Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm FAM213B 127281 hgsc.bcm.edu hg19 1 2518720 2518720 + Missense_Mutation SNP A A T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . . NM_001195736 exon2 c.A344T p.D115V ACGGCGACTACTT . 58.0 31.0 68.0 0.0 . . . . . none . . PASS Atlas-SNP UBE4B 10277 hgsc.bcm.edu hg19 1 10177640 10177640 + Missense_Mutation SNP G G C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . UBE4B NM_001105562 exon8 c.G1320C p.E440D AATAGAGGAAAAA . 355.0 154.0 319.0 1.0 . 233 . . . none . . PASS Atlas-SNP FHAD1 114827 hgsc.bcm.edu hg19 1 15627701 15627701 + Missense_Mutation SNP G G T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . FHAD1 NM_052929 exon6 c.G679T p.D227Y ACCCAGGATGAAA . 100.0 49.0 99.0 0.0 . 78 . . . none . . PASS Atlas-SNP S100A6 6277 hgsc.bcm.edu hg19 1 153507304 153507304 + Silent SNP C C T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . S100A6 NM_014624 exon3 c.G141A p.K47K CTGCAGCTTCTAA . 72.0 38.0 78.0 0.0 . 8 . . . none . . PASS Atlas-SNP C1orf43 25912 hgsc.bcm.edu hg19 1 154180025 154180025 + Silent SNP T T G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . C1orf43 NM_001098616 exon7 c.A666C p.T222T GAGGTATGTCACC . 112.0 40.0 154.0 0.0 . 36 . . . none . . PASS Atlas-SNP YY1AP1 55249 hgsc.bcm.edu hg19 1 155646420 155646420 + Silent SNP A A C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . YY1AP1 NM_001198904 exon4 c.T657G p.V219V GGGTTTAACCTTC . 92.0 8.0 85.0 0.0 . 104 . . . none . . PASS Atlas-SNP LHX4 89884 hgsc.bcm.edu hg19 1 180235629 180235629 + Nonsense_Mutation SNP C C A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . LHX4 NM_033343 exon3 c.C351A p.C117X TGCTTGCATCATC . 113.0 49.0 110.0 0.0 . 36 . . . none . . PASS Atlas-SNP IARS2 55699 hgsc.bcm.edu hg19 1 220267580 220267580 + Missense_Mutation SNP C C T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . IARS2 NM_018060 exon1 c.C22T p.R8C CGCCCTCGCGGGC . 76.0 19.0 89.0 0.0 . 106 . . . none . . PASS Atlas-SNP TLR5 7100 hgsc.bcm.edu hg19 1 223285550 223285550 + Missense_Mutation SNP T T A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . TLR5 NM_003268 exon6 c.A824T p.K275I GGATCTTTGATGT . 147.0 62.0 157.0 0.0 . 86 . . . none . . PASS Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237713903 237713903 + Silent SNP C C A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . RYR2 NM_001035 exon27 c.C3126A p.T1042T CCGAACCAAGAAA . 180.0 83.0 175.0 0.0 . 1273 . . . none . . PASS Atlas-SNP GRHL1 29841 hgsc.bcm.edu hg19 2 10105481 10105481 + Missense_Mutation SNP T T C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . GRHL1 NM_198182 exon8 c.T1081C p.F361L ATTTCCTTCACAT . 85.0 38.0 86.0 0.0 . 95 . . . none . . PASS Atlas-SNP GRHL1 29841 hgsc.bcm.edu hg19 2 10105483 10105483 + Silent SNP C C T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . GRHL1 NM_198182 exon8 c.C1083T p.F361F TTCCTTCACATGG . 87.0 38.0 87.0 0.0 . 95 . . . none . . PASS Atlas-SNP ADCY3 109 hgsc.bcm.edu hg19 2 25095499 25095499 + Silent SNP G G A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ADCY3 NM_004036 exon2 c.C765T p.F255F CTCCAGGAAGGCC . 135.0 7.0 182.0 0.0 . 114 . . . none . . PASS Atlas-SNP SULT1C4 27233 hgsc.bcm.edu hg19 2 108999668 108999668 + Silent SNP T T C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . SULT1C4 NM_006588 exon4 c.T513C p.A171A TCTGGCTGGGAAA . 