Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NBPF1	55672	broad.mit.edu	37	1	16891326	16891326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	.	.	.	.	TGATCTTCTTCCC	.	14	4	20	0	.	2	2	0	0	0
CLCA1	1179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	86934706	86934706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CLCA1-91	NM_001285	exon1	c.G52A	p.G18R	CTAGAAGGGGCCC	.	87	41	68	0	.	0	0	0	0	0
LCE1C	353133	hgsc.bcm.edu	37	1	152777877	152777877	+	Silent	SNP	G	G	A	rs138242706		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	LCE1C-90	NM_178351	exon2	c.C78T	p.T26T	CTTTGGGGTGGGG	.	198	18	50	0	G|1.000;A|0.000	0	0	0	0	0
IVL	3713	broad.mit.edu	37	1	152883269	152883269	+	Silent	SNP	A	A	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	IVL-93	NM_005547	exon2	c.A996G	p.Q332Q	GGGGCAACTGGAG	.	205	12	58	2	.	0	0	0	0	0
DUSP23	54935	hgsc.bcm.edu	37	1	159751066	159751066	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DUSP23-226	NM_017823	exon2	c.A176T	p.H59L	CCCTGCACCGCCT	.	183	78	3	0	.	658	287	364	6	1
NFASC	23114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204985554	204985554	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	NFASC-139	NM_001005388	exon30	c.G3610T	p.E1204X	TTCAATGAAGACG	.	310	34	89	0	.	0	0	0	0	0
CAPN2	824	broad.mit.edu	37	1	223900400	223900400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CAPN2-523	NM_001748	exon1	c.T58C	p.S20P	CTGGGCTCCCACG	.	227	14	20	1	.	0	0	0	0	0
CUL2	8453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	35360197	35360197	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CUL2-229	NM_001198778	exon2	c.C106G	p.L36V	TCAAAAGTTTGTT	.	173	41	116	0	.	0	0	0	0	0
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70404893	70404893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TET1-663	NM_030625	exon4	c.G2407T	p.A803S	AAAAACGCTATGA	.	84	10	102	0	.	0	0	0	0	0
C10orf129	142827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	96967018	96967018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	C10orf129-90	NM_207321	exon4	c.C457A	p.Q153K	CGCTATCAATTAC	.	94	20	53	0	.	0	0	0	0	0
PDZD7	79955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	102783355	102783355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PDZD7-136	NM_001195263	exon4	c.T380C	p.L127P	ACGCACAGGCCAG	.	31	13	13	0	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1078339	1078339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MUC2-90	NM_002457	exon5	c.C626T	p.P209L	AGGATCCCGAGGA	.	224	60	73	0	.	0	0	0	0	0
PDE3B	5140	hgsc.bcm.edu	37	11	14666027	14666027	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PDE3B-90	NM_000922	exon1	c.C406G	p.L136V	TGCTTCCTCACCC	.	146	52	10	0	.	0	0	0	0	0
OR4X1	390113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	48285602	48285602	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	OR4X1-71	NM_001004726	exon1	c.T190G	p.L64V	AGCTACTTATCCT	.	156	18	66	0	.	0	0	0	0	0
SLC43A3	29015	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57182149	57182149	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SLC43A3-90	NM_017611	exon11	c.C999T	p.P333P	ATTCCAGGGGGCA	.	182	63	60	1	.	0	0	0	0	0
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118373932	118373932	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MLL-1255	NM_001197104	exon27	c.A7325C	p.E2442A	TCAAAGAAAAGCA	.	87	34	96	0	.	0	0	0	0	0
HINFP	25988	broad.mit.edu;bcgsc.ca	37	11	119001447	119001447	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	HINFP-320	NM_015517	exon4	c.C194G	p.S65C	AATTCTCCTGCTT	.	137	54	70	2	.	0	0	0	0	0
SCNN1A	6337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6457064	6457064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SCNN1A-90	NM_001159576	exon12	c.C2162T	p.S721F	CAGGTGGAGGAAC	.	95	31	34	0	.	0	0	0	0	0
KLRC4-KLRK1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	10539523	10539523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_001199805	exon8	c.A127G	p.K43E	TGCTTTTGACTAC	.	85	32	47	0	.	0	0	0	0	0
PTPRO	5800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	15673198	15673198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PTPRO-271	NM_002848	exon10	c.G1843A	p.D615N	TGGGGAGATCCAG	.	262	78	96	0	.	0	0	0	0	0
DDN	23109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49391677	49391677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DDN-90	NM_015086	exon2	c.G982A	p.G328S	CGCTACCACTGTT	.	53	11	20	0	.	0	0	0	0	0
METAP2	10988	broad.mit.edu	37	12	95867964	95867964	+	Silent	SNP	T	T	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	METAP2-90	NM_006838	exon1	c.T9G	p.G3G	GGCGGGTGTGGAG	.	166	27	41	4	.	1	1	0	0	0
