Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PRDM16	63976	hgsc.bcm.edu	hg19	1	3334463	3334463	+	Silent	SNP	C	C	G	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	PRDM16	NM_022114	exon11	c.C2763G	p.S921S	CAGCTCCCTGCAG	.	315.0	109.0	395.0	0.0	.	147	.	.	.	none	.	.	PASS	Atlas-SNP
ZMYM6	9204	hgsc.bcm.edu	hg19	1	35452999	35452999	+	Silent	SNP	G	G	A	rs61744849		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	ZMYM6	NM_007167	exon16	c.C3684T	p.T1228T	GAAGTCGGTGAGA	.	90.0	4.0	98.0	0.0	.	110	.	.	.	weak	G|0.986;A|0.014	0.014	PASS	Atlas-SNP
FLAD1	80308	hgsc.bcm.edu	hg19	1	154956520	154956520	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	FLAD1	NM_025207	exon1	c.T350G	p.I117S	TCATCATTGTTGG	.	54.0	28.0	41.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
INSRR	3645	hgsc.bcm.edu	hg19	1	156823981	156823981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	INSRR	NM_014215	exon2	c.A200G	p.D67G	CGGAAGTCCTCCC	.	63.0	22.0	49.0	0.0	.	309	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1804	0	hgsc.bcm.edu	hg19	1	233518353	233518353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	KIAA1804	NM_032435	exon10	c.G3007T	p.D1003Y	GATGCTGACGTGG	.	91.0	33.0	49.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
GLS	2744	hgsc.bcm.edu	hg19	2	191769861	191769861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	GLS	NM_014905	exon6	c.T947C	p.L316P	GTGGACTAAGATT	.	75.0	4.0	85.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	hg19	2	225688357	225688357	+	Missense_Mutation	SNP	C	C	T	rs375357151	bycluster	TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	DOCK10	NM_014689	exon28	c.G3044A	p.R1015Q	TGAGGCCGGGGAA	.	42.0	20.0	27.0	0.0	.	308	.	.	.	weak	.	.	PASS	Atlas-SNP
RAB17	64284	hgsc.bcm.edu	hg19	2	238494751	238494751	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	RAB17	NM_022449	exon2	c.A47T	p.Q16L	CGGGGCTGGCTGG	.	95.0	29.0	103.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	hg19	2	241696846	241696846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	KIF1A	NM_001244008	exon27	c.G2748T	p.E916D	ATCCTCCTCCTCC	.	137.0	16.0	119.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1D	776	hgsc.bcm.edu	hg19	3	53845336	53845336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	CACNA1D	NM_000720	exon49	c.T6449C	p.L2150P	ATGAGCTACAGGA	.	85.0	29.0	64.0	0.0	.	324	.	.	.	none	.	.	PASS	Atlas-SNP
SHQ1	55164	hgsc.bcm.edu	hg19	3	72842103	72842103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	SHQ1	NM_018130	exon10	c.A1145G	p.Y382C	GAGATGTAGAGAT	.	54.0	17.0	51.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
PIK3CB	5291	hgsc.bcm.edu	hg19	3	138478176	138478176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	PIK3CB,NS,carcinoma,0,1	PIK3CB	NM_006219	exon1	c.A10G	p.S4G	TGAAACTGAAGCA	.	239.0	81.0	222.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
EIF4G1	1981	hgsc.bcm.edu	hg19	3	184052524	184052524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	EIF4G1	NM_001194946	exon34	c.G4649A	p.R1550Q	TGCTGCGGATGTT	.	54.0	19.0	68.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
ARAP2	116984	hgsc.bcm.edu	hg19	4	36179487	36179487	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	ARAP2	NM_015230	exon9	c.T1819G	p.L607V	CACTTAACACAGT	.	54.0	20.0	46.0	0.0	.	210	.	.	.	none	.	.	PASS	Atlas-SNP
SLC4A9	83697	hgsc.bcm.edu	hg19	5	139747021	139747021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	SLC4A9	NM_001258428	exon15	c.G2102A	p.R701H	CTGGGCGTGGCTG	.	24.0	20.0	18.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
TINAG	27283	hgsc.bcm.edu	hg19	6	54214540	54214540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	TINAG	NM_014464	exon7	c.T926C	p.L309P	ACCCACTTTTCAA	.	87.0	43.0	81.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56494230	56494230	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	DST	NM_001723	exon18	c.T2682C	p.S894S	TACTTCAGATCTC	.	64.0	26.0	45.0	0.0	.	1427	.	.	.	none	.	.	PASS	Atlas-SNP