126.0 40.0 146.0 0.0 . 41 . . . none . . PASS Atlas-SNP MERTK 10461 hgsc.bcm.edu hg19 2 112767644 112767644 + Splice_Site SNP G G C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . MERTK NM_006343 exon15 c.2079+1G>C . CCAAAGGTAATGA . 54.0 16.0 52.0 0.0 . 112 . . . none . . PASS Atlas-SNP KLHL23 151230 hgsc.bcm.edu hg19 2 170592248 170592248 + Nonsense_Mutation SNP C C T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . KLHL23 NM_144711 exon2 c.C724T p.Q242X GGCCTTCAAAGAA . 277.0 127.0 301.0 0.0 . 52 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179506980 179506980 + Missense_Mutation SNP T T G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . TTN NM_001267550 exon219 c.A40542C p.E13514D AACAACTTCTTCC . 123.0 55.0 120.0 0.0 . 18412 . . . none . . PASS Atlas-SNP INO80D 54891 hgsc.bcm.edu hg19 2 206921321 206921321 + Missense_Mutation SNP C C G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . INO80D NM_017759 exon4 c.G565C p.V189L GTCGAACTTTTAA . 76.0 38.0 89.0 0.0 . 134 . . . none . . PASS Atlas-SNP DGKD 8527 hgsc.bcm.edu hg19 2 234343452 234343452 + Missense_Mutation SNP A A T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . DGKD NM_152879 exon5 c.A491T p.H164L GGATGCACAATTG . 69.0 22.0 75.0 0.0 . 106 . . . none . . PASS Atlas-SNP CHL1 10752 hgsc.bcm.edu hg19 3 433428 433428 + Silent SNP A A G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . CHL1 NM_001253388 exon21 c.A2862G p.L954L GGGACTACCTAAG . 117.0 5.0 106.0 0.0 . 242 . . . none . . PASS Atlas-SNP CNTN6 27255 hgsc.bcm.edu hg19 3 1424739 1424739 + Silent SNP G G A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a CNTN6,NS,carcinoma,+1,1 CNTN6 NM_014461 exon18 c.G2280A p.R760R ATCAAGGTTTGTC . 243.0 90.0 279.0 0.0 . 245 . . . none . . PASS Atlas-SNP CXCR6 10663 hgsc.bcm.edu hg19 3 45988986 45988986 + Missense_Mutation SNP G G A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . CXCR6 NM_006564 exon2 c.G1013A p.S338N CCACCAGCATGTT . 113.0 40.0 98.0 0.0 . 17 . . . none . . PASS Atlas-SNP PHF7 51533 hgsc.bcm.edu hg19 3 52456291 52456291 + Missense_Mutation SNP A A G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . PHF7 NM_016483 exon9 c.A734G p.Y245C AGCGCTATCAGCA . 102.0 38.0 89.0 0.0 . 29 . . . none . . PASS Atlas-SNP ABI3BP 25890 hgsc.bcm.edu hg19 3 100565235 100565235 + Silent SNP T T C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ABI3BP NM_015429 exon18 c.A1578G p.E526E TGTCACTTCTGGG . 134.0 62.0 109.0 0.0 . 305 . . . none . . PASS Atlas-SNP PLOD2 5352 hgsc.bcm.edu hg19 3 145806425 145806425 + Nonsense_Mutation SNP A A T rs367818257 alternate_allele TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . PLOD2 NM_182943 exon9 c.T953A p.L318X GTCAACAATATGT . 434.0 187.0 386.0 1.0 . 81 . . . alt . . PASS Atlas-SNP PRKCI 5584 hgsc.bcm.edu hg19 3 170016826 170016826 + Missense_Mutation SNP C C A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a PRKCI,NS,carcinoma,0,1 PRKCI NM_002740 exon17 c.C1631A p.S544Y ATATTTCTGGGGA . 140.0 70.0 99.0 0.0 . 82 . . . none . . PASS Atlas-SNP C4orf46 201725 hgsc.bcm.edu hg19 4 159592804 159592804 + Silent SNP C C T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . C4orf46 NM_001008393 exon1 c.G150A p.V50V CTGGTCCACCGTT . 