FAM216A	29902	hgsc.bcm.edu	37	12	110906786	110906786	+	Missense_Mutation	SNP	C	C	T	rs202079205		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_013300	exon1	c.C106T	p.P36S	GCAGAGCCGCCCG	.	25	12	1	0	.	1	0	1	0	0
RAD9B	144715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	110969392	110969392	+	Silent	SNP	A	A	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	RAD9B-228	NM_152442	exon12	c.A1248G	p.K416K	CAGGAAAGAATTT	.	27	9	12	0	.	4	4	0	0	0
RBM19	9904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	114385205	114385205	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	RBM19-95	NM_001146699	exon11	c.C1341T	p.F447F	GGTGATGAATGCA	.	278	64	73	0	.	3	0	3	0	0
BRI3BP	140707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	125509640	125509640	+	Silent	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	BRI3BP-91	NM_080626	exon3	c.C420A	p.S140S	CTTGTCCCTGACC	.	85	32	25	0	.	15	8	7	0	0
N6AMT2	221143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	21306119	21306119	+	Silent	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	N6AMT2-68	NM_174928	exon4	c.A369G	p.P123P	GTCCAATGGATTA	.	82	37	83	0	.	4	0	4	0	0
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99092299	99092299	+	Splice_Site	SNP	T	T	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	FARP1-290	NM_005766	exon22	c.2516+2T>A	.	GCCAGGTAACTCG	.	70	13	27	0	.	1	0	1	0	0
ARHGEF40	55701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21543565	21543565	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ARHGEF40-228	NM_018071	exon4	c.G1525C	p.D509H	AAAGGGGACAACA	.	227	62	108	0	.	0	0	0	0	0
KIAA1737	85457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	77580238	77580238	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	KIAA1737-90	NM_033426	exon4	c.C777T	p.F259F	GACCTTCGCTTCC	.	48	24	26	0	.	0	0	0	0	0
ITPK1	3705	hgsc.bcm.edu	37	14	93408017	93408017	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ITPK1-115	NM_001142593	exon11	c.G1134A	p.A378A	GCCGCCCGCGTCG	.	14	12	0	0	.	1	0	1	0	0
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40915310	40915310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CASC5-660	NM_170589	exon11	c.G2926T	p.V976F	AATCATGTTGAAC	.	88	21	58	0	.	0	0	0	0	0
HDC	3067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	50535435	50535435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	HDC-156	NM_002112	exon11	c.G1147A	p.E383K	CCATTTCAGTACC	.	155	62	106	0	.	0	0	0	0	0
MYO5C	55930	hgsc.bcm.edu	37	15	52500781	52500781	+	Silent	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MYO5C-145	NM_018728	exon36	c.C4356A	p.L1452L	GCAATTGAGAAAA	.	108	9	58	0	.	0	0	0	0	0
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75982866	75982866	+	Silent	SNP	G	G	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CSPG4-229	NM_001897	exon3	c.C540G	p.L180L	CCGGAGGAGGCTG	.	62	20	43	0	.	0	0	0	0	0
MEF2A	4205	hgsc.bcm.edu	37	15	100211761	100211761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MEF2A-455	NM_005587	exon5	c.C295T	p.P99S	GACAGCCCAGACC	.	37	7	23	0	.	2	2	0	0	0
HMOX2	3163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4557977	4557977	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	HMOX2-90	NM_001127205	exon4	c.C468T	p.R156R	CACCCGCTACATG	.	216	85	80	0	.	107	43	64	0	0
RRN3	54700	broad.mit.edu	37	16	15188060	15188060	+	Missense_Mutation	SNP	G	G	A	rs201504364		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	RRN3-91	NM_018427	exon1	c.C31T	p.P11S	CTCCCGGCAAACG	.	187	13	36	0	G|0.997;A|0.003	0	0	0	0	0
RRN3	54700	broad.mit.edu	37	16	15188066	15188066	+	Missense_Mutation	SNP	G	G	A	rs200006712		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	RRN3-91	NM_018427	exon1	c.C25T	p.R9C	GCAAACGCGTGTG	.	180	11	34	0	G|0.997;A|0.003	0	0	0	0	0
LAT	27040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	28996234	28996234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	LAT-44	NM_001014989	exon1	c.G52A	p.A18T	GGGGGGGCCAGCA	.	91	29	16	0	.	0	0	0	0	0
PRRT2	112476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	29825753	29825753	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PRRT2-68	NM_001256442	exon3	c.A979C	p.I327L	GTCCTCATCATCA	.	59	18	18	0	.	1	0	1	0	0
ESRP2	80004	broad.mit.edu	37	16	68267896	68267896	+	Splice_Site	SNP	C	C	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ESRP2-91	NM_024939	exon4	c.441+1G>C	.	AGCATACCTTCCT	.	98	28	44	2	.	0	0	0	0	0
