Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm SDF4 51150 hgsc.bcm.edu hg19 1 1163850 1163850 + Silent SNP G G T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . SDF4 NM_016547 exon2 c.C324A p.S108S CTACTTGGAAAAG . 48.0 14.0 49.0 0.0 . 50 . . . none . . PASS Atlas-SNP KNCN 148930 hgsc.bcm.edu hg19 1 47014904 47014904 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . KNCN NM_001097611 exon2 c.C187A p.H63N CCCCGTGGTCTGC . 101.0 30.0 113.0 0.0 . 7 . . . none . . PASS Atlas-SNP KNCN 148930 hgsc.bcm.edu hg19 1 47014905 47014905 + Missense_Mutation SNP G G C rs191194559 bycluster;by1000genomes;alternate_allele TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . KNCN NM_001097611 exon2 c.C186G p.D62E CCCGTGGTCTGCC . 101.0 30.0 113.0 0.0 . 7 . . . alt G|1.000;T|0.000 . PASS Atlas-SNP SLC44A3 126969 hgsc.bcm.edu hg19 1 95323000 95323000 + Silent SNP C C A novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . SLC44A3 NM_001114106 exon10 c.C1182A p.I394I ATTCATCCTTGCG . 114.0 32.0 121.0 0.0 . 109 . . . none . . PASS Atlas-SNP VANGL1 81839 hgsc.bcm.edu hg19 1 116206833 116206833 + Silent SNP G G T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . VANGL1 NM_138959 exon4 c.G756T p.L252L CACGCTGCAGGTG . 39.0 4.0 36.0 0.0 . 65 . . . none . . PASS Atlas-SNP LCE2B 26239 hgsc.bcm.edu hg19 1 152659505 152659505 + Silent SNP C C T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . LCE2B NM_014357 exon2 c.C186T p.G62G TGGGGGCTGCTGC . 115.0 42.0 110.0 0.0 . 40 . . . none . . PASS Atlas-SNP ISG20L2 81875 hgsc.bcm.edu hg19 1 156696838 156696838 + Missense_Mutation SNP T T C novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . ISG20L2 NM_030980 exon1 c.A607G p.I203V TGACAATGCTACA . 91.0 27.0 93.0 0.0 . 43 . . . none . . PASS Atlas-SNP SMG7 9887 hgsc.bcm.edu hg19 1 183520232 183520232 + Silent SNP C C T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . SMG7 NM_001174061 exon21 c.C3231T p.S1077S TGAGAGCAGTTGG . 112.0 28.0 154.0 0.0 . 165 . . . none . . PASS Atlas-SNP DHX57 90957 hgsc.bcm.edu hg19 2 39050399 39050399 + Silent SNP T T C novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . DHX57 NM_198963 exon17 c.A3027G p.L1009L CATCTCTAAAATT . 74.0 27.0 81.0 0.0 . 127 . . . none . . PASS Atlas-SNP THADA 63892 hgsc.bcm.edu hg19 2 43519255 43519255 + Missense_Mutation SNP G G C novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . THADA NM_001083953 exon33 c.C4925G p.A1642G TTGGAAGCAATAT . 84.0 28.0 90.0 0.0 . 131 . . . none . . PASS Atlas-SNP CWC22 57703 hgsc.bcm.edu hg19 2 180842978 180842978 + Missense_Mutation SNP T T G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . CWC22 NM_020943 exon6 c.A520C p.N174H AAATGTTGACTTT . 171.0 63.0 115.0 0.0 . 62 . . . none . . PASS Atlas-SNP GLS 2744 hgsc.bcm.edu hg19 2 191797583 191797583 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . GLS NM_001256310 exon15 c.A1792G p.S598G GAGAAAAGCTAAA . 66.0 27.0 51.0 0.0 . 47 . . . none . . PASS Atlas-SNP IL17RC 84818 hgsc.bcm.edu hg19 3 9974800 9974800 + Missense_Mutation SNP G G C novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . IL17RC NM_153461 exon19 c.G1899C p.W633C GGCTTGGTTTCAC . 39.0 11.0 26.0 0.0 . 55 . . . none . . PASS Atlas-SNP TIGIT 201633 hgsc.bcm.edu hg19 3 114026767 114026767 + Missense_Mutation SNP T T G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . TIGIT NM_173799 exon4 c.T524G p.V175G ATTCTGTGGAAGG . 137.0 36.0 172.0 0.0 . 