226.0 100.0 236.0 0.0 . 11 . . . none . . PASS Atlas-SNP MFAP3L 9848 hgsc.bcm.edu hg19 4 170913146 170913146 + Missense_Mutation SNP C C T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a MFAP3L,caecum,carcinoma,0,1 MFAP3L NM_021647 exon3 c.G613A p.A205T GCTTGGCGATCTC . 122.0 44.0 137.0 0.0 . 59 . . . none . . PASS Atlas-SNP SV2C 22987 hgsc.bcm.edu hg19 5 75427885 75427885 + Missense_Mutation SNP G G C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . SV2C NM_014979 exon2 c.G310C p.D104H GCGAAGGACAGCA . 123.0 49.0 117.0 0.0 . 97 . . . none . . PASS Atlas-SNP MEF2C 4208 hgsc.bcm.edu hg19 5 88027620 88027620 + Missense_Mutation SNP A A C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . MEF2C NM_001193347 exon9 c.T790G p.L264V TTCCTAAATTCAT . 81.0 5.0 92.0 0.0 . 184 . . . none . . PASS Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 89949370 89949370 + Missense_Mutation SNP G G C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . GPR98 NM_032119 exon20 c.G3979C p.A1327P ACGGATGCTTTGT . 151.0 69.0 149.0 0.0 . 605 . . . none . . PASS Atlas-SNP FGFR4 2264 hgsc.bcm.edu hg19 5 176518791 176518791 + Missense_Mutation SNP T T C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . FGFR4 NM_022963 exon5 c.T709C p.Y237H TATAACTACCTGC . 86.0 29.0 91.0 0.0 . 174 . . . none . . PASS Atlas-SNP SLC22A1 6580 hgsc.bcm.edu hg19 6 160560884 160560884 + Missense_Mutation SNP A A T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a SLC22A1,colon,carcinoma,0,1 SLC22A1 NM_153187 exon7 c.A1261T p.I421F GTCATGATTTTTA . 32.0 4.0 35.0 2.0 . 69 . . . none . . PASS Atlas-SNP FAM20C 56975 hgsc.bcm.edu hg19 7 208933 208933 + Missense_Mutation SNP A A G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . FAM20C NM_020223 exon3 c.A820G p.M274V CTCATCATGACCT . 112.0 36.0 84.0 0.0 . 18 . . . none . . PASS Atlas-SNP TNS3 64759 hgsc.bcm.edu hg19 7 47451362 47451362 + Missense_Mutation SNP A A T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . TNS3 NM_022748 exon13 c.T686A p.V229D TCGATGACGATGC . 160.0 102.0 116.0 0.0 . 140 . . . none . . PASS Atlas-SNP ATP5J2-PTCD1 100526740 hgsc.bcm.edu hg19 7 99023210 99023210 + Silent SNP T T C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . . NM_001198879 exon7 c.A1092G p.L364L CGGCTGTAGCCCT . 70.0 37.0 64.0 0.0 . . . . . none . . PASS Atlas-SNP MET 4233 hgsc.bcm.edu hg19 7 116417457 116417457 + Missense_Mutation SNP G G A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . MET NM_001127500 exon16 c.G3328A p.V1110I GGTTGTGTATATC . 153.0 95.0 140.0 0.0 . 412 . . . none . . PASS Atlas-SNP BMP1 649 hgsc.bcm.edu hg19 8 22069171 22069171 + Missense_Mutation SNP T T G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . BMP1 NM_006129 exon20 c.T2891G p.I964S ACACCATCACCAA . 88.0 35.0 79.0 0.0 . 131 . . . none . . PASS Atlas-SNP LYN 4067 hgsc.bcm.edu hg19 8 56922657 56922657 + Missense_Mutation SNP G G C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . LYN NM_002350 exon13 c.G1527C p.Q509H ATACCAGCAGCAG . 173.0 59.0 187.0 0.0 . 54 . . . none . . PASS Atlas-SNP LYN 4067 hgsc.bcm.edu hg19 8 56922659 56922659 + Missense_Mutation SNP A A T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . LYN NM_002350 exon13 c.A1529T p.Q510L ACCAGCAGCAGCC . 171.0 59.0 184.0 0.0 . 