Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PRAMEF1	65121	hgsc.bcm.edu	hg19	1	12854459	12854459	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	PRAMEF1	NM_023013	exon3	c.T683G	p.L228R	GTTACCTGAAGGA	.	209.0	51.0	211.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
RHCE	6006	hgsc.bcm.edu	hg19	1	25718532	25718532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	RHCE	NM_138618	exon4	c.A587G	p.E196G	TTATCCTCCGTTC	.	196.0	68.0	160.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
AIM1L	55057	hgsc.bcm.edu	hg19	1	26665868	26665868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	AIM1L	NM_001039775	exon6	c.A3257G	p.E1086G	ACTTGCTCCCCCT	.	93.0	4.0	80.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
ARID1A	8289	hgsc.bcm.edu	hg19	1	27056349	27056349	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ARID1A	NM_006015	exon2	c.C1345T	p.Q449X	TATACACAGCAGG	.	241.0	66.0	216.0	0.0	.	842	.	.	.	none	.	.	PASS	Atlas-SNP
AGL	178	hgsc.bcm.edu	hg19	1	100340327	100340327	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	AGL	NM_000644	exon8	c.T1043A	p.V348E	GTACTGTAGATAT	.	106.0	19.0	100.0	0.0	.	137	.	.	.	none	.	.	PASS	Atlas-SNP
RPTN	126638	hgsc.bcm.edu	hg19	1	152128604	152128604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	RPTN	NM_001122965	exon3	c.G971A	p.R324K	CCTTGTCTGTCCG	.	152.0	41.0	109.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
DHX9	1660	hgsc.bcm.edu	hg19	1	182828229	182828229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	DHX9	NM_001357	exon11	c.G1117A	p.E373K	CAGTTGGAACAGG	.	93.0	33.0	94.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
CR1	1378	hgsc.bcm.edu	hg19	1	207782641	207782641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	CR1	NM_000651	exon37	c.C5903T	p.S1968F	TCATATCTTGTGA	.	71.0	20.0	65.0	0.0	.	354	.	.	.	none	.	.	PASS	Atlas-SNP
HSD11B1	3290	hgsc.bcm.edu	hg19	1	209907854	209907854	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	HSD11B1	NM_001206741	exon7	c.C867T	p.F289F	CAGATTCATAAAC	.	49.0	19.0	52.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228506775	228506775	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	OBSCN	NM_001271223	exon65	c.G17193A	p.E5731E	ACAGGAGGCAGAG	.	139.0	47.0	135.0	0.0	.	2142	.	.	.	none	.	.	PASS	Atlas-SNP
PLD5	200150	hgsc.bcm.edu	hg19	1	242383316	242383316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	PLD5_ENST00000536534,bladder,carcinoma,0,2	PLD5	NM_152666	exon6	c.G709T	p.G237C	CCAAACCGGCACT	.	138.0	24.0	103.0	0.0	.	216	.	.	.	none	.	.	PASS	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32631577	32631577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	BIRC6	NM_016252	exon9	c.C1429A	p.L477M	GATTTACTGGAGG	.	278.0	121.0	185.0	0.0	.	838	.	.	.	none	.	.	PASS	Atlas-SNP
ELMOD3	84173	hgsc.bcm.edu	hg19	2	85617285	85617285	+	Silent	SNP	C	C	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ELMOD3	NM_001135022	exon13	c.C840A	p.V280V	GAAGGTCATCCCC	.	175.0	28.0	90.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
FOXD4L1	200350	hgsc.bcm.edu	hg19	2	114257882	114257882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	FOXD4L1	NM_012184	exon1	c.G1049A	p.S350N	CGTGGAGCTACTG	.	197.0	75.0	165.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
TUBA3D	113457	hgsc.bcm.edu	hg19	2	132240242	132240242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	TUBA3D	NM_080386	exon5	c.G1174A	p.D392N	CGCCTGGACCATA	.	161.0	58.0	127.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
