Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm KIF1B 23095 hgsc.bcm.edu hg19 1 10338126 10338126 + Nonsense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . KIF1B NM_183416 exon12 c.G1102T p.E368X TTAAAGGAGGAGG . 76.0 28.0 104.0 0.0 . 242 . . . none . . PASS Atlas-SNP LDLRAP1 26119 hgsc.bcm.edu hg19 1 25889207 25889207 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . LDLRAP1 NM_015627 exon5 c.G532A p.E178K AAGGAAGGTGAGA . 84.0 28.0 107.0 0.0 . 28 . . . none . . PASS Atlas-SNP RNF19B 127544 hgsc.bcm.edu hg19 1 33402549 33402549 + Missense_Mutation SNP C C G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . RNF19B NM_153341 exon9 c.G2057C p.G686A GGGGAGCCACACT . 42.0 19.0 60.0 0.0 . 43 . . . none . . PASS Atlas-SNP EPHA10 284656 hgsc.bcm.edu hg19 1 38192854 38192854 + Silent SNP G G C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . EPHA10 NM_001099439 exon8 c.C1692G p.P564P AATGGCGGGGCTC . 113.0 39.0 124.0 0.0 . 120 . . . none . . PASS Atlas-SNP PDE4B 5142 hgsc.bcm.edu hg19 1 66798100 66798100 + Missense_Mutation SNP A A C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PDE4B NM_001037339 exon1 c.A28C p.S10R TTCAGTAGCACCG . 88.0 44.0 81.0 0.0 . 231 . . . none . . PASS Atlas-SNP BCL10 8915 hgsc.bcm.edu hg19 1 85741991 85741991 + Missense_Mutation SNP T T G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . BCL10 NM_003921 exon1 c.A45C p.E15D CTTCACTTCAGTG . 59.0 34.0 76.0 0.0 . 39 . . . none . . PASS Atlas-SNP GBP3 2635 hgsc.bcm.edu hg19 1 89473418 89473418 + Silent SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . GBP3 NM_018284 exon11 c.C1777T p.L593L TCTTTAGCTTATG . 68.0 25.0 51.0 0.0 . 53 . . . none . . PASS Atlas-SNP ZNF644 84146 hgsc.bcm.edu hg19 1 91404516 91404516 + Missense_Mutation SNP T T G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . ZNF644 NM_201269 exon3 c.A2395C p.S799R TGAAGCTTTCAGG . 71.0 32.0 42.0 0.0 . 120 . . . none . . PASS Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158622405 158622405 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . SPTA1 NM_003126 exon23 c.G3227A p.R1076H AGACGACGTCTGC . 84.0 33.0 61.0 0.0 . 720 . . . none . . PASS Atlas-SNP NCSTN 23385 hgsc.bcm.edu hg19 1 160326855 160326855 + Missense_Mutation SNP G G C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . NCSTN NM_015331 exon16 c.G1819C p.G607R GTCCAGGGCCCTT . 98.0 43.0 93.0 0.0 . 64 . . . none . . PASS Atlas-SNP AGT 183 hgsc.bcm.edu hg19 1 230846200 230846200 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . AGT NM_000029 exon2 c.G397A p.V133I AGAGGACGGTGGC . 74.0 25.0 94.0 0.0 . 62 . . . none . . PASS Atlas-SNP KIF26B 55083 hgsc.bcm.edu hg19 1 245319611 245319611 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . KIF26B NM_018012 exon2 c.C91T p.P31S ACCAAGCCCGCAG . 95.0 50.0 117.0 0.0 . 343 . . . none . . PASS Atlas-SNP LPIN1 23175 hgsc.bcm.edu hg19 2 11924034 11924034 + Silent SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . LPIN1 NM_001261428 exon10 c.G1491A p.L497L GGCCCTGTATTTT . 82.0 35.0 98.0 0.0 . 99 . . . none . . PASS Atlas-SNP NRXN1 9378 hgsc.bcm.edu hg19 2 51255154 51255154 + Silent SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . NRXN1 NM_004801 exon2 c.C258T p.G86G GCGGCCGCCGCGC . 48.0 19.0 39.0 0.0 . 1118 . . . none . . PASS Atlas-SNP WDPCP 51057 hgsc.bcm.edu hg19 2 63380691 63380691 + Missense_Mutation SNP C C G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c WDPCP,NS,carcinoma,0,1 WDPCP NM_015910 exon16 c.G2097C p.R699S TTCATTCCTTCTG . 59.0 19.0 50.0 0.0 . 79 . . . none . . PASS Atlas-SNP ACTR1B 10120 hgsc.bcm.edu hg19 2 98275931 98275931 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c ACTR1B,colon,carcinoma,0,1 ACTR1B NM_005735 exon4 c.G199A p.G67R GCAGCCCCCGGTG . 34.0 12.0 45.0 0.0 . 34 . . . none . . PASS Atlas-SNP MERTK 10461 hgsc.bcm.edu hg19 2 112705128 112705128 + Silent SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . MERTK NM_006343 exon4 c.C741T p.S247S CCCCTCCGTGCTA . 131.0 50.0 112.0 0.0 . 112 . . . none . . PASS Atlas-SNP STAM2 10254 hgsc.bcm.edu hg19 2 152980339 152980339 + Silent SNP A A C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . STAM2 NM_005843 exon13 c.T1290G p.S430S AGGCAGAGATCTC . 91.0 39.0 68.0 0.0 . 44 . . . none . . PASS Atlas-SNP UPP2 151531 hgsc.bcm.edu hg19 2 158978032 158978032 + Missense_Mutation SNP A A G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . UPP2 NM_001135098 exon7 c.A737G p.D246G AACTGGACAAAGA . 349.0 67.0 288.0 0.0 . 60 . . . none . . PASS Atlas-SNP LY75 4065 hgsc.bcm.edu hg19 2 160743016 160743016 + Missense_Mutation SNP G G C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . LY75 NM_002349 exon5 c.C828G p.F276L AATCCAGAAAATC . 