54 . . . none . . PASS Atlas-SNP DECR1 1666 hgsc.bcm.edu hg19 8 91055027 91055027 + Missense_Mutation SNP A A C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a DECR1,colon,carcinoma,0,1 DECR1 NM_001359 exon7 c.A737C p.K246T AAACCAAAGTAAG . 79.0 35.0 64.0 0.0 . 37 . . . none . . PASS Atlas-SNP RBM12B 389677 hgsc.bcm.edu hg19 8 94748429 94748429 + Missense_Mutation SNP C C G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . RBM12B NM_203390 exon3 c.G210C p.E70D AAAGAGCTCTACA . 105.0 45.0 100.0 0.0 . 78 . . . none . . PASS Atlas-SNP RC3H2 54542 hgsc.bcm.edu hg19 9 125612011 125612011 + Silent SNP G G C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . RC3H2 NM_001100588 exon21 c.C3471G p.T1157T AGATGTGGTGATG . 150.0 58.0 187.0 0.0 . 150 . . . none . . PASS Atlas-SNP ANXA7 310 hgsc.bcm.edu hg19 10 75156296 75156296 + Missense_Mutation SNP T T G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ANXA7 NM_004034 exon5 c.A416C p.Q139P GTAGGTTGTCCTC . 355.0 149.0 324.0 0.0 . 50 . . . none . . PASS Atlas-SNP PSMD13 5719 hgsc.bcm.edu hg19 11 244701 244701 + Missense_Mutation SNP C C G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . PSMD13 NM_175932 exon4 c.C342G p.I114M AGTGATCCTGTGT . 359.0 143.0 377.0 0.0 . 53 . . . none . . PASS Atlas-SNP OR51A7 119687 hgsc.bcm.edu hg19 11 4929473 4929473 + Missense_Mutation SNP T T A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . OR51A7 NM_001004749 exon1 c.T874A p.C292S GTGTACTGTGTAA . 102.0 44.0 116.0 0.0 . 86 . . . none . . PASS Atlas-SNP ELP4 26610 hgsc.bcm.edu hg19 11 31531372 31531372 + Missense_Mutation SNP C C G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ELP4 NM_019040 exon1 c.C41G p.T14S CGAGTACTGGGTC . 88.0 45.0 114.0 0.0 . 78 . . . none . . PASS Atlas-SNP DAGLA 747 hgsc.bcm.edu hg19 11 61507009 61507009 + Missense_Mutation SNP C C A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . DAGLA NM_006133 exon17 c.C1729A p.L577M ACCACCCTGGCCA . 73.0 35.0 97.0 0.0 . 109 . . . none . . PASS Atlas-SNP C11orf48 79081 hgsc.bcm.edu hg19 11 62432403 62432403 + Missense_Mutation SNP G G A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . C11orf48 NM_024099 exon5 c.C581T p.S194L GCTCCCGATTCAA . 95.0 36.0 76.0 0.0 . 18 . . . none . . PASS Atlas-SNP BSCL2 26580 hgsc.bcm.edu hg19 11 62474607 62474607 + Nonsense_Mutation SNP G G A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . BSCL2 NM_001122955 exon1 c.C61T p.Q21X TGATCTGGTCTCC . 108.0 46.0 114.0 0.0 . 35 . . . none . . PASS Atlas-SNP IGSF9B 22997 hgsc.bcm.edu hg19 11 133805518 133805518 + Missense_Mutation SNP C C T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . IGSF9B NM_014987 exon7 c.G961A p.V321M ACTGCACGGTCAG . 59.0 19.0 48.0 0.0 . 290 . . . none . . PASS Atlas-SNP HOXC6 3223 hgsc.bcm.edu hg19 12 54422675 54422675 + Missense_Mutation SNP C C A rs80157375 bycluster;by1000genomes;alternate_allele TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . HOXC6 NM_004503 exon1 c.C370A p.P124T ATTTACCCCTGGA . 35.0 16.0 42.0 0.0 . 30 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP ARHGAP9 64333 hgsc.bcm.edu hg19 12 57871296 57871296 + Missense_Mutation SNP A A C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ARHGAP9 NM_001080157 exon3 c.T702G p.N234K CAGTGAATTTATG . 201.0 82.0 274.0 0.0 . 