Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm OTUD3 23252 hgsc.bcm.edu hg19 1 20233044 20233044 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . OTUD3 NM_015207 exon7 c.G955A p.E319K AGGACCGAAAACA . 126.0 10.0 151.0 0.0 . 25 . . . none . . PASS Atlas-SNP INADL 10207 hgsc.bcm.edu hg19 1 62253584 62253584 + Silent SNP C C G novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . INADL NM_176877 exon8 c.C1008G p.P336P CACCCCCCCTGCC . 46.0 13.0 44.0 0.0 . 179 . . . none . . PASS Atlas-SNP ATG4C 84938 hgsc.bcm.edu hg19 1 63294738 63294738 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . ATG4C NM_178221 exon7 c.A824G p.Q275R ATAAACAGAGTGC . 133.0 37.0 133.0 0.0 . 96 . . . none . . PASS Atlas-SNP FMO2 2327 hgsc.bcm.edu hg19 1 171162500 171162500 + Silent SNP T T C novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . FMO2 NM_001460 exon3 c.T159C p.S53S AGCAAGTATCTAT . 53.0 21.0 89.0 0.0 . 66 . . . none . . PASS Atlas-SNP ZAP70 7535 hgsc.bcm.edu hg19 2 98354318 98354318 + Silent SNP C C T novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . ZAP70 NM_001079 exon12 c.C1581T p.V527V TGGGGTCACCATG . 60.0 22.0 73.0 0.0 . 77 . . . none . . PASS Atlas-SNP NEB 4703 hgsc.bcm.edu hg19 2 152410531 152410531 + Nonsense_Mutation SNP G G T novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . NEB NM_001271208 exon126 c.C19437A p.Y6479X TGATCTGTACAGG . 74.0 4.0 90.0 0.0 . 1697 . . . none . . PASS Atlas-SNP PROM1 8842 hgsc.bcm.edu hg19 4 16002183 16002183 + Missense_Mutation SNP A A T novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . PROM1 NM_006017 exon13 c.T1514A p.F505Y AAGACAAAGGTAA . 41.0 15.0 34.0 0.0 . 91 . . . none . . PASS Atlas-SNP MANBA 4126 hgsc.bcm.edu hg19 4 103560989 103560989 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . MANBA NM_005908 exon14 c.C1895A p.T632K GTTTCTGTTTTGA . 82.0 4.0 87.0 0.0 . 78 . . . none . . PASS Atlas-SNP C5orf42 65250 hgsc.bcm.edu hg19 5 37170251 37170251 + Missense_Mutation SNP A A C novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . C5orf42 NM_023073 exon33 c.T6354G p.F2118L TTTAATAAAAAAT . 132.0 41.0 108.0 0.0 . 422 . . . none . . PASS Atlas-SNP LRRC1 55227 hgsc.bcm.edu hg19 6 53784349 53784349 + Missense_Mutation SNP T T A novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . LRRC1 NM_018214 exon12 c.T1160A p.L387Q TGTGGCTATCTGA . 91.0 28.0 105.0 0.0 . 59 . . . none . . PASS Atlas-SNP MPP6 51678 hgsc.bcm.edu hg19 7 24690128 24690128 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . MPP6 NM_016447 exon6 c.A448G p.N150D GAAAATAATGATC . 81.0 31.0 77.0 0.0 . 62 . . . none . . PASS Atlas-SNP TBRG4 9238 hgsc.bcm.edu hg19 7 45148711 45148711 + Silent SNP T T C novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . TBRG4 NM_001261834 exon2 c.A159G p.S53S GGTGGCTGAGGAA . 95.0 21.0 87.0 0.0 . 52 . . . none . . PASS Atlas-SNP MTUS1 57509 hgsc.bcm.edu hg19 8 17611702 17611702 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . MTUS1 NM_001001924 exon2 c.G1615A p.A539T ATGAGGCACTGGT . 60.0 26.0 44.0 0.0 . 144 . . . none . . PASS Atlas-SNP ANK1 286 hgsc.bcm.edu hg19 8 41583374 41583374 + Missense_Mutation SNP G G A rs368414600 TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . ANK1 NM_001142446 exon6 c.C616T p.R206C GGAGGCGCACCTT . 76.0 28.0 81.0 0.0 . 497 . . . weak . . PASS Atlas-SNP CACNB2 783 hgsc.bcm.edu hg19 10 18550223 18550223 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . CACNB2 NM_000724 exon1 c.C25T p.R9C GTGCATCGCCGGC . 56.0 13.0 84.0 0.0 . 