30.0 16.0 21.0 0.0 . 151 . . . none . . PASS Atlas-SNP SCN9A 6335 hgsc.bcm.edu hg19 2 167142945 167142945 + Silent SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c SCN9A,NS,carcinoma,0,1 SCN9A NM_002977 exon11 c.G1503A p.S501S TGATTTCGACAAT . 53.0 13.0 51.0 0.0 . 296 . . . none . . PASS Atlas-SNP NYAP2 57624 hgsc.bcm.edu hg19 2 226378138 226378138 + Silent SNP T T C rs373061629 TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . . NM_020864 exon3 c.T273C p.H91H CAAACATTTCCGC . 117.0 52.0 116.0 0.0 . . . . . weak . . PASS Atlas-SNP KCNJ13 3769 hgsc.bcm.edu hg19 2 233633084 233633084 + Silent SNP T T C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . KCNJ13 NM_002242 exon3 c.A900G p.A300A CAGAGATGCAAAA . 145.0 65.0 131.0 0.0 . 18 . . . none . . PASS Atlas-SNP TTC21A 199223 hgsc.bcm.edu hg19 3 39175775 39175775 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . TTC21A NM_145755 exon21 c.G2839T p.A947S CACTGTGCCATCC . 81.0 36.0 83.0 0.0 . 96 . . . none . . PASS Atlas-SNP TGM4 7047 hgsc.bcm.edu hg19 3 44943387 44943387 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . TGM4 NM_003241 exon8 c.G935A p.G312D AGAATGGCGAGAA . 74.0 28.0 70.0 0.0 . 82 . . . none . . PASS Atlas-SNP EPHA6 285220 hgsc.bcm.edu hg19 3 96706660 96706660 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c EPHA6_ENST00000389672,rectum,carcinoma,-2,4 EPHA6 NM_001080448 exon3 c.G937T p.D313Y TTTCCTGATACCA . 74.0 32.0 75.0 0.0 . 439 . . . none . . PASS Atlas-SNP MBD4 8930 hgsc.bcm.edu hg19 3 129156116 129156116 + Missense_Mutation SNP A A C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . MBD4 NM_003925 exon3 c.T371G p.L124R TTAGCAAGTGAAC . 33.0 24.0 21.0 0.0 . 53 . . . none . . PASS Atlas-SNP B3GALNT1 8706 hgsc.bcm.edu hg19 3 160803876 160803876 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . B3GALNT1 NM_001038628 exon8 c.C667A p.H223N AAATATGGGTTTT . 104.0 65.0 42.0 0.0 . 34 . . . none . . PASS Atlas-SNP VWA5B2 90113 hgsc.bcm.edu hg19 3 183957755 183957755 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . VWA5B2 NM_138345 exon15 c.G2671A p.A891T CTGACAGCAGCCT . 97.0 23.0 52.0 0.0 . 47 . . . none . . PASS Atlas-SNP STX18 53407 hgsc.bcm.edu hg19 4 4459185 4459185 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . STX18 NM_016930 exon4 c.C395T p.T132I ACAGCGGTCCTGT . 219.0 85.0 182.0 0.0 . 16 . . . none . . PASS Atlas-SNP EVC 2121 hgsc.bcm.edu hg19 4 5755635 5755635 + Missense_Mutation SNP C C T rs372893834 alternate_allele TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . EVC NM_153717 exon10 c.C1439T p.T480I AGCCGACTGCTGA . 108.0 59.0 140.0 0.0 . 90 . . . alt . . PASS Atlas-SNP SLIT2 9353 hgsc.bcm.edu hg19 4 20493404 20493404 + Missense_Mutation SNP C C A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c .,1 SLIT2 NM_004787 exon9 c.C796A p.P266T ATGGCTCCTTCTT . 65.0 32.0 53.0 0.0 . 290 . . . none . . PASS Atlas-SNP APBB2 323 hgsc.bcm.edu hg19 4 41015837 41015837 + Missense_Mutation SNP T T A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . APBB2 NM_173075 exon6 c.A598T p.I200F CAATGATGGTGGA . 60.0 23.0 66.0 0.0 . 61 . . . none . . PASS Atlas-SNP RUFY3 22902 hgsc.bcm.edu hg19 4 71639251 71639251 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . RUFY3 NM_001130709 exon6 c.G900T p.M300I TTCAATGTATCTC . 176.0 69.0 204.0 0.0 . 61 . . . none . . PASS Atlas-SNP SLC4A4 8671 hgsc.bcm.edu hg19 4 72222802 72222802 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . SLC4A4 NM_001098484 exon6 c.C628T p.R210W TTGCTCCGGAAGC . 76.0 23.0 58.0 0.0 . 269 . . . none . . PASS Atlas-SNP ARHGAP10 79658 hgsc.bcm.edu hg19 4 148800473 148800473 + Missense_Mutation SNP G G C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . ARHGAP10 NM_024605 exon9 c.G923C p.R308T AGCACAGATCTGG . 82.0 26.0 68.0 0.0 . 92 . . . none . . PASS Atlas-SNP ETFDH 2110 hgsc.bcm.edu hg19 4 159629584 159629584 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . ETFDH NM_004453 exon13 c.G1759T p.V587L AACTGTGTACATT . 81.0 34.0 90.0 0.0 . 57 . . . none . . PASS Atlas-SNP PCDHA9 9752 hgsc.bcm.edu hg19 5 140230427 140230427 + Missense_Mutation SNP A A G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PCDHA9 NM_031857 exon1 c.A2347G p.T783A GGATCTACAGAGC . 182.0 149.0 208.0 0.0 . 373 . . . none . . PASS Atlas-SNP PCDHGC4 56098 hgsc.bcm.edu hg19 5 140865167 140865167 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PCDHGC4 NM_018928 exon1 c.G427A p.G143R GAAATTGGGGAGG . 43.0 16.0 49.0 0.0 . 