42 . . . none . . PASS Atlas-SNP TIMMDC1 51300 hgsc.bcm.edu hg19 3 119222809 119222809 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . TIMMDC1 NM_016589 exon4 c.A458G p.N153S CAGTGAACACTAG . 55.0 13.0 44.0 0.0 . 29 . . . none . . PASS Atlas-SNP ALDH1L1 10840 hgsc.bcm.edu hg19 3 125854448 125854448 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . ALDH1L1 NM_001270364 exon12 c.G1432A p.A478T CCTTGGCTGCGGC . 38.0 12.0 26.0 0.0 . 138 . . . none . . PASS Atlas-SNP CCRL1 51554 hgsc.bcm.edu hg19 3 132319326 132319326 + Silent SNP C C T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b CCRL1,NS,carcinoma,0,2 CCRL1 NM_178445 exon1 c.C85T p.L29L TATGAACTGATCT . 231.0 11.0 240.0 1.0 . 30 . . . none . . PASS Atlas-SNP RASSF6 166824 hgsc.bcm.edu hg19 4 74459297 74459297 + Missense_Mutation SNP T T A novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . RASSF6 NM_201431 exon4 c.A254T p.K85I ATTAGTTTGCCAT . 83.0 26.0 57.0 0.0 . 68 . . . none . . PASS Atlas-SNP KIAA0947 23379 hgsc.bcm.edu hg19 5 5469021 5469021 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . KIAA0947 NM_015325 exon15 c.A6142G p.K2048E ATTAATAAAGCAA . 87.0 27.0 99.0 0.0 . 301 . . . none . . PASS Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13894791 13894791 + Missense_Mutation SNP T T A novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . DNAH5 NM_001369 exon16 c.A2399T p.E800V TAAGCCTCAATAT . 66.0 16.0 103.0 0.0 . 868 . . . none . . PASS Atlas-SNP SPATS1 221409 hgsc.bcm.edu hg19 6 44320474 44320474 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . SPATS1 NM_145026 exon3 c.A151G p.S51G AATTGCAGTGATT . 99.0 32.0 46.0 0.0 . 61 . . . none . . PASS Atlas-SNP SLC35A1 10559 hgsc.bcm.edu hg19 6 88187175 88187175 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . SLC35A1 NM_006416 exon2 c.G112T p.D38Y ACATCAGACAAAG . 88.0 41.0 79.0 0.0 . 29 . . . none . . PASS Atlas-SNP NRCAM 4897 hgsc.bcm.edu hg19 7 107823350 107823350 + Silent SNP G G A novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . NRCAM NM_001037132 exon20 c.C2319T p.F773F AGATTCGAAACCA . 120.0 31.0 94.0 0.0 . 267 . . . none . . PASS Atlas-SNP FBXO16 157574 hgsc.bcm.edu hg19 8 28331306 28331306 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . FBXO16 NM_172366 exon3 c.G118A p.A40T GCAGGGCTCTTCT . 257.0 80.0 206.0 0.0 . 29 . . . none . . PASS Atlas-SNP CCL27 10850 hgsc.bcm.edu hg19 9 34662362 34662362 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . CCL27 NM_006664 exon2 c.C122T p.P41L GAGAGTGGCTTTC . 62.0 20.0 60.0 0.0 . 6 . . . none . . PASS Atlas-SNP ASAH2 56624 hgsc.bcm.edu hg19 10 52003053 52003053 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . ASAH2 NM_019893 exon3 c.G419A p.R140H AAGGCACGACTGT . 62.0 22.0 94.0 0.0 . 69 . . . none . . PASS Atlas-SNP PDZD7 79955 hgsc.bcm.edu hg19 10 102770293 102770293 + Missense_Mutation SNP T T G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . PDZD7 NM_001195263 exon15 c.A2353C p.S785R CCCGGCTGCTGCG . 409.0 18.0 356.0 0.0 . 101 . . . none . . PASS Atlas-SNP PPRC1 23082 hgsc.bcm.edu hg19 10 103900243 103900243 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . PPRC1 NM_015062 exon5 c.C1978T p.P660S GCTGTCCCGTCTG . 64.0 27.0 47.0 0.0 . 151 . . . none . . PASS Atlas-SNP OR51B5 282763 hgsc.bcm.edu hg19 11 5364556 5364556 + Missense_Mutation SNP T T G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . OR51B5 NM_001005567 exon5 c.A199C p.T67P GGTCTGTGGCAGC . 54.0 7.0 41.0 0.0 . 