DHX38	9785	broad.mit.edu	37	16	72141342	72141342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DHX38-227	NM_014003	exon20	c.G2704A	p.G902R	TCCCTCGGGGTGC	.	118	5	25	0	.	5	5	0	0	0
TAF1C	9013	broad.mit.edu	37	16	84214979	84214979	+	Silent	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TAF1C-91	NM_005679	exon10	c.G1197T	p.V399V	GGTCAGCACCCGA	.	147	8	15	0	.	0	0	0	0	0
TNK1	8711	hgsc.bcm.edu	37	17	7287558	7287558	+	Silent	SNP	T	T	C	rs17853470		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TNK1-547	NM_003985	exon6	c.T852C	p.P284P	CCGCCCTATCCCC	.	9	4	0	0	T|0.979;C|0.021	0	0	0	0	0
LYZL6	57151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	34263772	34263772	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	LYZL6-90	NM_020426	exon3	c.G364C	p.G122R	TCATCCCCCGTGC	.	115	61	20	0	.	0	0	0	0	0
ARHGAP23	57636	hgsc.bcm.edu	37	17	36666551	36666551	+	Silent	SNP	T	T	C	rs62074752		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ARHGAP23-205	NM_001199417	exon24	c.T3819C	p.D1273D	GGGGGATGAGGCG	.	12	12	0	0	C|0.823;G|0.000;T|0.177	0	0	0	0	0
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274238	39274238	+	Silent	SNP	A	A	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_033059	exon1	c.T330C	p.C110C	GGGGCGACAGCAG	.	116	14	27	0	.	0	0	0	0	0
KRTAP4-6	81871	hgsc.bcm.edu	37	17	39296467	39296467	+	Silent	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_030976	exon1	c.A273G	p.R91R	CTGGGGTCTGCAG	.	131	9	15	0	.	0	0	0	0	0
KRTAP4-3	85290	bcgsc.ca	37	17	39324104	39324104	+	Silent	SNP	A	A	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	KRTAP4-3-22	NM_033187	exon1	c.T321C	p.S107S	GCAACTAGAAATG	.	317	20	34	0	.	0	0	0	0	0
TTC25	83538	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40113444	40113444	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TTC25-23	.	.	.	.	GAGGAAAACCAAC	.	145	59	49	0	.	1	0	1	0	0
TUBG1	7283	broad.mit.edu;bcgsc.ca	37	17	40765685	40765685	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TUBG1-91	NM_001070	exon7	c.C627T	p.A209A	CACAGCCCTGAAC	.	200	8	65	0	.	33	33	0	0	0
SOST	50964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41835944	41835944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SOST-90	NM_025237	exon1	c.A166G	p.M56V	GGTTCATGGTCTT	.	87	26	22	0	.	0	0	0	0	0
HDAC5	10014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42171119	42171119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	HDAC5-227	NM_001015053	exon4	c.C181T	p.R61W	CCCCCCGTAGCTC	.	156	73	26	0	.	0	0	0	0	0
NPB	256933	hgsc.bcm.edu	37	17	79860378	79860378	+	Silent	SNP	A	A	G	rs182909729		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_148896	exon1	c.A225G	p.Q75Q	GCTGCAACTGCAC	.	14	6	1	0	A|0.994;G|0.006	3	1	2	0	0
UTS2R	2837	broad.mit.edu	37	17	80333066	80333066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	UTS2R-153	NM_018949	exon1	c.C866A	p.A289E	CGCTGGCGCCGCG	.	217	16	16	1	.	0	0	0	0	0
ZNF516	9658	broad.mit.edu	37	18	74154244	74154244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ZNF516-69	NM_014643	exon3	c.C767A	p.A256D	CTGAAGGCCTGGC	.	113	6	19	2	.	0	0	0	0	0
WDR18	57418	hgsc.bcm.edu	37	19	991962	991962	+	Silent	SNP	C	C	T	rs200830437		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	WDR18-91	NM_024100	exon8	c.C939T	p.V313V	CCCAGTCACCAAT	.	42	9	1	0	C|0.999;T|0.001	0	0	0	0	0
DOT1L	84444	hgsc.bcm.edu	37	19	2210451	2210451	+	Missense_Mutation	SNP	C	C	G	rs138206172		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DOT1L-132	NM_032482	exon13	c.C1058G	p.A353G	GCAACGCGGCCAC	.	52	11	3	1	C|0.999;G|0.001	0	0	0	0	0
OR7E24	26648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9362181	9362181	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	OR7E24-47	NM_001079935	exon1	c.G462C	p.M154I	CATCATGAACCCA	.	124	36	51	0	.	0	0	0	0	0
MAN2B1	4125	broad.mit.edu;bcgsc.ca	37	19	12760979	12760979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MAN2B1-94	NM_000528	exon17	c.C2104T	p.R702C	ACAGGCGAACCAC	.	166	8	43	0	.	78	75	3	0	0
ZNF571	51276	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	38056037	38056037	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ZNF571-90	NM_016536	exon4	c.C1293T	p.G431G	TTGTTTGCCACAA	.	34	20	66	0	.	0	0	0	0	0
CAPN12	147968	hgsc.bcm.edu	37	19	39226803	39226803	+	Silent	SNP	G	G	A	rs201698633		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CAPN12-91	NM_144691	exon12	c.C1530T	p.G510G	CTCGTCGCCGGCG	.	37	5	1	0	G|0.992;A|0.008	0	0	0	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48183862	48183862	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	GLTSCR1-48	NM_015711	exon6	c.G1435C	p.A479P	GCCCCGGCGGTCC	.	44	12	1	0	.	0	0	0	0	0