LAMA4	3910	hgsc.bcm.edu	hg19	6	112430643	112430643	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	LAMA4	NM_001105206	exon39	c.C5469T	p.A1823A	ATGTCAGGCTGCT	.	48.0	25.0	56.0	0.0	.	227	.	.	.	none	.	.	PASS	Atlas-SNP
LAMA4	3910	hgsc.bcm.edu	hg19	6	112430644	112430644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	LAMA4	NM_001105206	exon39	c.C5468A	p.A1823D	TGTCAGGCTGCTG	.	49.0	25.0	56.0	0.0	.	227	.	.	.	none	.	.	PASS	Atlas-SNP
RAPGEF5	9771	hgsc.bcm.edu	hg19	7	22200190	22200190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	RAPGEF5	NM_012294	exon14	c.T1013C	p.I338T	TCAAGTATTGGAT	.	41.0	19.0	29.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
VPS41	27072	hgsc.bcm.edu	hg19	7	38902201	38902201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	VPS41	NM_080631	exon4	c.T190A	p.Y64N	TGCCATAATGTGT	.	101.0	35.0	53.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
PHF20L1	51105	hgsc.bcm.edu	hg19	8	133823301	133823301	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	PHF20L1	NM_016018	exon9	c.A858G	p.A286A	GTTGGCATCCAAA	.	84.0	51.0	69.0	0.0	.	129	.	.	.	none	.	.	PASS	Atlas-SNP
RECQL4	9401	hgsc.bcm.edu	hg19	8	145741535	145741535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	RECQL4	NM_004260	exon5	c.G968A	p.S323N	GAGGGGCTGAGTC	.	61.0	37.0	84.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
TSTD2	158427	hgsc.bcm.edu	hg19	9	100389788	100389788	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	TSTD2	NM_139246	exon2	c.A57C	p.R19S	AGAAAATCTTAAA	.	69.0	21.0	74.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
GATA3	2625	hgsc.bcm.edu	hg19	10	8111467	8111467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	GATA3	NM_001002295	exon5	c.C956A	p.A319E	CCTGTGCGAACTG	.	60.0	21.0	68.0	0.0	.	182	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF438	220929	hgsc.bcm.edu	hg19	10	31138190	31138190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	ZNF438	NM_182755	exon7	c.A1144G	p.R382G	CTTTTCTCTTTGC	.	51.0	22.0	65.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	56423964	56423964	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	PCDH15	NM_001142763	exon2	c.T59A	p.L20H	TCAAAGAGAGAGC	.	76.0	27.0	36.0	0.0	.	1715	.	.	.	none	.	.	PASS	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	hg19	10	129910660	129910660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	MKI67	NM_002417	exon9	c.T1706C	p.V569A	ACTTCCACATGGA	.	70.0	30.0	61.0	0.0	.	363	.	.	.	none	.	.	PASS	Atlas-SNP
NLRP14	338323	hgsc.bcm.edu	hg19	11	7083573	7083573	+	Silent	SNP	C	C	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	NLRP14	NM_176822	exon10	c.C2814A	p.G938G	GATGGGCTGTGTT	.	94.0	38.0	75.0	0.0	.	187	.	.	.	none	.	.	PASS	Atlas-SNP
NUMA1	4926	hgsc.bcm.edu	hg19	11	71716361	71716361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	NUMA1	NM_006185	exon23	c.A5747G	p.D1916G	TTCCAGTCATCCA	.	31.0	15.0	41.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
MMP10	4319	hgsc.bcm.edu	hg19	11	102649966	102649966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	MMP10	NM_002425	exon3	c.A474G	p.I158M	GATCATTATATCA	.	91.0	33.0	56.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
GRIK4	2900	hgsc.bcm.edu	hg19	11	120745851	120745851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	GRIK4	NM_014619	exon9	c.G1063A	p.E355K	CAGGTAGAATTGG	.	62.0	20.0	44.0	0.0	.	149	.	.	.	none	.	.	PASS	Atlas-SNP
ITFG2	55846	hgsc.bcm.edu	hg19	12	2929937	2929937	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	ITFG2	NM_018463	exon6	c.G594A	p.L198L	TGAACTGATGGTG	.	61.0	22.0	54.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
KLRG1	10219	hgsc.bcm.edu	hg19	12	9161629	9161629	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	KLRG1	NM_005810	exon4	c.C416G	p.S139C	ACAATTCTGGCTG	.	106.0	46.0	86.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