60 . . . none . . PASS Atlas-SNP OR51B5 282763 hgsc.bcm.edu hg19 11 5364558 5364558 + Missense_Mutation SNP G G C novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . OR51B5 NM_001005567 exon5 c.C197G p.A66G TCTGTGGCAGCCA . 57.0 8.0 41.0 0.0 . 60 . . . none . . PASS Atlas-SNP SPDYC 387778 hgsc.bcm.edu hg19 11 64940189 64940189 + Missense_Mutation SNP C C A novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . SPDYC NM_001008778 exon6 c.C551A p.T184N CTTGGACTCGGGA . 41.0 13.0 18.0 0.0 . 31 . . . none . . PASS Atlas-SNP SPTBN2 6712 hgsc.bcm.edu hg19 11 66472844 66472844 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b SPTBN2,NS,carcinoma,0,1 SPTBN2 NM_006946 exon14 c.G1903A p.A635T GCCGGGCCCGCCG . 84.0 31.0 92.0 0.0 . 188 . . . none . . PASS Atlas-SNP FKBP4 2288 hgsc.bcm.edu hg19 12 2907930 2907930 + Missense_Mutation SNP T T C novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . FKBP4 NM_002014 exon4 c.T452C p.I151T GAATCATTCGCAG . 125.0 31.0 86.0 0.0 . 29 . . . none . . PASS Atlas-SNP ITPR2 3709 hgsc.bcm.edu hg19 12 26572030 26572030 + Silent SNP C C A novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . ITPR2 NM_002223 exon50 c.G7062T p.L2354L GCAAACCAGGACA . 125.0 6.0 109.0 0.0 . 270 . . . none . . PASS Atlas-SNP AMIGO2 347902 hgsc.bcm.edu hg19 12 47471993 47471993 + Missense_Mutation SNP C C G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . AMIGO2 NM_181847 exon2 c.G793C p.D265H TGGAGTCAGACCA . 125.0 34.0 135.0 0.0 . 50 . . . none . . PASS Atlas-SNP KRT3 3850 hgsc.bcm.edu hg19 12 53183951 53183951 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b KRT3,rectum,carcinoma,0,2 KRT3 NM_057088 exon9 c.G1762A p.G588S CAAAGCCGCTGCC . 116.0 18.0 93.0 0.0 . 65 . . . none . . PASS Atlas-SNP KRT3 3850 hgsc.bcm.edu hg19 12 53183979 53183979 + Silent SNP G G A novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . KRT3 NM_057088 exon9 c.C1734T p.G578G GCTGCCGCCGCCA . 123.0 15.0 106.0 0.0 . 65 . . . none . . PASS Atlas-SNP PPP1R12A 4659 hgsc.bcm.edu hg19 12 80214604 80214604 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . PPP1R12A NM_002480 exon8 c.G1064A p.C355Y CTAGAGCAGCTAG . 48.0 12.0 36.0 0.0 . 76 . . . none . . PASS Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112654883 112654883 + Silent SNP C C T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . . NM_001109662 exon46 c.G6789A p.L2263L CCGGGGCAGGCCT . 345.0 144.0 250.0 1.0 . . . . . none . . PASS Atlas-SNP LPAR6 10161 hgsc.bcm.edu hg19 13 48986185 48986185 + Missense_Mutation SNP C C G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . LPAR6 NM_001162497 exon5 c.G375C p.K125N TAGAGTCTTTGAC . 60.0 23.0 38.0 0.0 . 38 . . . none . . PASS Atlas-SNP GALNT16 57452 hgsc.bcm.edu hg19 14 69792741 69792741 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . GALNT16 NM_001168368 exon5 c.G565A p.E189K CGGCGGGAAGGTG . 54.0 15.0 64.0 0.0 . 8 . . . none . . PASS Atlas-SNP RPS6KA5 9252 hgsc.bcm.edu hg19 14 91389482 91389482 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b RPS6KA5_ENST00000261991,NS,carcinoma,0,1 RPS6KA5 NM_182398 exon6 c.G677A p.R226K CCCCCTCTGACAA . 69.0 22.0 78.0 0.0 . 135 . . . none . . PASS Atlas-SNP MTMR10 54893 hgsc.bcm.edu hg19 15 31253167 31253167 + Silent SNP C C G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . MTMR10 NM_017762 exon7 c.G675C p.S225S CCAATCCGAGTAA . 21.0 5.0 32.0 0.0 . 74 . . . none . . PASS Atlas-SNP NEDD4 4734 hgsc.bcm.edu hg19 15 56142779 56142779 + Silent SNP C C T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . NEDD4 NM_198400 exon7 c.G2349A p.R783R GAAAGGCCTCCCA . 