PRR12	57479	hgsc.bcm.edu	37	19	50100554	50100554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PRR12-70	NM_020719	exon4	c.G2962A	p.D988N	GCTTATGATCCCT	.	36	26	0	0	.	0	0	0	0	0
IGLON5	402665	hgsc.bcm.edu	37	19	51831097	51831097	+	Silent	SNP	C	C	A	rs200107403		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_001101372	exon7	c.C879A	p.A293A	TCGCGCCGCCAAC	.	60	21	0	0	C|0.991;A|0.009	0	0	0	0	0
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	50850682	50850682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	NRXN1-92	NM_001135659	exon7	c.C1003A	p.Q335K	TGCTTTGAATGGG	.	79	34	66	0	.	0	0	0	0	0
C2orf81	388963	hgsc.bcm.edu	37	2	74642235	74642235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_001145054	exon4	c.G988A	p.D330N	GCACATCCGAGTG	.	95	50	2	0	.	0	0	0	0	0
ANKRD30BL	554226	broad.mit.edu	37	2	132919099	132919099	+	RNA	SNP	C	C	T	rs199974298		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	.	.	.	.	TGTCGTCTTCTTC	.	146	10	67	0	C|0.991;T|0.009	0	0	0	0	0
ANKRD30BL	554226	broad.mit.edu	37	2	132919171	132919171	+	RNA	SNP	A	A	G	rs199695856		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	.	.	.	.	ATCCCCATGGTGA	.	356	20	103	1	.	0	0	0	0	0
ANKRD30BL	554226	broad.mit.edu	37	2	132919192	132919192	+	RNA	SNP	G	G	A	rs111295191		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	.	.	.	.	AGAGTCGTTGTTG	.	384	15	103	1	.	0	0	0	0	0
SPOPL	339745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	139322375	139322375	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SPOPL-92	NM_001001664	exon9	c.A935G	p.H312R	ATTTGCACAGTGC	.	176	29	80	0	.	0	0	0	0	0
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	167055820	167055820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SCN9A-181	NM_002977	exon27	c.G5296A	p.D1766N	AGTCATCCTCACT	.	189	10	142	0	.	0	0	0	0	0
TTN	7273	broad.mit.edu	37	2	179499952	179499952	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TTN-636	NM_001267550	exon228	c.C41964G	p.I13988M	CTCTGAGATTTCT	.	147	5	73	0	.	0	0	0	0	0
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233671361	233671361	+	Silent	SNP	T	T	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	GIGYF2-28	NM_001103147	exon17	c.T1863A	p.P621P	CCCTCCTCATATG	.	54	35	39	0	.	0	0	0	0	0
IQCA1	79781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	237272540	237272540	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	IQCA1-23	NM_001270585	exon15	c.G1776A	p.L592L	ATGGACCAGCATT	.	187	100	94	1	.	0	0	0	0	0
LRRN4	164312	hgsc.bcm.edu	37	20	6033147	6033147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	LRRN4-93	NM_152611	exon2	c.A299G	p.Q100R	TGCAGCTGCTCCA	.	31	13	0	0	.	0	0	0	0	0
NCOA6	23054	broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	NCOA6-292	NM_014071	exon7	c.G807A	p.Q269Q	CTGCTGCTGTTGT	.	103	3	40	1	.	0	0	0	0	0
KCNK15	60598	broad.mit.edu	37	20	43378866	43378866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	KCNK15-90	NM_022358	exon2	c.G380T	p.S127I	TCCAGAGCCTGGG	.	165	5	13	0	.	2	2	0	0	0
ARFGAP1	55738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61918934	61918934	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ARFGAP1-91	NM_175609	exon14	c.T954G	p.S318R	CCACAGTTATCAG	.	76	26	35	0	.	10	0	10	0	0
HELZ2	85441	hgsc.bcm.edu	37	20	62197379	62197379	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_001037335	exon9	c.C2796T	p.I932I	CTCACGGATGAAG	.	78	32	5	0	.	0	0	0	0	0
ADAMTS5	11096	hgsc.bcm.edu	37	21	28338045	28338045	+	Silent	SNP	A	A	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ADAMTS5-229	NM_007038	exon1	c.T666A	p.A222A	CGCCGGAGCATGC	.	73	33	0	0	.	0	0	0	0	0
TTC3	7267	hgsc.bcm.edu;bcgsc.ca	37	21	38519809	38519809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TTC3-590	NM_001001894	exon22	c.G1922A	p.C641Y	AAGAATGCAAGTT	.	56	4	38	0	.	0	0	0	0	0
PRDM15	63977	hgsc.bcm.edu	37	21	43221434	43221434	+	Missense_Mutation	SNP	G	G	A	rs147616045		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PRDM15-90	NM_022115	exon31	c.C4490T	p.A1497V	TGCTCCGCCTGCA	.	24	10	0	0	G|1.000;A|0.000	0	0	0	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020576	46020576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_198689	exon1	c.G55A	p.V19I	AGCCGCGTCTGCC	.	200	9	38	0	.	1	0	1	0	0
GSC2	2928	hgsc.bcm.edu	37	22	19137290	19137290	+	Silent	SNP	G	G	A	rs201641909		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	GSC2-68	NM_005315	exon2	c.C399T	p.F133F	TTCGCTGAAGATG	.	17	5	1	0	G|0.999;A|0.001	0	0	0	0	0
