Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm RAB42 115273 hgsc.bcm.edu hg19 1 28920237 28920237 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . RAB42 NM_001193532 exon2 c.G265T p.V89L AATGTGGTGGGTG . 27.0 19.0 44.0 0.0 . 10 . . . none . . PASS Atlas-SNP C1orf101 257044 hgsc.bcm.edu hg19 1 244662360 244662360 + Silent SNP G G A novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . C1orf101 NM_173807 exon7 c.G408A p.G136G GCTGGGGAATGCA . 316.0 133.0 372.0 0.0 . 158 . . . none . . PASS Atlas-SNP ERBB4 2066 hgsc.bcm.edu hg19 2 212578365 212578365 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . ERBB4 NM_001042599 exon8 c.G892A p.V298M CTACCACAAAGTT . 56.0 20.0 73.0 0.0 . 480 . . . none . . PASS Atlas-SNP CUL3 8452 hgsc.bcm.edu hg19 2 225378264 225378264 + Nonsense_Mutation SNP C C A novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . CUL3 NM_001257198 exon5 c.G649T p.E217X ACATTTCCAAAAA . 251.0 107.0 240.0 0.0 . 96 . . . none . . PASS Atlas-SNP NCBP2 22916 hgsc.bcm.edu hg19 3 196666228 196666228 + Missense_Mutation SNP T T C novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . NCBP2 NM_007362 exon2 c.A154G p.T52A CTTCAGTTGTGTA . 81.0 28.0 100.0 0.0 . 12 . . . none . . PASS Atlas-SNP STAP1 26228 hgsc.bcm.edu hg19 4 68424597 68424597 + Missense_Mutation SNP C C A novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . STAP1 NM_012108 exon1 c.C70A p.L24I ACTGCTCTACCTT . 93.0 31.0 127.0 0.0 . 46 . . . none . . PASS Atlas-SNP NAAA 27163 hgsc.bcm.edu hg19 4 76841890 76841890 + Splice_Site SNP C C G novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . NAAA NM_001042402 exon8 c.902+1G>C . AGCCTACCTCCGG . 150.0 67.0 220.0 0.0 . 26 . . . none . . PASS Atlas-SNP CLK4 57396 hgsc.bcm.edu hg19 5 178043950 178043950 + Splice_Site SNP C C G novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . CLK4 NM_020666 exon6 c.476-1G>C . TTTCATCTAGAGT . 232.0 73.0 276.0 0.0 . 103 . . . none . . PASS Atlas-SNP RXRB 6257 hgsc.bcm.edu hg19 6 33168099 33168099 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . RXRB NM_021976 exon1 c.C155T p.A52V GCCACCGCCGCCG . 83.0 4.0 120.0 0.0 . 34 . . . none . . PASS Atlas-SNP AP1S1 1174 hgsc.bcm.edu hg19 7 100802478 100802478 + Splice_Site SNP G G T novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . AP1S1 NM_001283 exon4 c.429+1G>T . CAAGAGGTACGGG . 27.0 7.0 51.0 0.0 . 22 . . . none . . PASS Atlas-SNP MAPK15 225689 hgsc.bcm.edu hg19 8 144803996 144803996 + Silent SNP G G T novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . MAPK15 NM_139021 exon13 c.G1404T p.L468L GGCCCTGATCCGG . 56.0 33.0 93.0 0.0 . 32 . . . none . . PASS Atlas-SNP RRAGA 10670 hgsc.bcm.edu hg19 9 19049688 19049688 + Missense_Mutation SNP C C A novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . RRAGA NM_006570 exon1 c.C31A p.L11M AAGGTGCTGCTGA . 127.0 50.0 164.0 0.0 . 17 . . . none . . PASS Atlas-SNP ZNF195 7748 hgsc.bcm.edu hg19 11 3380633 3380633 + Silent SNP G G T novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd ZNF195,NS,carcinoma,0,1 ZNF195 NM_001130520 exon6 c.C1605A p.S535S AAGGTTGGAGGAC . 90.0 4.0 99.0 0.0 . 77 . . . none . . PASS Atlas-SNP MS4A7 58475 hgsc.bcm.edu hg19 11 60156941 60156941 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . MS4A7 NM_021201 exon5 c.G418T p.V140L AGCATGGTAGCCC . 87.0 36.0 104.0 0.0 . 38 . . . none . . PASS Atlas-SNP DPF2 5977 hgsc.bcm.edu hg19 11 65108472 65108472 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . DPF2 NM_006268 exon3 c.C229T p.R77W CCTGCCCGGCGCT . 69.0 32.0 76.0 0.0 . 54 . . . none . . PASS Atlas-SNP ANKRD33 341405 hgsc.bcm.edu hg19 12 52282036 52282036 + Missense_Mutation SNP C C A novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd ANKRD33,colon,carcinoma,0,1 ANKRD33 NM_182608 exon1 c.C66A p.F22L GGCATTCGGAGAC . 100.0 47.0 124.0 0.0 . 33 . . . none . . PASS Atlas-SNP PSMB5 5693 hgsc.bcm.edu hg19 14 23502654 23502654 + Missense_Mutation SNP G G C novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . PSMB5 NM_001144932 exon2 c.C428G p.A143G ATGTTGGCAAGCA . 