220 . . . none . . PASS Atlas-SNP C10orf118 55088 hgsc.bcm.edu hg19 10 115922396 115922396 + Missense_Mutation SNP T T C novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . C10orf118 NM_018017 exon2 c.A632G p.K211R ACTTACTTTTTTA . 67.0 25.0 67.0 0.0 . 70 . . . none . . PASS Atlas-SNP FAM160A2 84067 hgsc.bcm.edu hg19 11 6236092 6236092 + Silent SNP G G A novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . FAM160A2 NM_032127 exon10 c.C2307T p.N769N GACGGAGTTCTGC . 44.0 14.0 59.0 0.0 . 100 . . . none . . PASS Atlas-SNP NPAT 4863 hgsc.bcm.edu hg19 11 108043763 108043763 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . NPAT NM_002519 exon13 c.G1948A p.E650K GAGCTTCATTTTC . 55.0 15.0 53.0 0.0 . 124 . . . none . . PASS Atlas-SNP PCED1B 91523 hgsc.bcm.edu hg19 12 47629401 47629401 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . . NM_138371 exon2 c.G555T p.K185N GCAGAAGGCCACC . 45.0 17.0 29.0 0.0 . . . . . none . . PASS Atlas-SNP EEA1 8411 hgsc.bcm.edu hg19 12 93171433 93171433 + Silent SNP A A G novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . EEA1 NM_003566 exon27 c.T3900C p.L1300L TCCTTTAAGACAT . 69.0 17.0 58.0 0.0 . 104 . . . none . . PASS Atlas-SNP PPP2R5E 5529 hgsc.bcm.edu hg19 14 63842804 63842804 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . PPP2R5E NM_006246 exon14 c.C1327T p.R443C CTTCACGCTCCTT . 45.0 13.0 55.0 0.0 . 43 . . . none . . PASS Atlas-SNP RCCD1 91433 hgsc.bcm.edu hg19 15 91500569 91500569 + Silent SNP T T A novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . RCCD1 NM_001017919 exon3 c.T393A p.A131A CCAGGCTGGGAGG . 63.0 22.0 58.0 0.0 . 9 . . . none . . PASS Atlas-SNP PDILT 204474 hgsc.bcm.edu hg19 16 20371931 20371931 + Silent SNP G G A novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . PDILT NM_174924 exon11 c.C1465T p.L489L TTTCCAGGAAGTC . 81.0 17.0 84.0 0.0 . 120 . . . none . . PASS Atlas-SNP TK2 7084 hgsc.bcm.edu hg19 16 66547633 66547633 + Splice_Site SNP C C G novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . TK2 NM_001272050 exon10 c.408+1G>C . TACTTACCAGAAC . 56.0 19.0 57.0 0.0 . 17 . . . none . . PASS Atlas-SNP TANGO6 79613 hgsc.bcm.edu hg19 16 69117519 69117519 + Silent SNP G G A rs376805485 alternate_allele TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . . NM_024562 exon18 c.G3240A p.L1080L CTTCCTGTTCCCT . 69.0 4.0 84.0 0.0 . . . . . alt . . PASS Atlas-SNP SUPT6H 6830 hgsc.bcm.edu hg19 17 27005195 27005195 + Silent SNP A A C novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . SUPT6H NM_003170 exon9 c.A1101C p.R367R CATGCGAAATCAG . 112.0 35.0 85.0 0.0 . 165 . . . none . . PASS Atlas-SNP AKAP1 8165 hgsc.bcm.edu hg19 17 55183561 55183561 + Missense_Mutation SNP G G C rs145117487 alternate_allele TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . AKAP1 NM_001242902 exon3 c.G736C p.G246R GATAAGGGGAAGA . 98.0 30.0 104.0 0.0 . 73 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP SOX9 6662 hgsc.bcm.edu hg19 17 70117912 70117912 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . SOX9 NM_000346 exon1 c.A380G p.Y127C ACCAGTACCCGCA . 168.0 59.0 242.0 0.0 . 91 . . . none . . PASS Atlas-SNP FXYD1 5348 hgsc.bcm.edu hg19 19 35631004 35631004 + Missense_Mutation SNP C C G novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . FXYD1 NM_005031 exon2 c.C21G p.I7M CCACATCTTGGTT . 17.0 6.0 23.0 0.0 . 6 . . . none . . PASS Atlas-SNP ZIM3 114026 hgsc.bcm.edu hg19 19 57646984 57646984 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . ZIM3 NM_052882 exon5 c.C721A p.H241N TCTGATGTTGAAA . 