PTPRG	5793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	62189090	62189090	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PTPRG-419	NM_002841	exon12	c.G1621C	p.A541P	CCGACGGCCGCCT	.	99	67	32	0	.	0	0	0	0	0
KIAA2018	205717	hgsc.bcm.edu;ucsc.edu	37	3	113376122	113376122	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	KIAA2018-93	NM_001009899	exon7	c.G4407A	p.Q1469Q	CTGCTGCTGCTGC	.	98	17	24	0	.	32	32	0	0	0
KIAA2018	205717	hgsc.bcm.edu	37	3	113376128	113376128	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	KIAA2018-93	NM_001009899	exon7	c.G4401A	p.Q1467Q	CTGCTGCTGCTGC	.	93	22	21	0	.	924	911	13	0	0
ROPN1B	152015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	125690910	125690910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ROPN1B-90	NM_001012337	exon2	c.G13T	p.D5Y	CAGACAGATAAGC	.	86	26	30	0	.	0	0	0	0	0
PPP2R3A	5523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	135825108	135825108	+	Silent	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PPP2R3A-662	NM_002718	exon13	c.T3273C	p.A1091A	TGCCGCTGAGGAG	.	126	41	69	0	.	9	8	1	0	0
FAM194A	131831	broad.mit.edu	37	3	150421590	150421590	+	Silent	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	FAM194A-93	NM_152394	exon1	c.A96G	p.E32E	CACCTCTTCCTCC	.	128	12	25	2	.	1	0	1	0	0
YEATS2	55689	broad.mit.edu	37	3	183525842	183525842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	YEATS2-138	NM_018023	exon29	c.G4036T	p.A1346S	CCCGTGGCACTCC	.	140	6	42	0	.	7	7	0	0	0
DGKG	1608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	185960324	185960324	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DGKG-714	NM_001346	exon20	c.A1795T	p.R599X	TCTCTCTCATCAC	.	111	31	27	0	.	0	0	0	0	0
MUC20	200958	broad.mit.edu	37	3	195447900	195447900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_152673	exon1	c.G22A	p.A8T	GGTCTGGCTCTGC	.	92	5	39	0	.	0	0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195505794	195505794	+	Silent	SNP	T	T	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MUC4-90	NM_018406	exon2	c.A12657C	p.T4219T	GTGACCTGTGGAT	.	616	22	149	2	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195507237	195507237	+	Silent	SNP	G	G	A	rs199776180		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MUC4-90	NM_018406	exon2	c.C11214T	p.S3738S	ACCTGTGGATGCT	.	720	24	171	0	.	0	0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195509340	195509340	+	Silent	SNP	G	G	A	rs200269750	alternate_allele	TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MUC4-90	NM_018406	exon2	c.C9111T	p.H3037H	GGTGGCGTGACCG	.	760	9	149	0	.	0	0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195512487	195512487	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MUC4-90	NM_018406	exon2	c.C5964T	p.T1988T	AGCGTCGGTGACA	.	458	13	110	0	.	0	0	0	0	0
PPP2R2C	5522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	6335365	6335365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PPP2R2C-1084	NM_181876	exon7	c.A884G	p.Y295C	AGCATGTAGCGGC	.	128	77	59	0	.	3	0	3	0	0
ATP10D	57205	broad.mit.edu	37	4	47593174	47593174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ATP10D-93	NM_020453	exon23	c.G4057T	p.A1353S	AGAGGGGCTGGAA	.	90	4	77	0	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536238	88536238	+	Silent	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DSPP-90	NM_014208	exon5	c.T2424C	p.D808D	CAGTGATAGCAGT	.	500	32	193	2	.	0	0	0	0	0
DSPP	1834	hgsc.bcm.edu	37	4	88536436	88536436	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DSPP-90	NM_014208	exon5	c.C2622T	p.S874S	CAGCAGCAACAGC	.	371	30	131	0	.	0	0	0	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	169688	169688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PLEKHG4B-228	NM_052909	exon12	c.G2642T	p.G881V	CCGTGGGCCGCAG	.	64	4	24	1	.	0	0	0	0	0
SLC9A3	6550	broad.mit.edu	37	5	475168	475168	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SLC9A3-90	NM_004174	exon16	c.C2331T	p.P777P	CTCCCCGGGAGAC	.	169	4	20	0	.	0	0	0	0	0
FAM105A	54491	broad.mit.edu;bcgsc.ca	37	5	14601482	14601482	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	FAM105A-91	NM_019018	exon4	c.G279A	p.E93E	GGCAGAGGTTGAT	.	212	47	96	2	.	0	0	0	0	0
SHROOM1	134549	hgsc.bcm.edu	37	5	132161622	132161622	+	Missense_Mutation	SNP	C	C	G	rs201865788		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SHROOM1-91	NM_133456	exon1	c.G211C	p.G71R	CGGGGCCCGGGCC	.	33	17	1	0	.	0	0	0	0	0
NR3C1	2908	broad.mit.edu	37	5	142678363	142678363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	NR3C1-92	NM_001024094	exon6	c.C1765A	p.H589N	CCAGGTGTAAGTT	.	90	4	53	0	.	0	0	0	0	0