79 . . . none . . PASS Atlas-SNP NAV3 89795 hgsc.bcm.edu hg19 12 78562567 78562567 + Missense_Mutation SNP T T G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . NAV3 NM_014903 exon24 c.T4902G p.I1634M AACCATTGAAATG . 209.0 84.0 207.0 0.0 . 506 . . . none . . PASS Atlas-SNP CCDC169-SOHLH2 100526761 hgsc.bcm.edu hg19 13 36744692 36744692 + Silent SNP C C T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . . NM_001198910 exon15 c.G1464A p.T488T AGTGCACGTCTGG . 135.0 66.0 129.0 0.0 . . . . . none . . PASS Atlas-SNP DGKH 160851 hgsc.bcm.edu hg19 13 42733507 42733507 + Missense_Mutation SNP G G A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . DGKH NM_001204504 exon7 c.G728A p.G243D AAGATGGCGTAAG . 93.0 45.0 88.0 0.0 . 106 . . . none . . PASS Atlas-SNP MYCBP2 23077 hgsc.bcm.edu hg19 13 77642846 77642846 + Missense_Mutation SNP A A C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . MYCBP2 NM_015057 exon70 c.T12025G p.S4009A CATCAGAGGAGGC . 117.0 46.0 108.0 0.0 . 1029 . . . none . . PASS Atlas-SNP NYNRIN 57523 hgsc.bcm.edu hg19 14 24868618 24868618 + Nonsense_Mutation SNP G G T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . NYNRIN NM_025081 exon2 c.G166T p.E56X CAGCTCGAGGGGC . 106.0 45.0 124.0 0.0 . 120 . . . none . . PASS Atlas-SNP PPP1R13B 23368 hgsc.bcm.edu hg19 14 104206573 104206573 + Missense_Mutation SNP T T A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . PPP1R13B NM_015316 exon12 c.A2180T p.Y727F CGCTGGTACAGCA . 53.0 27.0 55.0 0.0 . 72 . . . none . . PASS Atlas-SNP ASPG 374569 hgsc.bcm.edu hg19 14 104559866 104559866 + Missense_Mutation SNP T T A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ASPG NM_001080464 exon3 c.T230A p.L77Q CCGTGCTGGAGTG . 57.0 23.0 78.0 0.0 . 34 . . . none . . PASS Atlas-SNP MAPKBP1 23005 hgsc.bcm.edu hg19 15 42114511 42114511 + Silent SNP G G A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . MAPKBP1 NM_001128608 exon27 c.G3138A p.E1046E AGAAGAGGAGGGA . 55.0 27.0 49.0 0.0 . 120 . . . none . . PASS Atlas-SNP IGDCC4 57722 hgsc.bcm.edu hg19 15 65676599 65676599 + Silent SNP G G T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . IGDCC4 NM_020962 exon20 c.C3501A p.I1167I ACCCGAGATGAGA . 101.0 38.0 143.0 0.0 . 95 . . . none . . PASS Atlas-SNP WDR24 84219 hgsc.bcm.edu hg19 16 734812 734812 + Missense_Mutation SNP G G T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . WDR24 NM_032259 exon9 c.C2295A p.H765Q CTGCAGGTGGCCG . 77.0 42.0 106.0 0.0 . 111 . . . none . . PASS Atlas-SNP TNRC6A 27327 hgsc.bcm.edu hg19 16 24801496 24801496 + Silent SNP G G A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . TNRC6A NM_014494 exon6 c.G1533A p.E511E TGGAGAGTCAAAA . 100.0 36.0 133.0 0.0 . 171 . . . none . . PASS Atlas-SNP ELMO3 79767 hgsc.bcm.edu hg19 16 67233133 67233133 + Silent SNP A A G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a ELMO3,caecum,carcinoma,0,1 ELMO3 NM_024712 exon1 c.A63G p.G21G AAAGGGAGGACCT . 124.0 41.0 141.0 0.0 . 41 . . . none . . PASS Atlas-SNP JPH3 57338 hgsc.bcm.edu hg19 16 87724046 87724046 + Missense_Mutation SNP G G T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . JPH3 NM_020655 exon4 c.G2080T p.D694Y CGTTGGGACTTGA . 87.0 27.0 93.0 0.0 . 95 . . . none . . PASS Atlas-SNP ANKRD11 29123 hgsc.bcm.edu hg19 16 89348979 89348979 + Missense_Mutation SNP G G A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ANKRD11 NM_001256183 exon9 c.C3971T p.S1324F GTGAAAGAGACCT . 