CDK15	65061	hgsc.bcm.edu	hg19	2	202698681	202698681	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	CDK15	NM_001261435	exon7	c.A717G	p.K239K	GCTCAAACTGGCT	.	111.0	19.0	76.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
PLXNB1	5364	hgsc.bcm.edu	hg19	3	48464321	48464321	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	PLXNB1	NM_001130082	exon4	c.C1143T	p.H381H	GGGCGTGTGGTCT	.	188.0	54.0	124.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77617480	77617480	+	Silent	SNP	A	A	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ROBO2	NM_002942	exon13	c.A1866T	p.A622A	ACCAGCACAAGGA	.	106.0	19.0	79.0	0.0	.	527	.	.	.	none	.	.	PASS	Atlas-SNP
CHMP2B	25978	hgsc.bcm.edu	hg19	3	87299049	87299049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	CHMP2B	NM_014043	exon4	c.A346G	p.M116V	AAGAAGATGGATC	.	679.0	141.0	445.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
SEMA5B	54437	hgsc.bcm.edu	hg19	3	122647427	122647427	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	SEMA5B	NM_001256347	exon7	c.C735T	p.V245V	GCCGGCGACGATC	.	208.0	92.0	149.0	0.0	.	303	.	.	.	none	.	.	PASS	Atlas-SNP
SLC7A14	57709	hgsc.bcm.edu	hg19	3	170244552	170244552	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	SLC7A14	NM_020949	exon2	c.C174T	p.L58L	AGAGATGAGGTCC	.	147.0	57.0	84.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
CC2D2A	57545	hgsc.bcm.edu	hg19	4	15482437	15482437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	CC2D2A	NM_001080522	exon5	c.G233A	p.R78Q	CAGTCCGGAGAGG	.	285.0	78.0	247.0	0.0	.	158	.	.	.	none	.	.	PASS	Atlas-SNP
FAM105B	90268	hgsc.bcm.edu	hg19	5	14687708	14687708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	FAM105B	NM_138348	exon5	c.G547A	p.D183N	AATGAGGACCTGG	.	95.0	28.0	82.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
C5orf42	65250	hgsc.bcm.edu	hg19	5	37184927	37184927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	C5orf42	NM_023073	exon25	c.T4444C	p.S1482P	CAACCGACAAAGC	.	93.0	20.0	63.0	0.0	.	422	.	.	.	none	.	.	PASS	Atlas-SNP
AGGF1	55109	hgsc.bcm.edu	hg19	5	76332530	76332530	+	Silent	SNP	T	T	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	AGGF1	NM_018046	exon4	c.T666G	p.G222G	CACTGGTTTCTAT	.	82.0	4.0	72.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
APC	324	hgsc.bcm.edu	hg19	5	112174167	112174167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	APC	NM_001127510	exon17	c.C2876A	p.S959Y	AGAGATCTTCAAA	.	147.0	43.0	127.0	0.0	.	4158	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHAC1	56135	hgsc.bcm.edu	hg19	5	140306623	140306623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	PCDHAC1	NM_031882	exon1	c.C146A	p.A49D	CGGCCGCTATGTC	.	45.0	18.0	41.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
BAI3	577	hgsc.bcm.edu	hg19	6	69646517	69646517	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	BAI3	NM_001704	exon5	c.C975G	p.H325Q	GACACACTGCAGC	.	130.0	27.0	91.0	0.0	.	451	.	.	.	none	.	.	PASS	Atlas-SNP
CEP57L1	285753	hgsc.bcm.edu	hg19	6	109480588	109480588	+	Silent	SNP	A	A	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	CEP57L1	NM_001271853	exon9	c.A939T	p.S313S	TGACTCAGAAAAG	.	243.0	58.0	197.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	hg19	7	2976750	2976750	+	Missense_Mutation	SNP	A	A	T	rs372864426	alternate_allele	TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	CARD11	NM_032415	exon9	c.T1262A	p.M421K	CGCACCATCTCGA	.	80.0	46.0	70.0	0.0	.	339	.	.	.	alt	.	.	PASS	Atlas-SNP