TLX3	30012	hgsc.bcm.edu	37	5	170736390	170736390	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TLX3-658	NM_021025	exon1	c.G21A	p.A7A	CAGCGCGCAGACC	.	45	21	0	0	.	0	0	0	0	0
DBN1	1627	broad.mit.edu	37	5	176885609	176885609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DBN1-587	NM_080881	exon13	c.C1232T	p.A411V	GGAGGCGCCTGTG	.	129	4	23	0	.	8	8	0	0	0
OR10C1	442194	hgsc.bcm.edu;broad.mit.edu	37	6	29408232	29408232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	OR10C1-22	NM_013941	exon1	c.C440T	p.A147V	GGTCGGCGTGGGC	.	61	4	26	0	.	0	0	0	0	0
TUBB	203068	broad.mit.edu	37	6	30692075	30692075	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TUBB-91	NM_178014	exon4	c.G1236C	p.E412D	GGCTGAGAGCAAC	.	132	9	56	0	.	1395	1395	0	0	0
ABCC10	89845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43412898	43412898	+	Missense_Mutation	SNP	A	A	G	rs200602946		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ABCC10-96	NM_001198934	exon14	c.A2876G	p.N959S	CCCCCAATGGCTC	.	674	260	70	0	A|0.999;G|0.000	7	3	4	0	0
CD2AP	23607	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	47471115	47471115	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CD2AP-92	NM_012120	exon2	c.A104T	p.E35V	AGGAGGAAGGGTG	.	384	30	51	0	.	0	0	0	0	0
PTCHD4	442213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	48036108	48036108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_001013732	exon1	c.A284G	p.D95G	GACTGGTCCAGGG	.	377	19	41	0	.	2	2	0	0	0
ZNF451	26036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	56989656	56989656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ZNF451-93	NM_001031623	exon4	c.G311A	p.R104K	CATTCAGAGTATG	.	253	16	102	0	.	0	0	0	0	0
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	64394128	64394128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PHF3-229	NM_015153	exon3	c.G505A	p.A169T	TCTACTGCTAAAG	.	233	92	139	0	.	0	0	0	0	0
IBTK	25998	hgsc.bcm.edu;broad.mit.edu	37	6	82883139	82883139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	IBTK-92	NM_015525	exon27	c.A3742G	p.T1248A	CTGGGGTACCATG	.	52	3	34	0	.	3	3	0	0	0
MAP3K5	4217	hgsc.bcm.edu	37	6	137113272	137113272	+	Silent	SNP	G	G	A	rs142989545		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MAP3K5-982	NM_005923	exon1	c.C24T	p.G8G	AGTGATGCCCTCG	.	40	16	0	0	G|0.988;A|0.012	0	0	0	0	0
GPR126	57211	broad.mit.edu	37	6	142741042	142741042	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	GPR126-91	NM_198569	exon22	c.C3120T	p.F1040F	CATGTTCATTGTG	.	190	3	112	0	.	0	0	0	0	0
MAP3K4	4216	hgsc.bcm.edu	37	6	161413041	161413041	+	Silent	SNP	G	G	A	rs78823261		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MAP3K4-548	NM_006724	exon1	c.G78A	p.P26P	GCCGCCGCCACCG	.	21	10	0	0	.	0	0	0	0	0
UNC93A	54346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	167709627	167709627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	UNC93A-90	NM_018974	exon3	c.C377T	p.A126V	AGAAGGCGGGAAA	.	270	109	105	0	.	2	0	2	0	0
PDCD2	5134	hgsc.bcm.edu	37	6	170893454	170893454	+	Silent	SNP	C	C	T	rs200023629		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PDCD2-227	NM_002598	exon1	c.G216A	p.P72P	GGCGTCCGGGCGG	.	50	21	0	0	C|0.997;T|0.003	0	0	0	0	0
TRA2A	29896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23547073	23547073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TRA2A-91	NM_013293	exon5	c.C607T	p.P203S	GTGTTGGTGTGTG	.	102	37	40	0	.	6	6	0	0	0
VWC2	375567	hgsc.bcm.edu	37	7	49815181	49815181	+	Silent	SNP	C	C	T	rs201551578		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	VWC2-514	NM_198570	exon2	c.C150T	p.H50H	TGAGCACGCCTCT	.	41	25	0	0	C|0.997;T|0.003	0	0	0	0	0
ARPC1B	10095	hgsc.bcm.edu	37	7	98990335	98990335	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ARPC1B-90	NM_005720	exon8	c.C825T	p.A275A	CGCCGCCGCGGGG	.	147	84	5	0	.	650	259	391	0	0
FAM185A	222234	broad.mit.edu	37	7	102389716	102389716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_001145269	exon1	c.G62T	p.R21L	AGGTCCGACTGTG	.	266	6	19	0	.	0	0	0	0	0
OPN1SW	611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128415147	128415147	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	OPN1SW-68	NM_001708	exon2	c.G414A	p.K138K	GAAGGGCTTACAG	.	197	54	62	0	.	0	0	0	0	0
CLEC2L	154790	hgsc.bcm.edu	37	7	139208786	139208786	+	Missense_Mutation	SNP	C	C	A	rs111447865		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_001080511	exon1	c.C113A	p.A38D	CTGAGGCCCGCGG	.	23	10	0	0	A|1.000;|0.000	0	0	0	0	0
