Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm S100PBP 64766 hgsc.bcm.edu hg19 1 33292095 33292095 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . S100PBP NM_001256121 exon3 c.C395T p.P132L CTAAACCATTAAA . 191.0 32.0 169.0 0.0 . 31 . . . none . . PASS Atlas-SNP CDC20 991 hgsc.bcm.edu hg19 1 43825898 43825898 + Silent SNP A A G novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . CDC20 NM_001255 exon6 c.A591G p.V197V GAATGTACTGGCC . 100.0 50.0 80.0 0.0 . 34 . . . none . . PASS Atlas-SNP PTGER3 5733 hgsc.bcm.edu hg19 1 71512615 71512615 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . PTGER3 NM_001126044 exon1 c.G646A p.G216S CGTTGCCCCCTCG . 137.0 42.0 90.0 0.0 . 246 . . . none . . PASS Atlas-SNP FUBP1 8880 hgsc.bcm.edu hg19 1 78432739 78432739 + Nonsense_Mutation SNP C C A novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . FUBP1 NM_003902 exon5 c.G337T p.G113X TGAATCCAACCAT . 175.0 81.0 179.0 0.0 . 112 . . . none . . PASS Atlas-SNP CDC42BPA 8476 hgsc.bcm.edu hg19 1 227268711 227268711 + Missense_Mutation SNP G G C novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . CDC42BPA NM_003607 exon17 c.C2363G p.T788S TACAAAGTAGTAA . 82.0 40.0 78.0 0.0 . 528 . . . none . . PASS Atlas-SNP TRAPPC12 51112 hgsc.bcm.edu hg19 2 3392180 3392180 + Silent SNP C C G novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . . NM_016030 exon2 c.C786G p.P262P CGAACCCGTGGCC . 127.0 55.0 111.0 0.0 . . . . . none . . PASS Atlas-SNP EGR4 1961 hgsc.bcm.edu hg19 2 73519561 73519561 + Missense_Mutation SNP G G C novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . EGR4 NM_001965 exon2 c.C794G p.S265W CAAGGCGAGGCCT . 106.0 50.0 105.0 0.0 . 52 . . . none . . PASS Atlas-SNP SPEG 10290 hgsc.bcm.edu hg19 2 220299815 220299815 + Missense_Mutation SNP T T C novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe SPEG,brain,glioma,0,1 SPEG NM_005876 exon1 c.T116C p.V39A TGGCCGTGGCCGG . 9.0 4.0 4.0 2.0 . 272 . . . none . . PASS Atlas-SNP PET112 5188 hgsc.bcm.edu hg19 4 152622569 152622569 + Missense_Mutation SNP C C A rs199827552 alternate_allele TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . PET112 NM_004564 exon9 c.G1109T p.R370L GTCTCCCGAATCT . 122.0 58.0 86.0 0.0 . 43 . . . alt C|0.999;T|0.001 . PASS Atlas-SNP ZNF622 90441 hgsc.bcm.edu hg19 5 16465654 16465654 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . ZNF622 NM_033414 exon1 c.C121T p.P41S TCACTGGGGCCAT . 128.0 54.0 137.0 0.0 . 49 . . . none . . PASS Atlas-SNP PPAP2A 8611 hgsc.bcm.edu hg19 5 54771139 54771139 + Silent SNP G G A novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . PPAP2A NM_003711 exon2 c.C198T p.F66F AATACTGAATGGA . 113.0 50.0 134.0 0.0 . 42 . . . none . . PASS Atlas-SNP CMYA5 202333 hgsc.bcm.edu hg19 5 79033639 79033639 + Silent SNP A A G novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . CMYA5 NM_153610 exon2 c.A9051G p.K3017K ATTGAAAGAAAAT . 396.0 189.0 318.0 0.0 . 643 . . . none . . PASS Atlas-SNP PCDHGC4 56098 hgsc.bcm.edu hg19 5 140865299 140865299 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . PCDHGC4 NM_018928 exon1 c.G559A p.D187N CGCAGCGACGGCA . 76.0 44.0 67.0 0.0 . 