PAN2	9924	hgsc.bcm.edu	hg19	12	56718077	56718077	+	Splice_Site	SNP	C	C	T	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	PAN2	NM_014871	exon13	c.1928+1G>A	.	TTCATACCTGCCT	.	28.0	12.0	20.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57548344	57548344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	LRP1,NS,carcinoma,0,1	LRP1	NM_002332	exon8	c.G1087A	p.D363N	CTCGTCGACAGCA	.	101.0	33.0	81.0	1.0	.	428	.	.	.	none	.	.	PASS	Atlas-SNP
GLI1	2735	hgsc.bcm.edu	hg19	12	57858618	57858618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	GLI1	NM_005269	exon4	c.G356A	p.G119D	CAGGAGGCTCCTA	.	33.0	15.0	52.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
USP44	84101	hgsc.bcm.edu	hg19	12	95922715	95922715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	USP44	NM_032147	exon3	c.G1492A	p.E498K	GAAACTCCAATGA	.	49.0	21.0	68.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
USP44	84101	hgsc.bcm.edu	hg19	12	95922716	95922716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	USP44	NM_032147	exon3	c.G1491T	p.L497F	AAACTCCAATGAC	.	49.0	21.0	67.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
CKAP4	10970	hgsc.bcm.edu	hg19	12	106633493	106633493	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	CKAP4	NM_006825	exon2	c.T1118G	p.L373R	TCCTCCAGTCTCC	.	44.0	13.0	51.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
PARP4	143	hgsc.bcm.edu	hg19	13	25033245	25033245	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	PARP4	NM_006437	exon20	c.G2361C	p.M787I	AATAGACATAGTC	.	223.0	84.0	226.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
TSC22D1	8848	hgsc.bcm.edu	hg19	13	45148240	45148240	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	TSC22D1	NM_183422	exon1	c.A1971G	p.V657V	CTGTTGTACATAC	.	42.0	4.0	33.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
EXD2	55218	hgsc.bcm.edu	hg19	14	69697226	69697226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	EXD2	NM_001193361	exon4	c.C628A	p.L210I	AAGTCCCTCGCTG	.	58.0	19.0	46.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
KIF26A	26153	hgsc.bcm.edu	hg19	14	104618786	104618786	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	KIF26A	NM_015656	exon3	c.G723A	p.P241P	CCTCCCGCCGGCG	.	49.0	15.0	90.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
PKM	5315	hgsc.bcm.edu	hg19	15	72502795	72502795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	PKM	NM_001206796	exon5	c.G493A	p.V165M	TGCGCACATTCTT	.	56.0	23.0	48.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
ARIH1	25820	hgsc.bcm.edu	hg19	15	72855824	72855824	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	ARIH1	NM_005744	exon7	c.A894C	p.K298N	CTGCAAATGTGGG	.	85.0	30.0	96.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
KIF1C	10749	hgsc.bcm.edu	hg19	17	4925768	4925768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	KIF1C	NM_006612	exon22	c.G2392T	p.A798S	TGGAGGGCTGTGG	.	92.0	5.0	90.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
MPDU1	9526	hgsc.bcm.edu	hg19	17	7490749	7490749	+	Silent	SNP	C	C	T	rs371550829		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	MPDU1	NM_004870	exon7	c.C624T	p.T208T	GGAAACCGGAGAT	.	53.0	19.0	69.0	0.0	.	14	.	.	.	weak	.	.	PASS	Atlas-SNP
FNDC8	54752	hgsc.bcm.edu	hg19	17	33457438	33457438	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	FNDC8	NM_017559	exon4	c.C960T	p.Y320Y	GGAATACCTATTT	.	33.0	6.0	39.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
ASB16	92591	hgsc.bcm.edu	hg19	17	42254547	42254547	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	ASB16	NM_080863	exon3	c.A1011T	p.E337D	GCCTGAAGTCCTT	.	83.0	21.0	67.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
JMJD6	23210	hgsc.bcm.edu	hg19	17	74714915	74714915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	JMJD6	NM_001081461	exon6	c.A1108G	p.T370A	GCACTGTCCCATC	.	58.0	4.0	63.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