52.0 26.0 58.0 0.0 . 195 . . . none . . PASS Atlas-SNP ZNF594 84622 hgsc.bcm.edu hg19 17 5086715 5086715 + Missense_Mutation SNP A A T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ZNF594 NM_032530 exon2 c.T837A p.S279R GTGTGAACTTTGA . 44.0 31.0 35.0 0.0 . 89 . . . none . . PASS Atlas-SNP KRT17 3872 hgsc.bcm.edu hg19 17 39780421 39780421 + Missense_Mutation SNP A A G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . KRT17 NM_000422 exon1 c.T341C p.V114A ATCTTCACCTCCA . 262.0 79.0 175.0 0.0 . 57 . . . none . . PASS Atlas-SNP ASB16 92591 hgsc.bcm.edu hg19 17 42249482 42249482 + Missense_Mutation SNP A A C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ASB16 NM_080863 exon2 c.A370C p.T124P GGCTACACAGACT . 54.0 36.0 44.0 0.0 . 34 . . . none . . PASS Atlas-SNP OSBPL1A 114876 hgsc.bcm.edu hg19 18 21761235 21761235 + Silent SNP G G T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . OSBPL1A NM_080597 exon19 c.C1686A p.S562S GATCTTGGATAGT . 84.0 38.0 66.0 0.0 . 94 . . . none . . PASS Atlas-SNP SOCS6 9306 hgsc.bcm.edu hg19 18 67992862 67992862 + Missense_Mutation SNP A A T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . SOCS6 NM_004232 exon2 c.A958T p.N320Y CAGAATAATCAAA . 84.0 35.0 88.0 0.0 . 54 . . . none . . PASS Atlas-SNP ATP8B3 148229 hgsc.bcm.edu hg19 19 1802569 1802569 + Missense_Mutation SNP T T A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ATP8B3 NM_138813 exon11 c.A980T p.Y327F AGGGAGTATTTCT . 55.0 30.0 56.0 0.0 . 108 . . . none . . PASS Atlas-SNP SIPA1L3 23094 hgsc.bcm.edu hg19 19 38631838 38631838 + Missense_Mutation SNP C C G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . SIPA1L3 NM_015073 exon11 c.C3158G p.T1053S CGGAGACCTACGA . 124.0 62.0 121.0 0.0 . 150 . . . none . . PASS Atlas-SNP FBXO17 115290 hgsc.bcm.edu hg19 19 39435737 39435737 + Missense_Mutation SNP C C A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . FBXO17 NM_148169 exon5 c.G592T p.A198S CTCGAGCGCCCCA . 87.0 32.0 65.0 0.0 . 42 . . . none . . PASS Atlas-SNP EGLN2 112398 hgsc.bcm.edu hg19 19 41306764 41306764 + Missense_Mutation SNP C C T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . EGLN2 NM_053046 exon2 c.C287T p.A96V AAGGCGCTGCAGC . 72.0 37.0 79.0 0.0 . 31 . . . none . . PASS Atlas-SNP CYP2S1 29785 hgsc.bcm.edu hg19 19 41703754 41703754 + Silent SNP G G C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . CYP2S1 NM_030622 exon3 c.G414C p.L138L GGACCTGGGCATG . 77.0 22.0 79.0 0.0 . 47 . . . none . . PASS Atlas-SNP ZNF649 65251 hgsc.bcm.edu hg19 19 52400157 52400157 + Missense_Mutation SNP C C G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ZNF649 NM_023074 exon3 c.G90C p.K30N CAGGTCCTTCTGA . 127.0 47.0 147.0 0.0 . 72 . . . none . . PASS Atlas-SNP U2AF2 11338 hgsc.bcm.edu hg19 19 56180949 56180949 + Missense_Mutation SNP A A T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a U2AF2,NS,carcinoma,0,1 U2AF2 NM_007279 exon11 c.A1184T p.Y395F AGGAGTATGAGGA . 145.0 62.0 173.0 0.0 . 62 . . . none . . PASS Atlas-SNP ZNF543 125919 hgsc.bcm.edu hg19 19 57840518 57840518 + Missense_Mutation SNP C C A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ZNF543 NM_213598 exon4 c.C1688A p.T563N ACCCTACCATTGT . 230.0 11.0 165.0 0.0 . 