31.0 11.0 51.0 0.0 . 107 . . . none . . PASS Atlas-SNP GUCD1 83606 hgsc.bcm.edu hg19 22 24942883 24942883 + Missense_Mutation SNP A A T novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . . NM_031444 exon4 c.T385A p.C129S CTCACCATTTCTC . 55.0 12.0 79.0 0.0 . . . . . none . . PASS Atlas-SNP ACE2 59272 hgsc.bcm.edu hg19 X 15596288 15596288 + Silent SNP G G A novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . ACE2 NM_021804 exon10 c.C1221T p.I407I TGACATGATTTCC . 129.0 44.0 154.0 0.0 . 87 . . . none . . PASS Atlas-SNP LANCL3 347404 hgsc.bcm.edu hg19 X 37431495 37431495 + Silent SNP C C T novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . LANCL3 NM_001170331 exon1 c.C372T p.G124G CGGGGGCGCGGGC . 57.0 16.0 63.0 0.0 . 42 . . . none . . PASS Atlas-SNP FAM104B 90736 hgsc.bcm.edu hg19 X 55172645 55172645 + Missense_Mutation SNP C C G rs1047042 bycluster;byfrequency;alternate_allele TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . FAM104B NM_001166699 exon3 c.G223C p.D75H TTGCATCGGGTTC . 54.0 4.0 52.0 0.0 . 28 . . . alt C|0.600;T|0.400 . PASS Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765176 66765176 + Missense_Mutation SNP A A T rs62636527 TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . AR NM_000044 exon1 c.A188T p.Q63L AGCAGCAGCAGCA . 137.0 18.0 148.0 0.0 . 249 . . . weak A|0.982;T|0.018 0.018 PASS Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765179 66765179 + Missense_Mutation SNP A A T novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . AR NM_000044 exon1 c.A191T p.Q64L AGCAGCAGCAGCA . 134.0 19.0 145.0 0.0 . 249 . . . none . . PASS Atlas-SNP MAPRE3 22924 hgsc.bcm.edu hg19 2 27247068 27247072 + Frame_Shift_Del DEL CAACC CAACC - novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 CAACC CAACC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd MAPRE3,lymph_node,lymphoid_neoplasm,0,1 MAPRE3 NM_012326 exon4 c.371_375del p.124_125del . . 111.0 35.0 123.0 0.0 . 40 . 0.315315 0 none . . PASS Atlas-Indel,Pindel ATP6V1E2 90423 hgsc.bcm.edu hg19 2 46739168 46739179 + Frame_Shift_Del DEL AGGCTTATATAA AGGCTTATATAA - novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 AGGCTTATATAA AGGCTTATATAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . ATP6V1E2 NM_080653 exon2 c.675_1795del p.225_227del . . 42.0 10.0 30.0 0.0 . 25 . 0.238095 0 none . . PASS Atlas-INDEL MYO7B 4648 hgsc.bcm.edu hg19 2 128390900 128390900 + Frame_Shift_Del DEL A A - novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . MYO7B NM_001080527 exon39 c.5394delC p.R1798fs . . 161.0 41.0 155.0 0.0 . 359 . 0.254658 0 none . . PASS Atlas-Indel,Pindel ALS2CR11 151254 hgsc.bcm.edu hg19 2 202483729 202483729 + Frame_Shift_Del DEL T T - novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . ALS2CR11 NM_001168217 exon1 c.126delC p.H42fs . . 138.0 43.0 107.0 0.0 . 194 . 0.311594 0 none . . PASS Atlas-Indel,Pindel ZNF233 353355 hgsc.bcm.edu hg19 19 44778797 44778797 + Frame_Shift_Del DEL T T - novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd .,8 ZNF233 NM_001207005 exon5 c.1983delG p.S661fs . . 53.0 53.0 59.0 0.0 . 73 . 1 0 none . . PASS Atlas-INDEL RIMBP3C 150221 hgsc.bcm.edu hg19 22 21741340 21741341 + In_Frame_Ins INS - - TGCAGG novel TCGA-2Z-A9JO-01A-11D-A42J-10 TCGA-2Z-A9JO-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq be2d72cb-f80c-4e4e-898b-bcb53f6fbee6 c3d84203-c64e-4591-bf15-d40efc7076fd . RIMBP3C NM_001128633 exon1 c.3193_3194insTGCAGG p.L1065delinsLQV . . 26.0 26.0 1.0 0.0 . 6 . 1.000 . none . . PASS Pindel