91 . . . none . . PASS Atlas-SNP GABRP 2568 hgsc.bcm.edu hg19 5 170235705 170235705 + Missense_Mutation SNP T T G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . GABRP NM_014211 exon8 c.T781G p.W261G TTGTCCTGGGTTT . 49.0 23.0 44.0 0.0 . 65 . . . none . . PASS Atlas-SNP PFN3 345456 hgsc.bcm.edu hg19 5 176827428 176827428 + Silent SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PFN3 NM_001029886 exon1 c.G150A p.V50V CGTGAGCACGCCC . 17.0 6.0 23.0 0.0 . 4 . . . none . . PASS Atlas-SNP DSP 1832 hgsc.bcm.edu hg19 6 7542208 7542208 + Silent SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . DSP NM_004415 exon1 c.C60T p.A20A CCGCGCCGAGTCT . 148.0 71.0 170.0 0.0 . 306 . . . none . . PASS Atlas-SNP DSP 1832 hgsc.bcm.edu hg19 6 7584627 7584627 + Missense_Mutation SNP A A T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . DSP NM_004415 exon24 c.A7132T p.I2378F GGGATCATTGACC . 77.0 34.0 73.0 0.0 . 306 . . . none . . PASS Atlas-SNP GCNT2 2651 hgsc.bcm.edu hg19 6 10529857 10529857 + Missense_Mutation SNP A A C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . GCNT2 NM_145649 exon3 c.A713C p.N238T TGTTAAACCACAA . 53.0 17.0 70.0 0.0 . 123 . . . none . . PASS Atlas-SNP OR2J3 442186 hgsc.bcm.edu hg19 6 29080095 29080095 + Missense_Mutation SNP T T G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . OR2J3 NM_001005216 exon1 c.T428G p.F143C CTCGTTTCTGCCA . 114.0 45.0 75.0 0.0 . 53 . . . none . . PASS Atlas-SNP MDC1 9656 hgsc.bcm.edu hg19 6 30680834 30680834 + Silent SNP A A C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . MDC1 NM_014641 exon5 c.T885G p.P295P CTCTCCAGGAGGT . 87.0 38.0 71.0 0.0 . 218 . . . none . . PASS Atlas-SNP RRP36 88745 hgsc.bcm.edu hg19 6 42989441 42989441 + Nonsense_Mutation SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . RRP36 NM_033112 exon1 c.C49T p.R17X GGGGCCCGACGTC . 23.0 10.0 27.0 0.0 . 20 . . . none . . PASS Atlas-SNP PHKG1 5260 hgsc.bcm.edu hg19 7 56155338 56155338 + Missense_Mutation SNP A A G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PHKG1 NM_001258459 exon3 c.T215C p.L72P TCCTTCAGCGTGG . 83.0 65.0 45.0 0.0 . 38 . . . none . . PASS Atlas-SNP BAZ1B 9031 hgsc.bcm.edu hg19 7 72856678 72856678 + Missense_Mutation SNP G G C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . BAZ1B NM_032408 exon19 c.C4300G p.Q1434E GACACTGTTCTGT . 158.0 118.0 78.0 0.0 . 147 . . . none . . PASS Atlas-SNP CLIP2 7461 hgsc.bcm.edu hg19 7 73752959 73752959 + Silent SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . CLIP2 NM_032421 exon3 c.G303A p.T101T AGAGACGCAGTTC . 102.0 17.0 54.0 0.0 . 134 . . . none . . PASS Atlas-SNP AKAP9 10142 hgsc.bcm.edu hg19 7 91624968 91624968 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . AKAP9 NM_005751 exon7 c.G784A p.D262N GCTGCAGACTTAC . 430.0 95.0 189.0 0.0 . 788 . . . none . . PASS Atlas-SNP PEX1 5189 hgsc.bcm.edu hg19 7 92147296 92147296 + Missense_Mutation SNP T T C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PEX1 NM_000466 exon5 c.A533G p.Q178R TTTGGCTGAATAA . 198.0 152.0 60.0 0.0 . 102 . . . none . . PASS Atlas-SNP MTFR1 9650 hgsc.bcm.edu hg19 8 66617006 66617006 + Missense_Mutation SNP T T C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . MTFR1 NM_014637 exon5 c.T359C p.L120S TTTCCTTACCAGA . 197.0 67.0 137.0 0.0 . 26 . . . none . . PASS Atlas-SNP MMP16 4325 hgsc.bcm.edu hg19 8 89068476 89068476 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . MMP16 NM_005941 exon8 c.C1253T p.T418I TGAAGAGTTGTAT . 175.0 101.0 109.0 0.0 . 176 . . . none . . PASS Atlas-SNP ZNF517 340385 hgsc.bcm.edu hg19 8 146033121 146033121 + Missense_Mutation SNP T T C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . ZNF517 NM_213605 exon5 c.T820C p.S274P CGCAGCTCCCGGC . 67.0 37.0 49.0 0.0 . 30 . . . none . . PASS Atlas-SNP PTPN3 5774 hgsc.bcm.edu hg19 9 112145801 112145801 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PTPN3 NM_002829 exon23 c.C2284A p.P762T CGTCGGGGGGATC . 85.0 34.0 112.0 0.0 . 106 . . . none . . PASS Atlas-SNP NUP188 23511 hgsc.bcm.edu hg19 9 131731688 131731688 + Silent SNP T T C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . NUP188 NM_015354 exon10 c.T807C p.S269S CTTCAGTGCCCTC . 82.0 33.0 73.0 0.0 . 140 . . . none . . PASS Atlas-SNP PTPLA 9200 hgsc.bcm.edu hg19 10 17645619 17645619 + Silent SNP A A T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PTPLA NM_014241 exon4 c.T423A p.T141T GACCCCAGTCACA . 169.0 11.0 210.0 0.0 . 34 . . . none . . PASS Atlas-SNP OTUD1 220213 hgsc.bcm.edu hg19 10 23729477 23729477 + Missense_Mutation SNP A A G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . OTUD1 NM_001145373 exon1 c.A1091G p.E364G TGGGGGAGTTTAT . 