91 . . . none . . PASS Atlas-SNP JAKMIP2 9832 hgsc.bcm.edu hg19 5 147028036 147028036 + Missense_Mutation SNP T T A novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . JAKMIP2 NM_001270941 exon5 c.A839T p.D280V CGCAAATCCTACA . 71.0 30.0 89.0 0.0 . 154 . . . none . . PASS Atlas-SNP PEX6 5190 hgsc.bcm.edu hg19 6 42946507 42946507 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . PEX6 NM_000287 exon1 c.G382A p.G128R TCTCTCCGCGCCT . 25.0 14.0 16.0 0.0 . 44 . . . none . . PASS Atlas-SNP MICAL1 64780 hgsc.bcm.edu hg19 6 109771667 109771667 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . MICAL1 NM_022765 exon8 c.C1027A p.H343N TGCCATGGGTGGC . 114.0 5.0 130.0 0.0 . 79 . . . none . . PASS Atlas-SNP ITGB8 3696 hgsc.bcm.edu hg19 7 20403321 20403321 + Silent SNP A A G novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . ITGB8 NM_002214 exon2 c.A189G p.P63P GGGTCCAGAATGT . 136.0 36.0 64.0 0.0 . 159 . . . none . . PASS Atlas-SNP KLHL7 55975 hgsc.bcm.edu hg19 7 23145688 23145688 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . KLHL7 NM_001172428 exon1 c.G43A p.E15K AAGACCGAGAAGA . 160.0 41.0 82.0 0.0 . 102 . . . none . . PASS Atlas-SNP GRM3 2913 hgsc.bcm.edu hg19 7 86469144 86469144 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . GRM3 NM_000840 exon4 c.G2314A p.G772S TTCATAGGTTTTA . 183.0 35.0 74.0 0.0 . 237 . . . none . . PASS Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100681533 100681533 + Missense_Mutation SNP C C A novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . MUC17 NM_001040105 exon3 c.C6836A p.T2279N GAACGACTCCATT . 217.0 10.0 94.0 0.0 . 804 . . . none . . PASS Atlas-SNP CUL1 8454 hgsc.bcm.edu hg19 7 148484199 148484199 + Missense_Mutation SNP T T G novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . CUL1 NM_003592 exon13 c.T1466G p.I489S GCATGATCTCCAA . 155.0 53.0 58.0 0.0 . 80 . . . none . . PASS Atlas-SNP OPLAH 26873 hgsc.bcm.edu hg19 8 145112996 145112996 + Silent SNP G G A novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . OPLAH NM_017570 exon8 c.C1005T p.A335A TGTGCTGGCCTCG . 169.0 80.0 156.0 0.0 . 78 . . . none . . PASS Atlas-SNP PTPRD 5789 hgsc.bcm.edu hg19 9 8486309 8486309 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe PTPRD,leg,malignant_melanoma,0,1 PTPRD NM_002839 exon28 c.G2508A p.M836I AGTATTCATCTGA . 75.0 36.0 98.0 1.0 . 1348 . . . none . . PASS Atlas-SNP CACNA1B 774 hgsc.bcm.edu hg19 9 140904505 140904505 + Silent SNP G G C novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . CACNA1B NM_001243812 exon17 c.G2136C p.L712L CAACCTGGCCAAC . 100.0 43.0 108.0 0.0 . 266 . . . none . . PASS Atlas-SNP CACNA1B 774 hgsc.bcm.edu hg19 9 140918184 140918184 + Missense_Mutation SNP A A G novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . CACNA1B NM_001243812 exon19 c.A2989G p.T997A GAGACCACGGAGA . 191.0 24.0 0.0 0.0 . 266 . . . none . . PASS Atlas-SNP CACNA1B 774 hgsc.bcm.edu hg19 9 140918185 140918185 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . CACNA1B NM_001243812 exon19 c.C2990T p.T997M AGACCACGGAGAA . 189.0 30.0 0.0 0.0 . 266 . . . none . . PASS Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 16967343 16967343 + Silent SNP T T C novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . CUBN NM_001081 exon43 c.A6543G p.S2181S AGTTGATGAAGCA . 