ADAM22	53616	hgsc.bcm.edu	hg19	7	87785232	87785232	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ADAM22	NM_021722	exon22	c.C1818T	p.T606T	GTGTACCAATATT	.	232.0	53.0	152.0	0.0	.	280	.	.	.	none	.	.	PASS	Atlas-SNP
PSMC2	5701	hgsc.bcm.edu	hg19	7	103008257	103008257	+	Splice_Site	SNP	G	G	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	PSMC2	NM_002803	exon11	c.1144+1G>T	.	GCACTGGTAAGTA	.	95.0	41.0	45.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
TNPO3	23534	hgsc.bcm.edu	hg19	7	128632137	128632137	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	TNPO3	NM_012470	exon10	c.C1274G	p.S425C	AGAGTAGAATATA	.	63.0	22.0	42.0	0.0	.	148	.	.	.	none	.	.	PASS	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	hg19	7	131815331	131815331	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	PLXNA4	NM_020911	exon32	c.C5592A	p.I1864I	TCCAAGGATCTGC	.	111.0	36.0	93.0	0.0	.	873	.	.	.	none	.	.	PASS	Atlas-SNP
CNOT4	4850	hgsc.bcm.edu	hg19	7	135078775	135078775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	CNOT4	NM_001190850	exon10	c.A1522G	p.I508V	GCATGATGCTATT	.	213.0	103.0	141.0	0.0	.	146	.	.	.	none	.	.	PASS	Atlas-SNP
ABCF2	10061	hgsc.bcm.edu	hg19	7	150915213	150915213	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ABCF2	NM_005692	exon11	c.C1292G	p.P431R	CCATTGGGCCCTA	.	112.0	55.0	75.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
TTI2	80185	hgsc.bcm.edu	hg19	8	33361326	33361326	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	.	NM_001265581	exon5	c.C1055G	p.P352R	TGCTCTGGCTCCA	.	80.0	28.0	74.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
RNF19A	25897	hgsc.bcm.edu	hg19	8	101273971	101273971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	RNF19A	NM_015435	exon9	c.T1481C	p.V494A	TCTGCTACTGATG	.	144.0	24.0	135.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139809070	139809070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	COL22A1	NM_152888	exon12	c.G1588A	p.G530S	TTTCACCCTTTTC	.	90.0	24.0	91.0	0.0	.	390	.	.	.	none	.	.	PASS	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139809071	139809071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	COL22A1	NM_152888	exon12	c.G1587T	p.K529N	TTCACCCTTTTCC	.	90.0	24.0	91.0	0.0	.	390	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC180	0	hgsc.bcm.edu	hg19	9	100124603	100124603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	.	NM_020893	exon28	c.C3914T	p.P1305L	GCTCACCTCCTGT	.	101.0	55.0	88.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ASTN2	23245	hgsc.bcm.edu	hg19	9	119976776	119976776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ASTN2	NM_014010	exon3	c.C876A	p.D292E	GTCATAGTCATCC	.	90.0	4.0	85.0	0.0	.	307	.	.	.	none	.	.	PASS	Atlas-SNP
TOR1B	27348	hgsc.bcm.edu	hg19	9	132565494	132565494	+	Missense_Mutation	SNP	G	G	T	rs375663995	alternate_allele	TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	TOR1B	NM_014506	exon1	c.G3T	p.M1I	CGGGATGTTGCGG	.	50.0	30.0	39.0	0.0	.	20	.	.	.	alt	.	.	PASS	Atlas-SNP
SETX	23064	hgsc.bcm.edu	hg19	9	135204944	135204944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	SETX	NM_015046	exon10	c.G2041A	p.D681N	GATGGTCCTCTAG	.	37.0	19.0	34.0	0.0	.	234	.	.	.	none	.	.	PASS	Atlas-SNP
CEL	1056	hgsc.bcm.edu	hg19	9	135946849	135946849	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	CEL	NM_001807	exon11	c.T1969G	p.S657A	GGTGACTCCGGGG	.	42.0	11.0	10.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1984	84960	hgsc.bcm.edu	hg19	9	139700623	139700623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	KIAA1984	NM_001039374	exon10	c.G1042A	p.A348T	CTGAAGGCCCTGG	.	78.0	40.0	55.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