56.0 20.0 62.0 0.0 . 9 . . . none . . PASS Atlas-SNP GBF1 8729 hgsc.bcm.edu hg19 10 104018748 104018748 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . GBF1 NM_001199378 exon2 c.G53T p.G18V TGGTTGGGGCCAT . 83.0 39.0 101.0 0.0 . 142 . . . none . . PASS Atlas-SNP PTPRE 5791 hgsc.bcm.edu hg19 10 129846027 129846027 + Splice_Site SNP G G C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PTPRE NM_006504 exon5 c.210-1G>C . CTCTAAGGTTCAG . 94.0 45.0 86.0 0.0 . 132 . . . none . . PASS Atlas-SNP DNHD1 144132 hgsc.bcm.edu hg19 11 6579352 6579352 + Missense_Mutation SNP C C A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . DNHD1 NM_144666 exon25 c.C8827A p.L2943M GTGGCTCTGTTGG . 76.0 30.0 80.0 0.0 . 198 . . . none . . PASS Atlas-SNP PPFIBP2 8495 hgsc.bcm.edu hg19 11 7672127 7672127 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PPFIBP2 NM_003621 exon22 c.G2178T p.W726C GGAGTGGTTACGA . 65.0 29.0 101.0 0.0 . 87 . . . none . . PASS Atlas-SNP OR5P2 120065 hgsc.bcm.edu hg19 11 7818479 7818479 + Missense_Mutation SNP A A C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . OR5P2 NM_153444 exon1 c.T11G p.L4R TCCTTCAGGGAAT . 41.0 21.0 31.0 0.0 . 68 . . . none . . PASS Atlas-SNP CAT 847 hgsc.bcm.edu hg19 11 34475367 34475367 + Missense_Mutation SNP A A C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . CAT NM_001752 exon6 c.A605C p.D202A TCAGTGATCGGGG . 77.0 34.0 67.0 0.0 . 42 . . . none . . PASS Atlas-SNP EXT2 2132 hgsc.bcm.edu hg19 11 44129381 44129381 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . EXT2 NM_000401 exon2 c.C218T p.T73I TTGCCACTGGCAT . 84.0 32.0 101.0 0.0 . 129 . . . none . . PASS Atlas-SNP ATG13 9776 hgsc.bcm.edu hg19 11 46690086 46690086 + Missense_Mutation SNP T T A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . ATG13 NM_001205119 exon15 c.T1289A p.F430Y CCATGTTTGCTCC . 61.0 33.0 77.0 0.0 . 60 . . . none . . PASS Atlas-SNP SYTL2 54843 hgsc.bcm.edu hg19 11 85445743 85445743 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . SYTL2 NM_001162953 exon6 c.C629A p.T210N ATTGAAGTATCTG . 77.0 32.0 79.0 0.0 . 231 . . . none . . PASS Atlas-SNP HTR3A 3359 hgsc.bcm.edu hg19 11 113853914 113853914 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . HTR3A NM_000869 exon5 c.G465T p.K155N CTACAAGCCCCTT . 89.0 26.0 97.0 0.0 . 93 . . . none . . PASS Atlas-SNP ABCG4 64137 hgsc.bcm.edu hg19 11 119025032 119025032 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c ABCG4,NS,carcinoma,0,1 ABCG4 NM_022169 exon4 c.G419T p.R140L CCTTCCGCAAGAT . 50.0 22.0 73.0 0.0 . 77 . . . none . . PASS Atlas-SNP CD163L1 283316 hgsc.bcm.edu hg19 12 7528025 7528025 + Silent SNP T T C rs368493737 TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . CD163L1 NM_174941 exon11 c.A2853G p.G951G TTTTCCTCCTGTG . 59.0 23.0 45.0 0.0 . 238 . . . weak . . PASS Atlas-SNP SMCO3 0 hgsc.bcm.edu hg19 12 14959531 14959531 + Silent SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . . NM_001013698 exon2 c.C84T p.C28C AGATAAGCAATCA . 56.0 29.0 54.0 0.0 . . . . . none . . PASS Atlas-SNP EIF4B 1975 hgsc.bcm.edu hg19 12 53432173 53432173 + Silent SNP T T C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . EIF4B NM_001417 exon12 c.T1554C p.S518S ACCATCTGAGGAA . 82.0 43.0 81.0 0.0 . 38 . . . none . . PASS Atlas-SNP AVIL 10677 hgsc.bcm.edu hg19 12 58201151 58201151 + Missense_Mutation SNP A A T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . AVIL NM_006576 exon12 c.T1454A p.F485Y GCCATGAAGTGGC . 60.0 29.0 79.0 0.0 . 60 . . . none . . PASS Atlas-SNP FAM71C 196472 hgsc.bcm.edu hg19 12 100042118 100042118 + Silent SNP A A C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . FAM71C NM_153364 exon1 c.A166C p.R56R AGCAAAAGAGGAG . 65.0 32.0 77.0 0.0 . 48 . . . none . . PASS Atlas-SNP DRAM1 55332 hgsc.bcm.edu hg19 12 102271585 102271585 + Silent SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . DRAM1 NM_018370 exon1 c.G18A p.R6R CCTGAGGGGAATG . 25.0 8.0 18.0 0.0 . 46 . . . none . . PASS Atlas-SNP STAB2 55576 hgsc.bcm.edu hg19 12 104031881 104031881 + Missense_Mutation SNP A A G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . STAB2 NM_017564 exon8 c.A797G p.E266G GCCAAGAAGGCTA . 89.0 34.0 77.0 0.0 . 370 . . . none . . PASS Atlas-SNP LRRC43 254050 hgsc.bcm.edu hg19 12 122674790 122674790 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . LRRC43 NM_001098519 exon5 c.C776T p.P259L GAAACCCACTGGC . 66.0 35.0 82.0 0.0 . 105 . . . none . . PASS Atlas-SNP PARP4 143 hgsc.bcm.edu hg19 13 25026604 25026604 + Missense_Mutation SNP A A G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PARP4 NM_006437 exon24 c.T2954C p.L985P AATGTCAGGCTCT . 