350.0 165.0 319.0 1.0 . 515 . . . none . . PASS Atlas-SNP PDZD7 79955 hgsc.bcm.edu hg19 10 102770293 102770293 + Missense_Mutation SNP T T G novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . PDZD7 NM_001195263 exon15 c.A2353C p.S785R CCCGGCTGCTGCG . 386.0 21.0 365.0 0.0 . 101 . . . none . . PASS Atlas-SNP ADD3 120 hgsc.bcm.edu hg19 10 111884029 111884029 + Silent SNP C C T novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . ADD3 NM_001121 exon10 c.C1398T p.I466I CAAAATCACGGTA . 193.0 96.0 155.0 0.0 . 89 . . . none . . PASS Atlas-SNP SAA2-SAA4 100528017 hgsc.bcm.edu hg19 11 18254055 18254055 + Silent SNP A A G novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . . NM_001199744 exon5 c.T351C p.Y117Y GTCCCAATAGGCT . 108.0 48.0 101.0 0.0 . . . . . none . . PASS Atlas-SNP BRCA2 675 hgsc.bcm.edu hg19 13 32910939 32910939 + Missense_Mutation SNP A A G novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . BRCA2 NM_000059 exon11 c.A2447G p.E816G CCATGGAAAAGAA . 306.0 146.0 271.0 0.0 . 812 . . . none . . PASS Atlas-SNP HOMEZ 57594 hgsc.bcm.edu hg19 14 23744832 23744832 + Silent SNP C C T novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . HOMEZ NM_020834 exon2 c.G1605A p.E535E TTCCTCCTCCTCC . 68.0 9.0 29.0 0.0 . 80 . . . none . . PASS Atlas-SNP MFAP1 4236 hgsc.bcm.edu hg19 15 44106734 44106734 + Silent SNP C C T novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . MFAP1 NM_005926 exon4 c.G582A p.E194E CTCCATCTCATCT . 81.0 33.0 80.0 0.0 . 36 . . . none . . PASS Atlas-SNP LCTL 197021 hgsc.bcm.edu hg19 15 66856303 66856303 + Missense_Mutation SNP T T A novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . LCTL NM_207338 exon3 c.A316T p.N106Y AGTGGTTGACGTG . 78.0 40.0 89.0 0.0 . 73 . . . none . . PASS Atlas-SNP CDH13 1012 hgsc.bcm.edu hg19 16 83378492 83378492 + Missense_Mutation SNP A A G rs374048975 bycluster TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . CDH13 NM_001220488 exon7 c.A803G p.N268S ATGTCAATGGCAA . 81.0 33.0 71.0 0.0 . 97 . . . weak . . PASS Atlas-SNP ACSF3 197322 hgsc.bcm.edu hg19 16 89167635 89167635 + Silent SNP G G T novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . ACSF3 NM_174917 exon3 c.G546T p.P182P GGAACCGGCAGAG . 76.0 40.0 102.0 0.0 . 40 . . . none . . PASS Atlas-SNP MPRIP 23164 hgsc.bcm.edu hg19 17 17039564 17039564 + Missense_Mutation SNP G G C novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . MPRIP NM_015134 exon6 c.G536C p.S179T TTACCAGCAGCAG . 102.0 9.0 64.0 0.0 . 87 . . . none . . PASS Atlas-SNP ATP5G1 516 hgsc.bcm.edu hg19 17 46973049 46973049 + Missense_Mutation SNP A A C novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . ATP5G1 NM_005175 exon5 c.A329C p.Y110S TCTCCTATGCCAT . 76.0 22.0 37.0 0.0 . 7 . . . none . . PASS Atlas-SNP CLTC 1213 hgsc.bcm.edu hg19 17 57742269 57742269 + Missense_Mutation SNP A A G novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . CLTC NM_004859 exon10 c.A1643G p.Q548R TCACACAGGTAAT . 98.0 26.0 66.0 0.0 . 