ATP5C1	509	hgsc.bcm.edu	hg19	10	7841871	7841871	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ATP5C1	NM_001001973	exon5	c.A565T	p.K189X	TTTAATAAATTCA	.	39.0	12.0	38.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC7	221016	hgsc.bcm.edu	hg19	10	32760011	32760011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	CCDC7	NM_145023	exon7	c.T530A	p.L177H	AAACTCTTTTACA	.	202.0	59.0	147.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	hg19	10	37508184	37508184	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ANKRD30A	NM_052997	exon34	c.T3376C	p.L1126L	TCTAAATTGAAGG	.	260.0	82.0	165.0	0.0	.	448	.	.	.	none	.	.	PASS	Atlas-SNP
RHOBTB1	9886	hgsc.bcm.edu	hg19	10	62670721	62670721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	RHOBTB1	NM_014836	exon4	c.G220A	p.D74N	CTTCATCAACAAC	.	84.0	21.0	80.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
JMJD1C	221037	hgsc.bcm.edu	hg19	10	64968945	64968945	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	JMJD1C	NM_032776	exon9	c.T2745A	p.D915E	AATACCATCTGCT	.	114.0	36.0	99.0	0.0	.	347	.	.	.	none	.	.	PASS	Atlas-SNP
ZFYVE27	118813	hgsc.bcm.edu	hg19	10	99498260	99498260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ZFYVE27	NM_001002261	exon1	c.G26A	p.S9N	AGGGGAGTGGGCC	.	62.0	15.0	78.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
SEC23IP	11196	hgsc.bcm.edu	hg19	10	121663721	121663721	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	SEC23IP	NM_007190	exon4	c.T1033A	p.W345R	TGTACTTGGTTTT	.	164.0	38.0	125.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
ANO3	63982	hgsc.bcm.edu	hg19	11	26663544	26663544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ANO3	NM_031418	exon22	c.T2243C	p.L748P	TGAACCTTCATGG	.	79.0	17.0	82.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
PAMR1	25891	hgsc.bcm.edu	hg19	11	35457562	35457562	+	Missense_Mutation	SNP	T	T	C	rs147274037		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	PAMR1	NM_015430	exon10	c.A1273G	p.T425A	GCTGGGTATGCAG	.	206.0	57.0	153.0	0.0	.	85	.	.	.	weak	T|1.000;C|0.000	0.000	PASS	Atlas-SNP
GANAB	23193	hgsc.bcm.edu	hg19	11	62394377	62394377	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	GANAB	NM_198335	exon21	c.G2418A	p.K806K	ATGATGCTTCTGG	.	100.0	29.0	104.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
MUS81	80198	hgsc.bcm.edu	hg19	11	65628851	65628851	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	MUS81	NM_025128	exon3	c.A296T	p.E99V	CTGGAGAGAACAG	.	48.0	17.0	44.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
C11orf82	220042	hgsc.bcm.edu	hg19	11	82643420	82643420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	C11orf82	NM_145018	exon6	c.C1040T	p.P347L	GAGAGCCCCTTGA	.	71.0	19.0	94.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP20	57569	hgsc.bcm.edu	hg19	11	110451689	110451689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ARHGAP20	NM_020809	exon16	c.A1981G	p.N661D	AAATGTTCACCGG	.	86.0	17.0	93.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
FRS2	10818	hgsc.bcm.edu	hg19	12	69962872	69962872	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	FRS2	NM_001042555	exon6	c.T62G	p.F21C	ACAAGTTTAAGGT	.	125.0	59.0	85.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
MYO1H	283446	hgsc.bcm.edu	hg19	12	109858829	109858829	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	MYO1H	NM_001101421	exon15	c.A1593T	p.K531N	TCTGAAAGAAGTA	.	118.0	7.0	86.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