73.0 39.0 81.0 0.0 . 142 . . . none . . PASS Atlas-SNP LECT1 11061 hgsc.bcm.edu hg19 13 53298215 53298215 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . LECT1 NM_007015 exon4 c.G385A p.E129K ACTTCTCTCCTCC . 51.0 27.0 44.0 0.0 . 44 . . . none . . PASS Atlas-SNP LMO7 4008 hgsc.bcm.edu hg19 13 76195877 76195877 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . LMO7 NM_005358 exon1 c.G48T p.M16I TTGGATGTCCTAT . 59.0 14.0 41.0 0.0 . 334 . . . none . . PASS Atlas-SNP LMO7 4008 hgsc.bcm.edu hg19 13 76378589 76378589 + Missense_Mutation SNP C C A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . LMO7 NM_005358 exon9 c.C982A p.L328M GCACCTCTGAGAA . 77.0 30.0 64.0 0.0 . 334 . . . none . . PASS Atlas-SNP TEP1 7011 hgsc.bcm.edu hg19 14 20846278 20846278 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . TEP1 NM_007110 exon39 c.C5626T p.R1876W CCAGCCGTGCCCC . 68.0 40.0 79.0 0.0 . 224 . . . none . . PASS Atlas-SNP PRMT5 10419 hgsc.bcm.edu hg19 14 23393872 23393872 + Missense_Mutation SNP T T C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PRMT5 NM_006109 exon9 c.A986G p.K329R GGGTCCTTTTCAA . 67.0 4.0 77.0 0.0 . 101 . . . none . . PASS Atlas-SNP RALGAPA1 253959 hgsc.bcm.edu hg19 14 36103901 36103901 + Missense_Mutation SNP G G C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . RALGAPA1 NM_194301 exon32 c.C4356G p.S1452R AGAGAGGCTCATG . 124.0 52.0 125.0 0.0 . 289 . . . none . . PASS Atlas-SNP BMP4 652 hgsc.bcm.edu hg19 14 54417256 54417256 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . BMP4 NM_130851 exon4 c.C721A p.L241I GATGGAGGTGAGT . 107.0 44.0 141.0 0.0 . 45 . . . none . . PASS Atlas-SNP SYT16 83851 hgsc.bcm.edu hg19 14 62536436 62536436 + Silent SNP T T G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . SYT16 NM_031914 exon2 c.T639G p.S213S GACATCTGAGAAA . 102.0 43.0 115.0 0.0 . 144 . . . none . . PASS Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64548159 64548159 + Splice_Site SNP A A G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . SYNE2 NM_182914 exon57 c.11347-2A>G . TTTCCCAGGCCAC . 67.0 28.0 76.0 0.0 . 577 . . . none . . PASS Atlas-SNP RDH12 145226 hgsc.bcm.edu hg19 14 68195931 68195931 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . RDH12 NM_152443 exon8 c.G682T p.V228L TACGCAGTGCACC . 594.0 249.0 774.0 1.0 . 43 . . . none . . PASS Atlas-SNP TTLL5 23093 hgsc.bcm.edu hg19 14 76173407 76173407 + Missense_Mutation SNP T T G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . TTLL5 NM_015072 exon8 c.T632G p.I211S GTTACATTAACAA . 81.0 26.0 91.0 0.0 . 102 . . . none . . PASS Atlas-SNP ITPK1 3705 hgsc.bcm.edu hg19 14 93429129 93429129 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . ITPK1 NM_001142593 exon6 c.C430A p.L144M CCAGCAGCCGCAT . 40.0 11.0 57.0 0.0 . 53 . . . none . . PASS Atlas-SNP SPTBN5 51332 hgsc.bcm.edu hg19 15 42163671 42163671 + Silent SNP G G C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . SPTBN5 NM_016642 exon29 c.C5244G p.G1748G CTGGCTGCCCATC . 127.0 51.0 166.0 0.0 . 171 . . . none . . PASS Atlas-SNP MAP1A 4130 hgsc.bcm.edu hg19 15 43815125 43815125 + Missense_Mutation SNP A A G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . MAP1A NM_002373 exon4 c.A1454G p.K485R GAGTCAAAATAGA . 115.0 57.0 134.0 0.0 . 189 . . . none . . PASS Atlas-SNP DMXL2 23312 hgsc.bcm.edu hg19 15 51749533 51749533 + Missense_Mutation SNP C C A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . DMXL2 NM_001174116 exon36 c.G8266T p.A2756S CACTAGCTCCAGT . 60.0 28.0 48.0 0.0 . 262 . . . none . . PASS Atlas-SNP KIAA1024 23251 hgsc.bcm.edu hg19 15 79760702 79760702 + Silent SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . KIAA1024 NM_015206 exon4 c.G2727T p.V909V TGTCGTGCCCATC . 57.0 5.0 31.0 0.0 . 146 . . . none . . PASS Atlas-SNP NR2F2 7026 hgsc.bcm.edu hg19 15 96875731 96875731 + Missense_Mutation SNP T T C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . NR2F2 NM_021005 exon1 c.T397C p.Y133H TGCCAGTACTGCC . 76.0 35.0 111.0 0.0 . 35 . . . none . . PASS Atlas-SNP IL32 9235 hgsc.bcm.edu hg19 16 3119208 3119208 + Missense_Mutation SNP C C A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . IL32 NM_004221 exon7 c.C419A p.A140E TCCATGCAGTGCA . 210.0 41.0 220.0 0.0 . 32 . . . none . . PASS Atlas-SNP SALL1 6299 hgsc.bcm.edu hg19 16 51171131 51171131 + Silent SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . SALL1 NM_002968 exon3 c.G3867A p.E1289E ATTGGGCTCTGAG . 132.0 38.0 98.0 0.0 . 301 . . . none . . PASS Atlas-SNP PDPR 55066 hgsc.bcm.edu hg19 16 70170204 70170204 + Missense_Mutation SNP A A G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PDPR NM_017990 exon10 c.A1105G p.M369V TGCATCATGGGCG . 