61 . . . none . . PASS Atlas-SNP SMOX 54498 hgsc.bcm.edu hg19 20 4167467 4167467 + Missense_Mutation SNP G G C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . SMOX NM_001270691 exon7 c.G1608C p.R536S TAACAGGGGCGCC . 92.0 30.0 54.0 0.0 . 119 . . . none . . PASS Atlas-SNP PAX1 5075 hgsc.bcm.edu hg19 20 21695396 21695396 + Silent SNP C C T rs368125977 TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . PAX1 NM_006192 exon5 c.C1560T p.F520F ACACTTCCTTTAT . 88.0 59.0 76.0 0.0 . 152 . . . weak . . PASS Atlas-SNP SLC32A1 140679 hgsc.bcm.edu hg19 20 37356236 37356236 + Nonsense_Mutation SNP G G T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a SLC32A1,NS,carcinoma,0,2 SLC32A1 NM_080552 exon2 c.G532T p.E178X GACGGCGAGGTGG . 44.0 2.0 30.0 0.0 . 81 . . . none . . PASS Atlas-SNP PTPRT 11122 hgsc.bcm.edu hg19 20 40790019 40790019 + Missense_Mutation SNP C C G novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . PTPRT NM_133170 exon18 c.G2712C p.Q904H GTAGCCCTGGCCT . 148.0 48.0 108.0 0.0 . 372 . . . none . . PASS Atlas-SNP PTGIS 5740 hgsc.bcm.edu hg19 20 48129710 48129710 + Silent SNP G G A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a PTGIS,colon,carcinoma,0,1 PTGIS NM_000961 exon8 c.C1113T p.D371D TCGCCCGTCTGCC . 109.0 34.0 75.0 0.0 . 60 . . . none . . PASS Atlas-SNP PHACTR3 116154 hgsc.bcm.edu hg19 20 58415459 58415459 + Missense_Mutation SNP G G A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . PHACTR3 NM_080672 exon10 c.G1420A p.E474K AGAAGAGAAATCA . 334.0 87.0 244.0 0.0 . 104 . . . none . . PASS Atlas-SNP C22orf42 150297 hgsc.bcm.edu hg19 22 32555136 32555136 + Missense_Mutation SNP C C T novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . C22orf42 NM_001010859 exon1 c.G67A p.D23N CCACATCTGGCCT . 80.0 34.0 62.0 0.0 . 37 . . . none . . PASS Atlas-SNP NOL12 79159 hgsc.bcm.edu hg19 22 38087326 38087326 + Silent SNP C C A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . NOL12 NM_024313 exon6 c.C625A p.R209R AAAGCACGGCACA . 240.0 108.0 253.0 1.0 . 22 . . . none . . PASS Atlas-SNP HUWE1 10075 hgsc.bcm.edu hg19 X 53566667 53566667 + Silent SNP C C A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . HUWE1 NM_031407 exon75 c.G11583T p.G3861G ACACTCCCCAAGC . 107.0 52.0 100.0 0.0 . 724 . . . none . . PASS Atlas-SNP MAGEE1 57692 hgsc.bcm.edu hg19 X 75651091 75651091 + Missense_Mutation SNP G G A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . MAGEE1 NM_020932 exon1 c.G2768A p.R923K TCCACAGAAAGGA . 367.0 130.0 426.0 0.0 . 236 . . . none . . PASS Atlas-SNP TCEAL3 85012 hgsc.bcm.edu hg19 X 102864302 102864302 + Missense_Mutation SNP G G C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . TCEAL3 NM_001006933 exon3 c.G310C p.D104H GCTGAAGATTATG . 275.0 120.0 318.0 0.0 . 24 . . . none . . PASS Atlas-SNP SASH3 54440 hgsc.bcm.edu hg19 X 128922424 128922424 + Silent SNP A A C novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . SASH3 NM_018990 exon3 c.A171C p.S57S TGACTCAGGTGTC . 350.0 27.0 404.0 0.0 . 35 . . . none . . PASS Atlas-SNP ZKSCAN4 387032 hgsc.bcm.edu hg19 6 28213691 28213692 + Frame_Shift_Del DEL GC GC - novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 GC GC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ZKSCAN4 NM_019110 exon5 c.841_842del p.281_281del . . 85.0 36.0 108.0 0.0 . 42 . 