TSC22D1	8848	hgsc.bcm.edu	hg19	13	45008845	45008845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	TSC22D1	NM_183422	exon3	c.T3139C	p.S1047P	GGGGGGAGCCAGT	.	51.0	23.0	33.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
GPR183	1880	hgsc.bcm.edu	hg19	13	99947502	99947502	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	GPR183	NM_004951	exon2	c.A898C	p.N300H	AGCAATTGAAGTT	.	139.0	42.0	129.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64593109	64593109	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	SYNE2	NM_182914	exon72	c.T13619A	p.L4540H	TGACCCTCAGTCA	.	273.0	78.0	223.0	0.0	.	577	.	.	.	none	.	.	PASS	Atlas-SNP
YLPM1	56252	hgsc.bcm.edu	hg19	14	75276225	75276225	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	YLPM1	NM_019589	exon7	c.T4664G	p.L1555R	CACCTCTACCTCC	.	77.0	17.0	82.0	0.0	.	298	.	.	.	none	.	.	PASS	Atlas-SNP
SPPL2A	84888	hgsc.bcm.edu	hg19	15	51028376	51028376	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	SPPL2A	NM_032802	exon8	c.T854A	p.M285K	ACTTCCATGTTTT	.	56.0	13.0	65.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
FAM214A	56204	hgsc.bcm.edu	hg19	15	52901851	52901851	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	.	NM_019600	exon6	c.A1260G	p.K420K	TTTACCTTTTCCC	.	57.0	14.0	61.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
POLG	5428	hgsc.bcm.edu	hg19	15	89870191	89870191	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	POLG	NM_002693	exon8	c.T1537C	p.L513L	TGGGCAACTTGCT	.	70.0	23.0	67.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
TFAP4	7023	hgsc.bcm.edu	hg19	16	4311843	4311843	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	TFAP4	NM_003223	exon4	c.G462C	p.E154D	AATCATCTCCCGC	.	78.0	43.0	57.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
SOCS1	8651	hgsc.bcm.edu	hg19	16	11348785	11348785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	SOCS1	NM_003745	exon2	c.C551T	p.A184V	ACGGTGGCCACGA	.	188.0	47.0	99.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
SNX29	92017	hgsc.bcm.edu	hg19	16	12371799	12371799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	SNX29	NM_032167	exon15	c.T1688C	p.L563P	CAAATCTTTGGAG	.	134.0	31.0	95.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
CHRNE	1145	hgsc.bcm.edu	hg19	17	4802092	4802092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	CHRNE	NM_000080	exon12	c.T1421C	p.F474S	CCGAGGAAGATGA	.	83.0	7.0	82.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
ALKBH5	54890	hgsc.bcm.edu	hg19	17	18088203	18088203	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ALKBH5	NM_017758	exon1	c.G646C	p.V216L	CCCATCGTGTCCG	.	78.0	22.0	52.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
SLC47A1	55244	hgsc.bcm.edu	hg19	17	19459000	19459000	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	SLC47A1	NM_018242	exon8	c.G736T	p.G246X	ACATGGGGAGGTA	.	74.0	15.0	50.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
EZH1	2145	hgsc.bcm.edu	hg19	17	40870014	40870014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	EZH1,bladder,carcinoma,0,1	EZH1	NM_001991	exon10	c.A1003G	p.T335A	AGTCTGTGCCACA	.	114.0	44.0	84.0	1.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
IGF2BP1	10642	hgsc.bcm.edu	hg19	17	47075185	47075185	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	IGF2BP1	NM_001160423	exon1	c.G78A	p.K26K	GCACAAGATCTCC	.	119.0	26.0	77.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