137.0 55.0 110.0 0.0 . 167 . . . none . . PASS Atlas-SNP PARP6 56965 hgsc.bcm.edu hg19 15 72533806 72533806 + Missense_Mutation SNP T T G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . PARP6 NM_020214 exon23 c.A1883C p.Y628S TTTGTGTAAACCT . 45.0 14.0 60.0 0.0 . 44 . . . none . . PASS Atlas-SNP CACNA1H 8912 hgsc.bcm.edu hg19 16 1268646 1268646 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . CACNA1H NM_021098 exon33 c.C5882T p.P1961L GCACCCCCTTGGG . 109.0 29.0 65.0 0.0 . 317 . . . none . . PASS Atlas-SNP SETD6 79918 hgsc.bcm.edu hg19 16 58552019 58552019 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . SETD6 NM_001160305 exon6 c.G857T p.G286V CTTATGGGCAAAT . 106.0 5.0 129.0 0.0 . 27 . . . none . . PASS Atlas-SNP BCAR1 9564 hgsc.bcm.edu hg19 16 75263502 75263502 + Silent SNP A A T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . BCAR1 NM_001170714 exon8 c.T2658A p.P886P CGCGGAAGGCGAT . 69.0 28.0 74.0 0.0 . 184 . . . none . . PASS Atlas-SNP PHF12 57649 hgsc.bcm.edu hg19 17 27234650 27234650 + Nonsense_Mutation SNP A A T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . PHF12 NM_001033561 exon13 c.T2499A p.C833X GTAGTTACAGTGA . 59.0 11.0 57.0 0.0 . 69 . . . none . . PASS Atlas-SNP CACNA1G 8913 hgsc.bcm.edu hg19 17 48703733 48703733 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . CACNA1G NM_018896 exon38 c.A6755G p.Q2252R AGGCCCAGAGCTG . 129.0 31.0 71.0 0.0 . 659 . . . none . . PASS Atlas-SNP CHMP1B 57132 hgsc.bcm.edu hg19 18 11852058 11852058 + Missense_Mutation SNP C C A novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . CHMP1B NM_020412 exon1 c.C548A p.A183E CTTCGGCGGAGCA . 33.0 10.0 43.0 0.0 . 16 . . . none . . PASS Atlas-SNP TNPO2 30000 hgsc.bcm.edu hg19 19 12816354 12816354 + Silent SNP G G T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . TNPO2 NM_013433 exon16 c.C1815A p.V605V CTGGTAGACGGGC . 128.0 45.0 99.0 0.0 . 108 . . . none . . PASS Atlas-SNP PAK4 10298 hgsc.bcm.edu hg19 19 39663570 39663570 + Missense_Mutation SNP G G C novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . PAK4 NM_001014832 exon3 c.G217C p.G73R GTGCGGGGCAGCA . 122.0 45.0 130.0 0.0 . 40 . . . none . . PASS Atlas-SNP RABAC1 10567 hgsc.bcm.edu hg19 19 42463044 42463044 + Missense_Mutation SNP C C T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . RABAC1 NM_006423 exon2 c.G113A p.R38H GCGCGGCGCCGCT . 54.0 18.0 59.0 0.0 . 6 . . . none . . PASS Atlas-SNP C20orf26 26074 hgsc.bcm.edu hg19 20 20243776 20243776 + Splice_Site SNP T T A novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . C20orf26 NM_015585 exon21 c.2503+2T>A . AGAAGGTAAGGAT . 125.0 22.0 95.0 0.0 . 188 . . . none . . PASS Atlas-SNP SDC4 6385 hgsc.bcm.edu hg19 20 43964542 43964542 + Missense_Mutation SNP T T G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . SDC4 NM_002999 exon2 c.A79C p.I27L GGTCGATGACCTC . 39.0 26.0 4.0 0.0 . 16 . . . none . . PASS Atlas-SNP ZNF335 63925 hgsc.bcm.edu hg19 20 44588028 44588028 + Missense_Mutation SNP G G T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . ZNF335 NM_022095 exon15 c.C2065A p.H689N TCTTGTGCCGTGT . 76.0 23.0 86.0 0.0 . 115 . . . none . . PASS Atlas-SNP ARFRP1 10139 hgsc.bcm.edu hg19 20 62331971 62331971 + Silent SNP G G C novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . ARFRP1 NM_001134758 exon7 c.C501G p.A167A CGAGCAGGCCTGG . 64.0 18.0 51.0 0.0 . 