124 . . . none . . PASS Atlas-SNP USP36 57602 hgsc.bcm.edu hg19 17 76803450 76803450 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . USP36 NM_025090 exon14 c.C1676T p.S559L CTATTCGAGTTGC . 186.0 54.0 99.0 0.0 . 243 . . . none . . PASS Atlas-SNP ZNF180 7733 hgsc.bcm.edu hg19 19 44988631 44988631 + Missense_Mutation SNP G G C novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe ZNF180,NS,carcinoma,0,1 ZNF180 NM_013256 exon3 c.C148G p.Q50E TCTCTTGAGGAAG . 68.0 27.0 75.0 0.0 . 103 . . . none . . PASS Atlas-SNP UQCR10 29796 hgsc.bcm.edu hg19 22 30163499 30163499 + Nonsense_Mutation SNP C C T rs377432442 alternate_allele TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe UQCR10,NS,carcinoma,0,1 UQCR10 NM_001003684 exon1 c.C112T p.Q38X TTCGATCAAGGCG . 75.0 35.0 63.0 0.0 . 10 . . . alt . . PASS Atlas-SNP PLCXD1 55344 hgsc.bcm.edu hg19 X 205414 205414 + Missense_Mutation SNP A A C novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . PLCXD1 NM_018390 exon3 c.A142C p.M48L GACACGATGACGT . 176.0 163.0 281.0 0.0 . 18 . . . none . . PASS Atlas-SNP NRK 203447 hgsc.bcm.edu hg19 X 105179166 105179166 + Nonsense_Mutation SNP C C A rs56273831 alternate_allele TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . NRK NM_198465 exon21 c.C3504A p.Y1168X AGTATACGCTGGA . 58.0 56.0 64.0 0.0 . 321 . . . alt . . PASS Atlas-SNP PLK3 1263 hgsc.bcm.edu hg19 1 45266511 45266511 + Splice_Site DEL G G - novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . PLK3 NM_004073 exon2 c.211-2G>- . . . 69.0 34.0 90.0 0.0 . 41 . 0.492754 0 none . . PASS Atlas-Indel,Pindel CFDP1 10428 hgsc.bcm.edu hg19 16 75327931 75327951 + Frame_Shift_Del DEL TTCAATGTACCTAGAAGATGA TTCAATGTACCTAGAAGATGA - novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 TTCAATGTACCTAGAAGATGA TTCAATGTACCTAGAAGATGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . CFDP1 NM_006324 exon7 c.810_820del p.270_274del . . 52.0 11.0 66.0 0.0 . 17 . 0.211538 0 none . . PASS Atlas-Indel,Pindel KRTAP5-9 3846 hgsc.bcm.edu hg19 11 71259971 71260114 + In_Frame_Del DEL TCAGGCTGTGGGTCATCCTGCTGCCAGTGCAGCTGCTGCAAGCCCTACTGCTCCCAGTGCAGCTGCTGTAAGCCCTGTTGCTCCTCCTCGGGTCGTGGGTCATCCTGCTGCCAATCCAGCTGCTGCAAGCCCTGCTGCTCATCC TCAGGCTGTGGGTCATCCTGCTGCCAGTGCAGCTGCTGCAAGCCCTACTGCTCCCAGTGCAGCTGCTGTAAGCCCTGTTGCTCCTCCTCGGGTCGTGGGTCATCCTGCTGCCAATCCAGCTGCTGCAAGCCCTGCTGCTCATCC - novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 TCAGGCTGTGGGTCATCCTGCTGCCAGTGCAGCTGCTGCAAGCCCTACTGCTCCCAGTGCAGCTGCTGTAAGCCCTGTTGCTCCTCCTCGGGTCGTGGGTCATCCTGCTGCCAATCCAGCTGCTGCAAGCCCTGCTGCTCATCC TCAGGCTGTGGGTCATCCTGCTGCCAGTGCAGCTGCTGCAAGCCCTACTGCTCCCAGTGCAGCTGCTGTAAGCCCTGTTGCTCCTCCTCGGGTCGTGGGTCATCCTGCTGCCAATCCAGCTGCTGCAAGCCCTGCTGCTCATCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . KRTAP5-9 NM_005553 exon1 c.267_410del p.89_137del . . 85.0 16.0 91.0 0.0 . 19 . 0.188 . none . . PASS Pindel LILRB1 10859 hgsc.bcm.edu hg19 19 55148104 55148105 + Frame_Shift_Del DEL GT GT - novel TCGA-2Z-A9J7-01A-11D-A382-10 TCGA-2Z-A9J7-10A-01D-A385-10 GT GT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f706942e-5a4c-4299-bbb2-7da02d8f774d 29721c4c-1077-4ae3-9583-4d7cd96257fe . LILRB1 NM_001081637 exon14 c.1812_1812del p.604_604del . . 103.0 12.0 104.0 0.0 . 140 . 0.117 . none . . PASS Pindel