AGAP3	116988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150839014	150839014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	AGAP3-92	NM_031946	exon14	c.G1834A	p.V612M	GTGGTGGTGTCCC	.	327	124	88	0	.	16	12	4	0	0
RHEB	6009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	151188050	151188050	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	RHEB-910	NM_005614	exon2	c.T103A	p.Y35N	GATCGTAGGAGTC	.	87	5	48	0	.	6	6	0	0	0
SGK223	0	broad.mit.edu	37	8	8239069	8239069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_001080826	exon1	c.G189T	p.R63S	CTCAGGCCTGGGA	.	129	9	14	0	.	0	0	0	0	0
ADAM18	8749	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	39550201	39550201	+	Splice_Site	SNP	T	T	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ADAM18-228	NM_014237	exon17	c.1902+2T>A	.	AAGGGGTAAGTCA	.	189	67	119	1	.	0	0	0	0	0
LRRCC1	85444	ucsc.edu	37	8	86057688	86057688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	LRRCC1-90	NM_033402	exon19	c.T3041C	p.M1014T	AAACAATGGAAGC	.	363	2	258	0	.	16	16	0	0	0
TRAPPC9	83696	hgsc.bcm.edu	37	8	140744445	140744445	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TRAPPC9-228	NM_031466	exon22	c.A3350C	p.D1117A	AGCACATCTGTAA	.	27	12	0	0	.	0	0	0	0	0
C9orf66	157983	hgsc.bcm.edu	37	9	214741	214741	+	Missense_Mutation	SNP	C	C	T	rs200440314		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	C9orf66-514	NM_152569	exon1	c.G656A	p.R219Q	CCTCCTCGCCCGC	.	14	10	0	0	C|0.997;T|0.003	0	0	0	0	0
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	8504321	8504321	+	Missense_Mutation	SNP	G	G	A	rs200847027		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PTPRD-912	NM_130392	exon12	c.C1762T	p.R588C	GGGAGCGTGCAGC	.	139	8	76	0	G|0.999;A|0.000	0	0	0	0	0
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37745145	37745145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	FRMPD1-159	NM_014907	exon16	c.G3116A	p.G1039E	CTCAAGGAGACAC	.	47	18	33	0	.	0	0	0	0	0
PRKACG	5568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	71628295	71628295	+	Silent	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PRKACG-1061	NM_002732	exon1	c.C714T	p.P238P	GTAGAAGGGTGGG	.	96	34	35	0	.	0	0	0	0	0
SPATA31C1	441452	hgsc.bcm.edu;ucsc.edu	37	9	90534184	90534184	+	Silent	SNP	C	C	T	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_001145124	exon2	c.C204T	p.S68S	TGTCTCCCAGCGT	.	499	149	120	0	.	0	0	0	0	0
NIPSNAP3A	25934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	107521616	107521616	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	NIPSNAP3A-90	NM_015469	exon6	c.A741C	p.K247N	ACTGAAATAGTTT	.	85	24	63	0	.	3	3	0	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	113233740	113233740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SVEP1-75	NM_153366	exon16	c.G2902T	p.A968S	CTGATGCAAGCTG	.	152	16	88	0	.	0	0	0	0	0
MED27	9442	hgsc.bcm.edu;broad.mit.edu	37	9	134735980	134735980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MED27-69	NM_004269	exon8	c.C881T	p.P294L	CATGTCGGGGGAA	.	145	9	46	0	.	33	33	0	0	0
SDCCAG3	10807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139302279	139302279	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SDCCAG3-90	NM_001039707	exon4	c.A401C	p.K134T	TTTACCTTTGCAT	.	43	11	28	0	.	0	0	0	0	0
PRPS2	5634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	12840843	12840843	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PRPS2-130	NM_001039091	exon7	c.C894G	p.I298M	CATGATCTTGGCC	.	232	69	90	0	.	0	0	0	0	0
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	18919658	18919658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PHKA2-131	NM_000292	exon27	c.G2972T	p.G991V	GTGACTCCGGTAT	.	186	65	53	0	.	1	0	1	0	0
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	80001213	80001213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	BRWD3-134	NM_153252	exon7	c.C446T	p.A149V	TGCCTGGCAGAGG	.	303	98	204	0	.	0	0	0	0	0
SH3BGRL	6451	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	80532507	80532507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SH3BGRL-131	NM_003022	exon2	c.C70A	p.L24I	GATGTGCTTGGTT	.	244	79	164	2	.	2	0	2	0	0
HS6ST2	90161	hgsc.bcm.edu	37	X	132092310	132092310	+	Silent	SNP	C	C	A	rs201640022		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	HS6ST2-130	NM_001077188	exon2	c.G321T	p.L107L	GGAGCCCAGGTCC	.	33	16	0	0	C|0.996;A|0.004	0	0	0	0	0
PNCK	139728	broad.mit.edu	37	X	152938523	152938523	+	Silent	SNP	C	C	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PNCK-207	NM_001039582	exon2	c.G258T	p.L86L	CTTCAGCAGCAGC	.	227	5	46	0	.	0	0	0	0	0