57.0 31.0 69.0 0.0 . 31 . . . none . . PASS Atlas-SNP WDR90 197335 hgsc.bcm.edu hg19 16 703789 703789 + Missense_Mutation SNP C C G novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . WDR90 NM_145294 exon13 c.C1423G p.H475D AAGGACCACCACG . 189.0 81.0 237.0 1.0 . 107 . . . none . . PASS Atlas-SNP SLX4 84464 hgsc.bcm.edu hg19 16 3656681 3656681 + Missense_Mutation SNP T T G novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . SLX4 NM_032444 exon3 c.A554C p.D185A TGGGAGTCGCTGT . 83.0 35.0 129.0 0.0 . 173 . . . none . . PASS Atlas-SNP SLC14A2 8170 hgsc.bcm.edu hg19 18 43252937 43252937 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . SLC14A2 NM_001242692 exon18 c.C2302T p.L768F ATCTTCCTCATAG . 74.0 22.0 73.0 0.0 . 121 . . . none . . PASS Atlas-SNP ZNF236 7776 hgsc.bcm.edu hg19 18 74637348 74637348 + Missense_Mutation SNP C C G novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . ZNF236 NM_007345 exon22 c.C3859G p.R1287G ATGACTCGAAGCT . 93.0 42.0 104.0 0.0 . 325 . . . none . . PASS Atlas-SNP DOT1L 84444 hgsc.bcm.edu hg19 19 2223434 2223434 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . DOT1L NM_032482 exon25 c.C3545T p.P1182L ACTCCCCACTCAC . 42.0 20.0 76.0 0.0 . 205 . . . none . . PASS Atlas-SNP RASGRP4 115727 hgsc.bcm.edu hg19 19 38905689 38905689 + Silent SNP G G A novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . RASGRP4 NM_170604 exon9 c.C1029T p.C343C ACCCGCGCAGCCA . 149.0 70.0 170.0 0.0 . 54 . . . none . . PASS Atlas-SNP DIAPH2 1730 hgsc.bcm.edu hg19 X 96171470 96171470 + Missense_Mutation SNP A A C novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . DIAPH2 NM_007309 exon8 c.A766C p.S256R GAAAGAAGTCTTT . 310.0 241.0 310.0 1.0 . 148 . . . none . . PASS Atlas-SNP GPRASP1 9737 hgsc.bcm.edu hg19 X 101910027 101910027 + Missense_Mutation SNP G G C novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . GPRASP1 NM_001099411 exon3 c.G1186C p.E396Q AAGCAAGAAGCCA . 66.0 57.0 64.0 0.0 . 140 . . . none . . PASS Atlas-SNP CUL3 8452 hgsc.bcm.edu hg19 2 225449664 225449664 + Frame_Shift_Del DEL A A - novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . CUL3 NM_001257197 exon1 c.64delC p.P22fs . . 107.0 37.0 138.0 0.0 . 96 . 0.345794 0 none . . PASS Atlas-Indel,Pindel CAMSAP2 23271 hgsc.bcm.edu hg19 1 200818453 200818453 + Frame_Shift_Del DEL A A - novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . . NM_203459 exon11 c.2555delC p.P852fs . . 294.0 124.0 361.0 0.0 . . . 0.421769 0 none . . PASS Atlas-Indel,Pindel NIPBL 25836 hgsc.bcm.edu hg19 5 36995727 36995743 + Frame_Shift_Del DEL GTATAGATCAATCAGTG GTATAGATCAATCAGTG - novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 GTATAGATCAATCAGTG GTATAGATCAATCAGTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . NIPBL NM_015384 exon11 c.3124_3140del p.1042_1047del . . 128.0 54.0 160.0 0.0 . 513 . 0.421875 0 none . . PASS Atlas-Indel,Pindel ZFYVE9 9372 hgsc.bcm.edu hg19 1 52769546 52769547 + Frame_Shift_Ins INS - - A novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . ZFYVE9 NM_004799 exon13 c.3387_3388insA p.D1129fs . . 109.0 48.0 173.0 0.0 . 131 . 0.440367 0 none . . PASS Atlas-Indel,Pindel TTYH3 80727 hgsc.bcm.edu hg19 7 2696131 2696132 + Frame_Shift_Ins INS - - TCGT novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . TTYH3 NM_025250 exon11 c.1213_1214insTCGT p.I405fs . . 30.0 11.0 38.0 0.0 . 36 . 0.366667 0 none . . PASS Atlas-Indel,Pindel OC90 729330 hgsc.bcm.edu hg19 8 133044287 133044287 + Frame_Shift_Del DEL A A - novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd OC90_ENST00000262283,NS,carcinoma,0,2 OC90 NM_001080399 exon12 c.873delC p.F291fs . . 85.0 45.0 96.0 0.0 . 163 . 0.529412 0 none . . PASS Atlas-Indel,Pindel FAM110C 642273 hgsc.bcm.edu hg19 2 46002 46003 + Frame_Shift_Ins INS - - T novel TCGA-2Z-A9J8-01A-11D-A42J-10 TCGA-2Z-A9J8-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb146a7-7274-4738-9b83-05c82018a495 a106d5a1-9938-4c4f-aec9-6163033a57bd . FAM110C NM_001077710 exon1 c.384_385insA p.Q128fs . . 47.0 19.0 66.0 0.0 . 11 . 0.404255 0 none . . PASS Atlas-Indel,Pindel