17 . . . none . . PASS Atlas-SNP ZNRF3 84133 hgsc.bcm.edu hg19 22 29445610 29445610 + Missense_Mutation SNP G G A novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . ZNRF3 NM_001206998 exon8 c.G1441A p.E481K TACCCGGAGCAGG . 40.0 10.0 48.0 0.0 . 75 . . . none . . PASS Atlas-SNP ZMYM3 9203 hgsc.bcm.edu hg19 X 70472532 70472532 + Missense_Mutation SNP T T C novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . ZMYM3 NM_005096 exon2 c.A574G p.S192G AAGGGCTAGGCGG . 69.0 45.0 60.0 0.0 . 137 . . . none . . PASS Atlas-SNP HDAC8 55869 hgsc.bcm.edu hg19 X 71792527 71792527 + Missense_Mutation SNP C C G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . HDAC8 NM_018486 exon1 c.G85C p.D29H GGGAGTCACACAT . 40.0 23.0 93.0 0.0 . 18 . . . none . . PASS Atlas-SNP ND6 0 hgsc.bcm.edu hg19 MT 14387 14387 + Missense_Mutation SNP A A G novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . . ENST00000361681 exon1 c.T287C p.L96S ATCGCTAACCCCA . 28.0 26.0 11.0 0.0 . . . . . none . . PASS Atlas-SNP CD109 135228 hgsc.bcm.edu hg19 6 74502420 74502421 + Frame_Shift_Ins INS - - AC novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . CD109 NM_001159587 exon23 c.2773_2774insAC p.N925fs . . 40.0 14.0 70.0 0.0 . 170 . 0.35 0 none . . PASS Atlas-Indel,Pindel MUC5B 727897 hgsc.bcm.edu hg19 11 1272670 1272678 + In_Frame_Del DEL ATAGCCACC ATAGCCACC - novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 ATAGCCACC ATAGCCACC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . MUC5B NM_002458 exon31 c.14559_14567del p.4853_4856del . . 96.0 14.0 130.0 0.0 . 473 . 0.145833 0 none . . PASS Atlas-INDEL BEST1 7439 hgsc.bcm.edu hg19 11 61724395 61724396 + Frame_Shift_Ins INS - - T novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . BEST1 NM_004183 exon5 c.561_562insT p.W187fs . . 69.0 19.0 61.0 0.0 . 85 . 0.275362 0 none . . PASS Atlas-Indel,Pindel ZNF225 7768 hgsc.bcm.edu hg19 19 44635280 44635280 + Frame_Shift_Del DEL A A - novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . ZNF225 NM_013362 exon5 c.512delC p.S171X . . 89.0 11.0 75.0 0.0 . 41 . 0.123596 0 none . . PASS Atlas-Indel,Pindel LPO 4025 hgsc.bcm.edu hg19 17 56332255 56332255 + Frame_Shift_Del DEL C C - novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . LPO NM_006151 exon9 c.1188delA p.E396fs . . 81.0 38.0 107.0 0.0 . 73 . 0.469136 0 none . . PASS Atlas-Indel,Pindel MUC5B 727897 hgsc.bcm.edu hg19 11 1272664 1272668 + Frame_Shift_Del DEL AGCAC AGCAC - novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 AGCAC AGCAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . MUC5B NM_002458 exon31 c.14553_14557del p.4851_4853del . . 93.0 14.0 129.0 0.0 . 473 . 0.150538 0 none . . PASS Atlas-INDEL IGF1R 3480 hgsc.bcm.edu hg19 15 99500486 99500513 + Frame_Shift_Del DEL CCCTCGGCCTCCTCGTCCTCCCTGCCAC CCCTCGGCCTCCTCGTCCTCCCTGCCAC - novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 CCCTCGGCCTCCTCGTCCTCCCTGCCAC CCCTCGGCCTCCTCGTCCTCCCTGCCAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . IGF1R NM_000875 exon21 c.3918_3945del p.1306_1315del . . 71.0 13.0 96.0 0.0 . 147 . 0.183 . none . . PASS Pindel MUC5B 727897 hgsc.bcm.edu hg19 11 1272661 1272678 + In_Frame_Del DEL CCGAGCACTATAGCCACC CCGAGCACTATAGCCACC - novel TCGA-2Z-A9JM-01A-12D-A42J-10 TCGA-2Z-A9JM-10A-01D-A42M-10 CCGAGCACTATAGCCACC CCGAGCACTATAGCCACC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5f432901-8404-4499-ac42-e4560804eee8 db9c908a-91c7-4c8f-b608-39bc3e98d82b . MUC5B NM_002458 exon31 c.14550_14567del p.4850_4856del . . 96.0 15.0 136.0 0.0 . 473 . 0.156 . none . . PASS Pindel