AFG3L2	10939	hgsc.bcm.edu	hg19	18	12340242	12340242	+	Silent	SNP	A	A	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	AFG3L2	NM_006796	exon15	c.T1938G	p.A646A	ATCTTGAGCACCA	.	65.0	14.0	50.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
DAZAP1	26528	hgsc.bcm.edu	hg19	19	1434904	1434904	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	DAZAP1	NM_018959	exon12	c.G1217C	p.R406P	CCTACCGACGCTA	.	80.0	26.0	60.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	hg19	19	15292387	15292387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	NOTCH3	NM_000435	exon17	c.G2792A	p.S931N	GCCCACCTGGGGC	.	182.0	48.0	161.0	0.0	.	340	.	.	.	none	.	.	PASS	Atlas-SNP
IFI30	10437	hgsc.bcm.edu	hg19	19	18286479	18286479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	IFI30	NM_006332	exon4	c.T455C	p.F152S	AAGAGTTTGAGGA	.	67.0	22.0	46.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
SIGLEC10	89790	hgsc.bcm.edu	hg19	19	51920173	51920173	+	Silent	SNP	G	G	A	rs139091162		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	SIGLEC10	NM_001171157	exon3	c.C453T	p.P151P	GGTCTCGGGGATG	.	171.0	37.0	176.0	0.0	.	112	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
ZNF350	59348	hgsc.bcm.edu	hg19	19	52468148	52468148	+	Missense_Mutation	SNP	C	C	T	rs148220969		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	ZNF350,NS,carcinoma,0,1	ZNF350	NM_021632	exon5	c.G1558A	p.V520M	TGATCACGGAAGG	.	67.0	19.0	55.0	0.0	.	48	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
ZNF580	51157	hgsc.bcm.edu	hg19	19	56153876	56153876	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ZNF580	NM_016202	exon1	c.T2A	p.M1K	TCCAGATGCTGCT	.	57.0	17.0	61.0	0.0	.	2	.	.	.	none	.	.	PASS	Atlas-SNP
ZSCAN22	342945	hgsc.bcm.edu	hg19	19	58849868	58849868	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ZSCAN22	NM_181846	exon3	c.C652T	p.Q218X	ACAGACCAGCGTG	.	118.0	33.0	115.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
SDCBP2	27111	hgsc.bcm.edu	hg19	20	1294040	1294040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	SDCBP2	NM_080489	exon5	c.C328T	p.H110Y	ACAGGTGGATCTC	.	123.0	24.0	124.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
LRRN4	164312	hgsc.bcm.edu	hg19	20	6031523	6031523	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	LRRN4	NM_152611	exon3	c.C762T	p.N254N	CTGCAGGTTGGGG	.	138.0	36.0	116.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
C20orf112	140688	hgsc.bcm.edu	hg19	20	31044026	31044026	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	C20orf112	NM_001256798	exon6	c.G1014C	p.K338N	CGGGAGCTTGTCA	.	87.0	27.0	72.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF512B	57473	hgsc.bcm.edu	hg19	20	62595216	62595216	+	Missense_Mutation	SNP	C	C	T	rs370483162		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ZNF512B	NM_020713	exon9	c.G1531A	p.V511I	GGCAGACGGCTTC	.	42.0	10.0	34.0	0.0	.	72	.	.	.	weak	.	.	PASS	Atlas-SNP
MN1	4330	hgsc.bcm.edu	hg19	22	28194900	28194900	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	MN1	NM_002430	exon1	c.A1632G	p.Q544Q	CTGCTGTTGCTGT	.	57.0	7.0	26.0	0.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
CPT1B	1375	hgsc.bcm.edu	hg19	22	51009666	51009666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	CPT1B	NM_001145135	exon15	c.A1796G	p.E599G	CGTCCCTCCCGGA	.	50.0	17.0	35.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53565805	53565805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	HUWE1	NM_031407	exon76	c.C11869A	p.R3957S	CAAAGCGAAGGAA	.	37.0	21.0	25.0	0.0	.	724	.	.	.	none	.	.	PASS	Atlas-SNP