99.0 15.0 73.0 0.0 . 66 . . . none . . PASS Atlas-SNP SLC43A2 124935 hgsc.bcm.edu hg19 17 1486541 1486541 + Missense_Mutation SNP A A G novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . SLC43A2 NM_152346 exon11 c.T1307C p.V436A AAGCCCACGAGCA . 113.0 25.0 68.0 0.0 . 37 . . . none . . PASS Atlas-SNP NCOR1 9611 hgsc.bcm.edu hg19 17 16004686 16004686 + Missense_Mutation SNP T T A rs201420293 bycluster;alternate_allele TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . NCOR1 NM_001190440 exon19 c.A2616T p.R872S TTCATCTCTAGGT . 80.0 47.0 46.0 0.0 . 240 . . . alt T|0.999;C|0.001 . PASS Atlas-SNP ARHGAP23 57636 hgsc.bcm.edu hg19 17 36636124 36636124 + Missense_Mutation SNP G G C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . ARHGAP23 NM_001199417 exon14 c.G2629C p.D877H AGCAAGGGTAGGA . 136.0 42.0 135.0 0.0 . 48 . . . none . . PASS Atlas-SNP FAM20A 54757 hgsc.bcm.edu hg19 17 66538847 66538847 + Missense_Mutation SNP A A C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . FAM20A NM_017565 exon6 c.T916G p.F306V AGACAAAGAAAAC . 85.0 21.0 57.0 0.0 . 35 . . . none . . PASS Atlas-SNP UBE2O 63893 hgsc.bcm.edu hg19 17 74391896 74391896 + Silent SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . UBE2O NM_022066 exon15 c.G2856A p.K952K GAACTTCTTGGCT . 51.0 17.0 41.0 0.0 . 207 . . . none . . PASS Atlas-SNP FOXK2 3607 hgsc.bcm.edu hg19 17 80477826 80477826 + Missense_Mutation SNP G G C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c FOXK2,NS,carcinoma,0,1 FOXK2 NM_004514 exon1 c.G62C p.G21A GGGCCGGGGGCGG . 4.0 2.0 0.0 0.0 . 46 . . . none . . PASS Atlas-SNP APCDD1 147495 hgsc.bcm.edu hg19 18 10487720 10487720 + Nonsense_Mutation SNP C C A rs139112764 alternate_allele TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c APCDD1,caecum,carcinoma,0,1 APCDD1 NM_153000 exon5 c.C1230A p.C410X TGGCTGCGTGGCC . 101.0 46.0 67.0 0.0 . 57 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP TCF4 6925 hgsc.bcm.edu hg19 18 53018225 53018225 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . TCF4 NM_001243226 exon8 c.C685T p.L229F CTCCAAGGAGACT . 107.0 47.0 66.0 0.0 . 178 . . . none . . PASS Atlas-SNP PNPLA6 10908 hgsc.bcm.edu hg19 19 7619899 7619899 + Missense_Mutation SNP T T C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PNPLA6 NM_001166111 exon24 c.T2785C p.S929P TGGTGCTCGGGGC . 35.0 13.0 12.0 0.0 . 163 . . . none . . PASS Atlas-SNP ZNF627 199692 hgsc.bcm.edu hg19 19 11727866 11727866 + Missense_Mutation SNP G G A rs200860012 bycluster TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c ZNF627,caecum,carcinoma,0,2 ZNF627 NM_145295 exon4 c.G548A p.R183Q GCATTCGAAGACA . 99.0 48.0 69.0 0.0 . 43 . . . weak . . PASS Atlas-SNP FBXW9 84261 hgsc.bcm.edu hg19 19 12805491 12805491 + Missense_Mutation SNP A A T rs201026853 by1000genomes;alternate_allele TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . FBXW9 NM_032301 exon3 c.T595A p.L199M CCCACAAGTTGAC . 92.0 36.0 87.0 0.0 . 30 . . . alt A|0.999;G|0.001 . PASS Atlas-SNP UNC13A 23025 hgsc.bcm.edu hg19 19 17751432 17751432 + Missense_Mutation SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . UNC13A NM_001080421 exon21 c.G2675A p.G892E GGCACCCCTGGGC . 66.0 29.0 85.0 0.0 . 299 . . . none . . PASS Atlas-SNP ZNF229 7772 hgsc.bcm.edu hg19 19 44932512 44932512 + Missense_Mutation SNP T T A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . ZNF229 NM_014518 exon6 c.A2444T p.Q815L ACTCTTTGGTGGT . 92.0 45.0 66.0 0.0 . 123 . . . none . . PASS Atlas-SNP GRIN2D 2906 hgsc.bcm.edu hg19 19 48918125 48918125 + Missense_Mutation SNP C C A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . GRIN2D NM_000836 exon6 c.C1417A p.P473T AGCCCTCCACCGG . 88.0 39.0 103.0 0.0 . 76 . . . none . . PASS Atlas-SNP PLEKHA4 57664 hgsc.bcm.edu hg19 19 49341323 49341323 + Missense_Mutation SNP G G T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PLEKHA4 NM_001161354 exon16 c.C1732A p.L578I TTGGGAGAGGCTG . 142.0 69.0 184.0 0.0 . 70 . . . none . . PASS Atlas-SNP ZNF471 57573 hgsc.bcm.edu hg19 19 57035735 57035735 + Missense_Mutation SNP A A C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . ZNF471 NM_020813 exon5 c.A299C p.Q100P TGAAGCAGTTCAT . 66.0 32.0 76.0 0.0 . 99 . . . none . . PASS Atlas-SNP ZNF814 730051 hgsc.bcm.edu hg19 19 58385869 58385869 + Nonsense_Mutation SNP C C A rs199684163 TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c ZNF814,NS,carcinoma,0,6 ZNF814 NM_001144989 exon3 c.G889T p.E297X CACATTCATGTTT . 15.0 6.0 19.0 1.0 . 