0 53.0 0.0 . 71 . 0.192308 0 none . . PASS Atlas-Indel,Pindel UBE3B 89910 hgsc.bcm.edu hg19 12 109961880 109961880 + Frame_Shift_Del DEL C C - novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . UBE3B NM_183415 exon22 c.2461delT p.S821fs . . 63.0 19.0 81.0 0.0 . 116 . 0.301587 0 none . . PASS Atlas-Indel,Pindel CD3EAP 10849 hgsc.bcm.edu hg19 19 45911526 45911526 + Frame_Shift_Del DEL G G - novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . CD3EAP NM_012099 exon3 c.299delA p.E100fs . . 70.0 32.0 51.0 0.0 . 27 . 0.457143 0 none . . PASS Atlas-Indel,Pindel ABCG1 9619 hgsc.bcm.edu hg19 21 43693428 43693428 + Frame_Shift_Del DEL G G - novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . ABCG1 NM_207174 exon4 c.452delA p.K151fs . . 84.0 33.0 55.0 0.0 . 140 . 0.392857 0 none . . PASS Atlas-Indel,Pindel CASC3 22794 hgsc.bcm.edu hg19 17 38297029 38297030 + Frame_Shift_Del DEL GT GT - novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 GT GT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . CASC3 NM_007359 exon1 c.227_228del p.76_76del . . 114.0 34.0 106.0 0.0 . 39 . 0.298246 0 none . . PASS Atlas-Indel,Pindel PTDSS2 81490 hgsc.bcm.edu hg19 11 460237 460243 + Frame_Shift_Del DEL ATGTGAC ATGTGAC - novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 ATGTGAC ATGTGAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . PTDSS2 NM_030783 exon2 c.232_238del p.78_80del . . 111.0 32.0 148.0 0.0 . 27 . 0.288288 0 none . . PASS Atlas-Indel,Pindel RP1L1 94137 hgsc.bcm.edu hg19 8 10466011 10466031 + In_Frame_Del DEL TCCCCTTCAGCCTCCTGGGCA TCCCCTTCAGCCTCCTGGGCA - novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 TCCCCTTCAGCCTCCTGGGCA TCCCCTTCAGCCTCCTGGGCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 RP1L1,NS,malignant_melanoma,0,1 RP1L1 NM_178857 exon4 c.5578_5598del p.1860_1866del . . 45.0 14.0 38.0 0.0 . 453 . 0.311111 0 none . . PASS Atlas-INDEL CACNA1S 779 hgsc.bcm.edu hg19 1 201009812 201009815 + Frame_Shift_Del DEL GCAT GCAT - novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 GCAT GCAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . CACNA1S NM_000069 exon42 c.5162_5165del p.1721_1722del . . 45.0 18.0 59.0 0.0 . 249 . 0.4 0 none . . PASS Atlas-Indel,Pindel ASAP2 8853 hgsc.bcm.edu hg19 2 9347341 9347342 + Frame_Shift_Del DEL TG TG - novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 TG TG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . ASAP2 NM_001135191 exon1 c.107_108del p.36_36del . . 96.0 24.0 70.0 0.0 . 91 . 0.25 0 none . . PASS Atlas-Indel,Pindel FAM172A 83989 hgsc.bcm.edu hg19 5 93217216 93217216 + Frame_Shift_Del DEL T T - novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . FAM172A NM_032042 exon7 c.747delC p.N249fs . . 88.0 35.0 75.0 0.0 . 38 . 0.397727 0 none . . PASS Atlas-Indel,Pindel SLC12A7 10723 hgsc.bcm.edu hg19 5 1094341 1094342 + In_Frame_Ins INS - - TTT novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . SLC12A7 NM_006598 exon2 c.147_148insAAA p.N49delinsKN . . 84.0 35.0 86.0 0.0 . 97 . 0.416667 0 none . . PASS Atlas-Indel,Pindel TRPM1 4308 hgsc.bcm.edu hg19 15 31330016 31330017 + Frame_Shift_Del DEL CT CT - novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 TRPM1,colon,carcinoma,0,1 TRPM1 NM_001252020 exon19 c.2520_2521del p.840_841del . . 87.0 30.0 63.0 0.0 . 183 . 0.344828 0 none . . PASS Atlas-Indel,Pindel ZNF141 7700 hgsc.bcm.edu hg19 4 367429 367430 + In_Frame_Ins INS - - ACA novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . ZNF141 NM_003441 exon4 c.1203_1204insACA p.G401delinsGT . . 277.0 110.0 304.0 0.0 . 48 . 0.397112 0 none . . PASS Atlas-Indel,Pindel ATP7B 540 hgsc.bcm.edu hg19 13 52516678 52516679 + Frame_Shift_Ins INS - - T novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . ATP7B NM_000053 exon15 c.3256_3257insA p.E1086fs . . 42.0 15.0 57.0 0.0 . 123 . 0.357143 0 none . . PASS Atlas-Indel,Pindel PBRM1 55193 hgsc.bcm.edu hg19 3 52597437 52597437 + Frame_Shift_Del DEL A A - novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 .,3 PBRM1 NM_018313 exon25 c.3874delG p.A1292fs . . 108.0 89.0 100.0 0.0 . 1252 . 0.824074 0 none . . PASS Atlas-Indel,Pindel SETD2 29072 hgsc.bcm.edu hg19 3 47162892 47162892 + Frame_Shift_Del DEL C C - novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . SETD2 NM_014159 exon3 c.3235delC p.P1079fs . . 48.0 41.0 40.0 0.0 . 721 . 0.854167 0 none . . PASS Atlas-Indel,Pindel GLRB 2743 hgsc.bcm.edu hg19 4 157999276 157999277 + In_Frame_Ins INS - - AGAAGCAGTATCTATGCCCATCGTATGTTCTTCATGTCTTATATT novel TCGA-5P-A9JU-01A-11D-A42J-10 TCGA-5P-A9JU-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d6969c41-5fa5-4853-95a0-0e473b44a505 f87abecd-d116-48b1-bf22-7584bab45053 . GLRB NM_000824 exon2 c.100_101insAGAAGCAGTATCTATGCCCATCGTATGTTCTTCATGTCTTATATT p.K34delinsKKQYLCPSYVLHVLYX . . 111.0 21.0 129.0 0.0 . 74 . 0.189 . none . . PASS Pindel