ND1	10625	hgsc.bcm.edu	hg19	MT	3760	3760	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	.	ENST00000361390	exon1	c.T454G	p.S152A	CTACTATCAACAT	.	26.0	8.0	16.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF549	256051	hgsc.bcm.edu	hg19	19	58049579	58049583	+	Frame_Shift_Del	DEL	TCACT	TCACT	-	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	TCACT	TCACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	ZNF549	NM_001199295	exon4	c.1206_1210del	p.402_404del	.	.	98.0	19.0	92.0	0.0	.	118	.	0.193878	0	none	.	.	PASS	Atlas-Indel,Pindel
CTAGE9	643854	hgsc.bcm.edu	hg19	6	132030533	132030533	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	CTAGE9	NM_001145659	exon1	c.1626delG	p.L542fs	.	.	393.0	36.0	268.0	0.0	.	56	.	0.0916031	0	none	.	.	PASS	Atlas-Indel,Pindel
MYO18A	399687	hgsc.bcm.edu	hg19	17	27438845	27438845	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	MYO18A	NM_078471	exon16	c.2636delT	p.L879fs	.	.	95.0	46.0	64.0	0.0	.	217	.	0.484211	0	none	.	.	PASS	Atlas-Indel,Pindel
NAALADL1	10004	hgsc.bcm.edu	hg19	11	64815657	64815657	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	NAALADL1	NM_005468	exon10	c.1316delT	p.V439fs	.	.	83.0	28.0	85.0	0.0	.	58	.	0.337349	0	none	.	.	PASS	Atlas-Indel,Pindel
CLIP2	7461	hgsc.bcm.edu	hg19	7	73790571	73790571	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	CLIP2	NM_003388	exon10	c.1839delG	p.W613X	.	.	263.0	116.0	207.0	0.0	.	134	.	0.441065	0	none	.	.	PASS	Atlas-Indel,Pindel
SCN10A	6336	hgsc.bcm.edu	hg19	3	38739055	38739055	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	SCN10A	NM_006514	exon27	c.5657delC	p.A1886fs	.	.	148.0	72.0	97.0	0.0	.	359	.	0.486486	0	none	.	.	PASS	Atlas-Indel,Pindel
WFIKKN1	117166	hgsc.bcm.edu	hg19	16	682600	682600	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	WFIKKN1,larynx,carcinoma,0,1	WFIKKN1	NM_053284	exon2	c.189delG	p.E63fs	.	.	187.0	35.0	133.0	0.0	.	30	.	0.187166	0	none	.	.	PASS	Atlas-Indel,Pindel
EPHA3	2042	hgsc.bcm.edu	hg19	3	89259542	89259542	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	EPHA3_ENST00000452448,colon,carcinoma,-2,6	EPHA3	NM_005233	exon3	c.685delT	p.S229fs	.	.	123.0	55.0	86.0	0.0	.	501	.	0.447154	0	none	.	.	PASS	Atlas-Indel,Pindel
DOCK3	1795	hgsc.bcm.edu	hg19	3	51350329	51350329	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	DOCK3	NM_004947	exon31	c.3248delA	p.N1083fs	.	.	111.0	56.0	82.0	0.0	.	397	.	0.504505	0	none	.	.	PASS	Atlas-Indel,Pindel
RYR2	6262	hgsc.bcm.edu	hg19	1	237791158	237791159	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	RYR2	NM_001035	exon41	c.6218_6219insT	p.S2073fs	.	.	87.0	28.0	60.0	0.0	.	1273	.	0.321839	0	none	.	.	PASS	Atlas-Indel,Pindel
NFATC3	4775	hgsc.bcm.edu	hg19	16	68156669	68156669	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	NFATC3	NM_173163	exon2	c.882delT	p.V294fs	.	.	97.0	43.0	58.0	0.0	.	190	.	0.443299	0	none	.	.	PASS	Atlas-Indel,Pindel
GPATCH2L	55668	hgsc.bcm.edu	hg19	14	76662242	76662242	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	.	NM_017926	exon9	c.1214delG	p.G405fs	.	.	75.0	12.0	74.0	0.0	.	.	.	0.16	0	none	.	.	PASS	Atlas-Indel,Pindel
CLEC7A	64581	hgsc.bcm.edu	hg19	12	10279210	10279211	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2Z-A9J5-01A-21D-A382-10	TCGA-2Z-A9J5-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	237ddfd6-6bf8-4d4b-aa08-0da80f631160	b35fa663-4ad4-4c0b-9d5a-c6490a0c9009	.	CLEC7A	NM_197947	exon3	c.300_301insT	p.L100fs	.	.	111.0	15.0	76.0	0.0	.	55	.	0.135	.	none	.	.	PASS	Pindel