93 . . . weak . . PASS Atlas-SNP CST2 1470 hgsc.bcm.edu hg19 20 23805942 23805942 + Missense_Mutation SNP A A T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c CST2,face,carcinoma,0,1 CST2 NM_001322 exon2 c.T247A p.Y83N AGAAGTAATTCAC . 58.0 24.0 58.0 0.0 . 39 . . . none . . PASS Atlas-SNP RNF114 55905 hgsc.bcm.edu hg19 20 48562762 48562762 + Missense_Mutation SNP T T A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . RNF114 NM_018683 exon4 c.T488A p.F163Y AATTATTCCATAG . 110.0 29.0 98.0 0.0 . 9 . . . none . . PASS Atlas-SNP IFNAR1 3454 hgsc.bcm.edu hg19 21 34707892 34707892 + Silent SNP C C T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . IFNAR1 NM_000629 exon2 c.C139T p.L47L TTTATCCTGAGGT . 112.0 45.0 111.0 0.0 . 44 . . . none . . PASS Atlas-SNP DYRK1A 1859 hgsc.bcm.edu hg19 21 38865374 38865374 + Missense_Mutation SNP T T C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . DYRK1A NM_001396 exon7 c.T1007C p.M336T TGGGAATGCCTTA . 83.0 34.0 65.0 0.0 . 85 . . . none . . PASS Atlas-SNP MORC2 22880 hgsc.bcm.edu hg19 22 31331124 31331124 + Missense_Mutation SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . MORC2 NM_014941 exon20 c.C1651T p.P551S ACCGAGGACGCTG . 90.0 43.0 98.0 0.0 . 78 . . . none . . PASS Atlas-SNP OFD1 8481 hgsc.bcm.edu hg19 X 13779314 13779314 + Missense_Mutation SNP C C A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . OFD1 NM_003611 exon17 c.C2371A p.P791T AGCCCTCCGGAGC . 44.0 40.0 29.0 0.0 . 109 . . . none . . PASS Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765164 66765164 + Missense_Mutation SNP A A T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . AR NM_000044 exon1 c.A176T p.Q59L TGCAGCAGCAGCA . 69.0 8.0 73.0 0.0 . 249 . . . none . . PASS Atlas-SNP COX3 5742 hgsc.bcm.edu hg19 MT 9447 9447 + Missense_Mutation SNP T T C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . . ENST00000362079 exon1 c.T241C p.Y81H CTTCGATACGGGA . 26.0 8.0 2.0 0.0 . . . . . none . . PASS Atlas-SNP CYTB 0 hgsc.bcm.edu hg19 MT 15756 15756 + Nonsense_Mutation SNP G G A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . . ENST00000361789 exon1 c.G1010A p.W337X TAACCTGAATCGG . 29.0 8.0 3.0 0.0 . . . . . none . . PASS Atlas-SNP PYROXD2 84795 hgsc.bcm.edu hg19 10 100147000 100147001 + Frame_Shift_Del DEL GA GA - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 GA GA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PYROXD2 NM_032709 exon14 c.1512_1513del p.504_505del . . 96.0 46.0 120.0 0.0 . 43 . 0.479167 0 none . . PASS Atlas-Indel,Pindel RARS 5917 hgsc.bcm.edu hg19 5 167944991 167944992 + Frame_Shift_Ins INS - - TA novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . RARS NM_002887 exon14 c.1797_1798insTA p.D599fs . . 77.0 30.0 63.0 0.0 . 58 . 0.38961 0 none . . PASS Atlas-Indel,Pindel SORCS3 22986 hgsc.bcm.edu hg19 10 107016678 107016678 + Frame_Shift_Del DEL A A - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . SORCS3 NM_014978 exon25 c.3438delT p.F1146fs . . 38.0 15.0 51.0 0.0 . 282 . 0.394737 0 none . . PASS Atlas-Indel,Pindel PDS5B 23047 hgsc.bcm.edu hg19 13 33332296 33332298 + In_Frame_Del DEL TGG TGG - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 TGG TGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PDS5B NM_015032 exon27 c.3127_3129del p.1043_1043del . . 351.0 137.0 335.0 0.0 . 141 . 0.390313 0 none . . PASS Atlas-Indel,Pindel XRN1 54464 hgsc.bcm.edu hg19 3 142141761 142141764 + Frame_Shift_Del DEL TACC TACC - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 TACC TACC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . XRN1 NM_001042604 exon7 c.712_715del p.238_239del . . 361.0 59.0 156.0 0.0 . 138 . 0.163435 0 none . . PASS Atlas-Indel,Pindel DCLRE1B 64858 hgsc.bcm.edu hg19 1 114450642 114450643 + Frame_Shift_Ins INS - - A novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . DCLRE1B NM_022836 exon3 c.367_368insA p.Y123_T124delinsX . . 57.0 26.0 68.0 0.0 . 36 . 0.45614 0 none . . PASS Atlas-Indel,Pindel RPS6KC1 26750 hgsc.bcm.edu hg19 1 213302993 213302993 + Frame_Shift_Del DEL C C - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . RPS6KC1 NM_012424 exon6 c.595delT p.S199fs . . 71.0 23.0 42.0 0.0 . 114 . 0.323944 0 none . . PASS Atlas-Indel,Pindel NUP214 8021 hgsc.bcm.edu hg19 9 134073449 134073453 + Frame_Shift_Del DEL CAGCC CAGCC - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 CAGCC CAGCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . NUP214 NM_005085 exon29 c.4567_4571del p.1523_1524del . . 76.0 34.0 88.0 0.0 . 166 . 0.447368 0 none . . PASS Atlas-Indel,Pindel UQCRC2 7385 hgsc.bcm.edu hg19 16 21974207 21974208 + Splice_Site INS - - T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . UQCRC2 NM_003366 exon6 c.514+1->T . . . 