0.423529 0 none . . PASS Atlas-Indel,Pindel HNRNPA1 3178 hgsc.bcm.edu hg19 12 54675281 54675282 + Frame_Shift_Del DEL TG TG - novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 TG TG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . HNRNPA1 NM_002136 exon2 c.126_127del p.42_43del . . 36.0 16.0 31.0 0.0 . 72 . 0.444444 0 none . . PASS Atlas-Indel,Pindel FSD2 123722 hgsc.bcm.edu hg19 15 83428118 83428118 + Frame_Shift_Del DEL T T - novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . FSD2 NM_001007122 exon13 c.2233delC p.H745fs . . 67.0 34.0 80.0 0.0 . 45 . 0.507463 0 none . . PASS Atlas-Indel,Pindel ITIH3 3699 hgsc.bcm.edu hg19 3 52835082 52835082 + Frame_Shift_Del DEL T T - novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ITIH3 NM_002217 exon11 c.1302delC p.N434fs . . 153.0 59.0 170.0 0.0 . 132 . 0.385621 0 none . . PASS Atlas-Indel,Pindel ING4 51147 hgsc.bcm.edu hg19 12 6760546 6760546 + Frame_Shift_Del DEL G G - novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ING4 NM_001127582 exon7 c.655delA p.I219fs . . 164.0 13.0 103.0 0.0 . 31 . 0.0792683 0 none . . PASS Atlas-INDEL MYO3B 140469 hgsc.bcm.edu hg19 2 171319897 171319898 + Frame_Shift_Ins INS - - A novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . MYO3B NM_001083615 exon24 c.2750_2751insA p.I917fs . . 108.0 50.0 123.0 0.0 . 320 . 0.462963 0 none . . PASS Atlas-Indel,Pindel ATCAY 85300 hgsc.bcm.edu hg19 19 3905489 3905489 + Frame_Shift_Del DEL C C - novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ATCAY NM_033064 exon4 c.193delG p.A65fs . . 115.0 43.0 127.0 0.0 . 84 . 0.373913 0 none . . PASS Atlas-Indel,Pindel PEX5L 51555 hgsc.bcm.edu hg19 3 179615950 179615950 + Frame_Shift_Del DEL G G - novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . PEX5L NM_016559 exon3 c.179delT p.L60fs . . 112.0 45.0 98.0 0.0 . 104 . 0.401786 0 none . . PASS Atlas-Indel,Pindel RNF32 140545 hgsc.bcm.edu hg19 7 156451243 156451243 + Frame_Shift_Del DEL A A - novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . RNF32 NM_030936 exon7 c.662delG p.R221fs . . 204.0 103.0 125.0 0.0 . 77 . 0.504902 0 none . . PASS Atlas-Indel,Pindel ZDHHC7 55625 hgsc.bcm.edu hg19 16 85012877 85012877 + Frame_Shift_Del DEL C C - novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ZDHHC7 NM_001145548 exon6 c.567delT p.C189X . . 207.0 90.0 256.0 0.0 . 55 . 0.434783 0 none . . PASS Atlas-Indel,Pindel MAP3K6 9064 hgsc.bcm.edu hg19 1 27689486 27689486 + Frame_Shift_Del DEL T T - novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . MAP3K6 NM_004672 exon7 c.999delG p.K333fs . . 170.0 70.0 187.0 0.0 . 134 . 0.411765 0 none . . PASS Atlas-Indel,Pindel ABI3BP 25890 hgsc.bcm.edu hg19 3 100565237 100565237 + Frame_Shift_Del DEL C C - novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ABI3BP NM_015429 exon18 c.1577delA p.E526fs . . 133.0 60.0 108.0 0.0 . 305 . 0.451128 0 none . . PASS Atlas-INDEL ABI3BP 25890 hgsc.bcm.edu hg19 3 100565235 100565237 + In_Frame_Del DEL TTC TTC - novel TCGA-4A-A93W-01A-11D-A36X-10 TCGA-4A-A93W-10A-01D-A370-10 TTC TTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9c87c7ca-a0f4-4ba3-93f2-2d9f3a1db03a afcc0a63-8340-47fc-a4da-380a1f4fda4a . ABI3BP NM_015429 exon18 c.1577_1579del p.526_527del . . 132.0 43.0 107.0 0.0 . 305 . 0.326 . none . . PASS Pindel