CHST9	83539	hgsc.bcm.edu	hg19	18	24722672	24722672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	CHST9	NM_001256316	exon2	c.G102T	p.W34C	TTCAATCCAGACT	.	30.0	16.0	45.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF567	163081	hgsc.bcm.edu	hg19	19	37210602	37210602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	ZNF567	NM_152603	exon4	c.G883T	p.D295Y	CTCACTGATCATC	.	93.0	21.0	83.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
REM1	28954	hgsc.bcm.edu	hg19	20	30064340	30064340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	REM1	NM_014012	exon2	c.G92A	p.G31D	AGCCTGGCCGCCT	.	102.0	37.0	118.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
HNF1B	6928	hgsc.bcm.edu	hg19	17	36104669	36104680	+	In_Frame_Del	DEL	GTGGCCGTTGGT	GTGGCCGTTGGT	-	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	GTGGCCGTTGGT	GTGGCCGTTGGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	HNF1B	NM_001165923	exon1	c.197_208del	p.66_70del	.	.	86.0	35.0	96.0	0.0	.	61	.	0.406977	0	none	.	.	PASS	Atlas-Indel,Pindel
DMPK	1760	hgsc.bcm.edu	hg19	19	46273845	46273847	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	DMPK	NM_001081563	exon14	c.1820_1822del	p.607_608del	.	.	210.0	68.0	335.0	0.0	.	74	.	0.32381	0	none	.	.	PASS	Atlas-Indel,Pindel
PSMD1	5707	hgsc.bcm.edu	hg19	2	232030606	232030607	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	PSMD1	NM_002807	exon23	c.2590_2591insA	p.E864fs	.	.	36.0	13.0	41.0	0.0	.	77	.	0.361111	0	none	.	.	PASS	Atlas-INDEL
CCDC88B	283234	hgsc.bcm.edu	hg19	11	64110796	64110797	+	Frame_Shift_Ins	INS	-	-	GGCAT	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	CCDC88B	NM_032251	exon11	c.1208_1209insGGCAT	p.A403fs	.	.	76.0	12.0	76.0	0.0	.	89	.	0.157895	0	none	.	.	PASS	Atlas-Indel,Pindel
ITGAX	3687	hgsc.bcm.edu	hg19	16	31371685	31371696	+	In_Frame_Del	DEL	CATTGTCATCAC	CATTGTCATCAC	-	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	CATTGTCATCAC	CATTGTCATCAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	ITGAX	NM_000887	exon8	c.761_772del	p.254_258del	.	.	50.0	19.0	49.0	0.0	.	198	.	0.38	0	none	.	.	PASS	Atlas-Indel,Pindel
NHSL1	57224	hgsc.bcm.edu	hg19	6	138745824	138745824	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	NHSL1	NM_020464	exon7	c.4228delC	p.Q1410fs	.	.	41.0	11.0	55.0	0.0	.	99	.	0.268293	0	none	.	.	PASS	Atlas-INDEL
VWF	7450	hgsc.bcm.edu	hg19	12	6061052	6061053	+	Splice_Site	DEL	AA	AA	-	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	VWF	.	.	.	.	.	.	139.0	47.0	123.0	0.0	.	338	.	0.338129	0	none	.	.	PASS	Atlas-Indel,Pindel
UGT1A7	54577	hgsc.bcm.edu	hg19	2	234590634	234590634	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	UGT1A7	NM_019077	exon1	c.50delT	p.L17fs	.	.	55.0	22.0	50.0	0.0	.	74	.	0.4	0	none	.	.	PASS	Atlas-INDEL
MAP2K3	5606	hgsc.bcm.edu	hg19	17	21203904	21203904	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	MAP2K3	NM_145109	exon4	c.212delG	p.G71fs	.	.	140.0	13.0	98.0	0.0	.	135	.	0.0928571	0	none	.	.	PASS	Atlas-INDEL
SEC14L1	6397	hgsc.bcm.edu	hg19	17	75202482	75202482	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	SEC14L1	NM_001143998	exon12	c.1340delT	p.L447fs	.	.	93.0	29.0	62.0	0.0	.	81	.	0.311828	0	none	.	.	PASS	Atlas-Indel,Pindel
KIRREL	55243	hgsc.bcm.edu	hg19	1	158058227	158058227	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	KIRREL	NM_018240	exon8	c.1026delC	p.T342fs	.	.	121.0	28.0	136.0	0.0	.	346	.	0.231	.	none	.	.	PASS	Pindel
UGT1A7	54577	hgsc.bcm.edu	hg19	2	234590634	234590635	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-2Z-A9JP-01A-11D-A42J-10	TCGA-2Z-A9JP-10A-01D-A42M-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce839b6-a61e-4bd6-9fd4-2c885a257ac7	8f3d9061-9b3b-4029-9155-3d169642c461	.	UGT1A7	NM_019077	exon1	c.50_51del	p.17_17del	.	.	57.0	16.0	51.0	0.0	.	74	.	0.281	.	none	.	.	PASS	Pindel