62.0 34.0 53.0 0.0 . 46 . 0.548387 0 none . . PASS Atlas-Indel,Pindel DSP 1832 hgsc.bcm.edu hg19 6 7584626 7584627 + Frame_Shift_Ins INS - - T novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . DSP NM_004415 exon24 c.7131_7132insT p.I2377fs . . 74.0 32.0 75.0 0.0 . 306 . 0.432432 0 none . . PASS Atlas-INDEL DDX58 23586 hgsc.bcm.edu hg19 9 32466289 32466289 + Frame_Shift_Del DEL T T - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . DDX58 NM_014314 exon16 c.2337delG p.K779fs . . 32.0 13.0 39.0 0.0 . 82 . 0.40625 0 none . . PASS Atlas-Indel,Pindel OGDHL 55753 hgsc.bcm.edu hg19 10 50944091 50944100 + Frame_Shift_Del DEL GGATGGTCAT GGATGGTCAT - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 GGATGGTCAT GGATGGTCAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . OGDHL NM_018245 exon22 c.2879_2888del p.960_963del . . 32.0 13.0 28.0 0.0 . 149 . 0.40625 0 none . . PASS Atlas-Indel,Pindel OR5W2 390148 hgsc.bcm.edu hg19 11 55682005 55682005 + Frame_Shift_Del DEL G G - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . OR5W2 NM_001001960 exon1 c.55delA p.N19fs . . 81.0 33.0 82.0 0.0 . 112 . 0.407407 0 none . . PASS Atlas-Indel,Pindel HIVEP2 3097 hgsc.bcm.edu hg19 6 143094459 143094459 + Frame_Shift_Del DEL C C - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . HIVEP2 NM_006734 exon5 c.1418delA p.D473fs . . 61.0 24.0 75.0 0.0 . 225 . 0.393443 0 none . . PASS Atlas-INDEL MYH9 4627 hgsc.bcm.edu hg19 22 36702564 36702570 + Frame_Shift_Del DEL TGCGGAA TGCGGAA - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 TGCGGAA TGCGGAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . MYH9 NM_002473 exon16 c.1928_1934del p.643_645del . . 57.0 17.0 89.0 0.0 . 225 . 0.298246 0 none . . PASS Atlas-Indel,Pindel FAM98B 283742 hgsc.bcm.edu hg19 15 38776684 38776685 + In_Frame_Ins INS - - GGG novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . FAM98B NM_173611 exon8 c.1126_1127insGGG p.W376delinsWG . . 41.0 14.0 47.0 0.0 . 53 . 0.341463 0 none . . PASS Atlas-INDEL IGFN1 91156 hgsc.bcm.edu hg19 1 201174369 201174369 + Frame_Shift_Del DEL C C - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . IGFN1 NM_001164586 exon11 c.1075delT p.S359fs . . 122.0 46.0 122.0 0.0 . 220 . 0.377049 0 none . . PASS Atlas-Indel,Pindel HSD17B14 51171 hgsc.bcm.edu hg19 19 49316501 49316502 + Frame_Shift_Ins INS - - C novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . HSD17B14 NM_016246 exon9 c.744_745insG p.G248fs . . 126.0 51.0 140.0 0.0 . 25 . 0.404762 0 none . . PASS Atlas-Indel,Pindel TTC21A 199223 hgsc.bcm.edu hg19 3 39175774 39175775 + Frame_Shift_Ins INS - - TCCA novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . TTC21A NM_145755 exon21 c.2838_2839insTCCA p.C946fs . . 82.0 36.0 84.0 0.0 . 96 . 0.439024 0 none . . PASS Atlas-INDEL ENOSF1 55556 hgsc.bcm.edu hg19 18 677380 677380 + Frame_Shift_Del DEL A A - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c ENOSF1,NS,lymphoid_neoplasm,0,1 ENOSF1 NM_202758 exon13 c.1135delG p.D379fs . . 123.0 56.0 132.0 0.0 . 44 . 0.455285 0 none . . PASS Atlas-Indel,Pindel DLK2 65989 hgsc.bcm.edu hg19 6 43418926 43418926 + Frame_Shift_Del DEL C C - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . DLK2 NM_206539 exon6 c.504delT p.G168fs . . 110.0 51.0 137.0 0.0 . 22 . 0.463636 0 none . . PASS Atlas-Indel,Pindel PARD3B 117583 hgsc.bcm.edu hg19 2 205550903 205550903 + Splice_Site DEL G G - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . PARD3B NM_057177 exon2 c.121-2G>- . . . 103.0 25.0 58.0 0.0 . 314 . 0.242718 0 none . . PASS Atlas-Indel,Pindel DYSF 8291 hgsc.bcm.edu hg19 2 71740432 71740437 + In_Frame_Del DEL TACTCT TACTCT - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 TACTCT TACTCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . DYSF NM_001130987 exon6 c.522_527del p.174_176del . . 156.0 38.0 206.0 0.0 . 536 . 0.24359 0 none . . PASS Atlas-Indel,Pindel TTC21A 199223 hgsc.bcm.edu hg19 3 39175775 39175776 + Frame_Shift_Ins INS - - CCAT novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . TTC21A NM_145755 exon21 c.2839_2840insCCAT p.A947fs . . 81.0 25.0 84.0 0.0 . 96 . 0.309 . none . . PASS Pindel HIVEP2 3097 hgsc.bcm.edu hg19 6 143094459 143094460 + Frame_Shift_Del DEL CT CT - novel TCGA-2Z-A9J3-01A-12D-A382-10 TCGA-2Z-A9J3-10A-01D-A385-10 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 32cc4455-b4d6-47b7-8121-6a41d2f6aec3 72bef80f-14ac-48e0-b629-117038e12a5c . HIVEP2 NM_006734 exon5 c.1417_1418del p.473_473del . . 62.0 14.0 76.0 0.0 . 225 . 0.226 . none . . PASS Pindel