FAM5B	57795	broad.mit.edu;bcgsc.ca	37	1	177242681	177242690	+	Frame_Shift_Del	DEL	GTCAGTTCTG	GTCAGTTCTG	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	GTCAGTTCTG	GTCAGTTCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	FAM5B-28	NM_021165	exon5	c.727_736del	p.243_246del	GACTCAGTCAGTT	.	186	18	127	0	.	0	0	0	0	0
DLAT	1737	broad.mit.edu	37	11	111904183	111904183	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DLAT-226	NM_001931	exon5	c.716delA	p.E239fs	GATGGGAAAAAAA	.	209	7	120	0	.	0	0	0	0	0
TCP11L2	255394	broad.mit.edu	37	12	106729801	106729811	+	Frame_Shift_Del	DEL	ATATGTTAGAC	ATATGTTAGAC	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	ATATGTTAGAC	ATATGTTAGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TCP11L2-93	NM_152772	exon8	c.961_962del	p.321_321del	AAATAAATATGTT	.	18	7	23	0	.	0	0	0	0	0
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu	37	16	72923790	72923790	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ZFHX3-72	NM_006885	exon4	c.3288delC	p.S1096fs	.	.	42	14	16	0	.	0	0	0	0	0
PHB	5245	hgsc.bcm.edu;bcgsc.ca	37	17	47489082	47489082	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PHB-90	NM_002634	exon3	c.208delC	p.R70fs	.	.	245	74	78	0	.	0	0	0	0	0
KCTD1	284252	hgsc.bcm.edu	37	18	24128223	24128225	+	In_Frame_Del	DEL	TCC	TCC	-	rs143299522	alternate_allele	TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	KCTD1-91	NM_001142730	exon1	c.276_278del	p.92_93del	.	.	11	10	0	0	TCC|0.976;-|0.024	0	0	0	0	0
B9D2	80776	hgsc.bcm.edu;broad.mit.edu	37	19	41869392	41869392	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	B9D2-69	NM_030578	exon2	c.33delA	p.I11fs	.	.	124	67	72	0	.	0	0	0	0	0
PPP4R1L	55370	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	56813334	56813337	+	RNA	DEL	AAAG	AAAG	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	AAAG	AAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PPP4R1L-226	.	.	.	.	.	.	46	22	28	0	.	0	0	0	0	0
OLIG1	116448	broad.mit.edu	37	21	34442709	34442717	+	In_Frame_Del	DEL	TCCTCCACT	TCCTCCACT	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	TCCTCCACT	TCCTCCACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	OLIG1-446	NM_138983	exon1	c.157_165del	p.53_55del	TCCACCTCCTCCA	.	16	7	4	0	.	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	51890186	51890186	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PKHD1-603	NM_170724	exon32	c.4422delG	p.G1474fs	.	.	239	53	40	0	.	0	0	0	0	0
LRRC1	55227	broad.mit.edu	37	6	53764574	53764575	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	LRRC1-91	NM_018214	exon8	c.672_673del	p.224_225del	GCTGTGTTTAGAT	.	412	32	83	0	.	0	0	0	0	0
AGR3	155465	broad.mit.edu	37	7	16901068	16901068	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	AGR3-90	NM_176813	exon6	c.307delG	p.E103fs	TGGTTTCATGCTA	.	207	9	116	0	.	0	0	0	0	0
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	86577110	86577110	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	KIAA1324L-97	NM_001142749	exon3	c.439delT	p.S147fs	.	.	178	64	73	0	.	0	0	0	0	0
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	152012386	152012386	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MLL3-1398	NM_170606	exon4	c.427delA	p.S143fs	.	.	144	52	87	0	.	0	0	0	0	0
CIZ1	25792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	130947865	130947865	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CIZ1-92	NM_001257975	exon5	c.639delA	p.K213fs	.	.	118	36	45	0	.	0	0	0	0	0
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	151808889	151808890	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	GABRQ-133	NM_018558	exon2	c.200_201del	p.67_67del	.	.	159	56	70	0	.	0	0	0	0	0
CUX2	23316	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	111785758	111785759	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CUX2-140	NM_015267	exon22	c.4090_4091insA	p.Q1364fs	.	.	69	24	40	0	.	0	0	0	0	0
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	135475736	135475737	+	Frame_Shift_Ins	INS	-	-	AAAAT	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	GPR112-183	NM_153834	exon18	c.8077_8078insAAAAT	p.N2693fs	.	.	58	16	52	0	.	0	0	0	0	0
TGM7	116179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43585144	43585145	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TGM7-92	NM_052955	exon3	c.G201A	p.P68T	TGACGGCTTGGGT	.	62.0	14.0	44.0	0.0	.	0	0	0	0	0
RERE	473	hgsc.bcm.edu	37	1	8419867	8419868	+	Missense_Mutation	DNP	CG	CG	TT	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	RERE-515	NM_012102	exon20	c.C3574A	p.R1192K	GCTCCCGCTCCTT	.	45.0	4.0	15.0	0.0	.	0	0	0	0	0