Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SKI	6497	hgsc.bcm.edu	37	1	2238153	2238153	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	SKI-838	NM_003036	exon7	c.G2136A	p.R712R	GCCGCGGGCCCGC	.	26	21	0	0	.	2	1	1	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12885289	12885289	+	Silent	SNP	G	G	T	rs78694969		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	.	NM_001146344	exon4	c.C822A	p.L274L	CTGGGAGAGATGC	.	31	3	29	0	T|1.000;|0.000	0	0	0	0	0
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27101241	27101241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ARID1A-584	NM_006015	exon18	c.A4523G	p.Y1508C	ATAATTATGCCAA	.	70	20	92	0	.	14	4	10	0	0
DLGAP3	58512	hgsc.bcm.edu	37	1	35331687	35331687	+	Silent	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	DLGAP3-71	NM_001080418	exon10	c.G2937A	p.L979L	CGGTCACAGCCTG	.	45	13	1	0	.	0	0	0	0	0
INADL	10207	broad.mit.edu	37	1	62271195	62271195	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	INADL-94	NM_176877	exon13	c.T1625A	p.M542K	AAGTAATGGTATG	.	49	4	68	0	.	0	0	0	0	0
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145567075	145567075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ANKRD35-95	NM_144698	exon12	c.C2923T	p.H975Y	AGGAATCATCTAC	.	142	38	165	0	.	2	2	0	0	0
GON4L	54856	broad.mit.edu	37	1	155733245	155733245	+	Silent	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	GON4L-93	NM_001037533	exon22	c.G4584A	p.E1528E	TTCTTCCTCCTCT	.	29	6	52	2	.	16	16	0	0	0
PKP1	5317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201285751	201285751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	PKP1-92	NM_001005337	exon4	c.G772A	p.D258N	TCCCAGGATGAGA	.	207	54	250	1	.	0	0	0	0	0
LEFTY1	10637	broad.mit.edu;bcgsc.ca	37	1	226075306	226075306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LEFTY1-90	NM_020997	exon3	c.C530A	p.A177D	TCGAAGGCCTTCC	.	82	21	60	1	.	7	5	2	0	0
TAF5L	27097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	229730727	229730727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	TAF5L-91	NM_014409	exon5	c.G1087A	p.D363N	ACATGTCTTCAGA	.	85	5	110	0	.	11	7	4	0	0
SH3BP5L	80851	hgsc.bcm.edu	37	1	249106348	249106348	+	Silent	SNP	G	G	C	rs202116012		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	SH3BP5L-90	NM_030645	exon7	c.C933G	p.A311A	ACCCTCGGCCCCC	.	22	17	0	0	G|0.991;C|0.008	10	0	10	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61833342	61833342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ANK3-107	NM_020987	exon37	c.G7297T	p.D2433Y	AAGAGTCATCAGA	.	111	18	102	0	.	0	0	0	0	0
MSS51	118490	broad.mit.edu;bcgsc.ca	37	10	75185982	75185982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	.	NM_001024593	exon5	c.G656A	p.G219E	GGCCGTCCTACAC	.	26	5	48	0	.	1	1	0	0	0
ENTPD7	57089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101421214	101421214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ENTPD7-91	NM_020354	exon3	c.C20A	p.S7Y	GTTTTTCCTACCT	.	61	16	71	0	.	0	0	0	0	0
DNMBP	23268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101715503	101715503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	DNMBP-233	NM_015221	exon4	c.C1728A	p.H576Q	TGAAAAGTGGCGT	.	55	8	67	0	.	5	2	3	0	0
CYP17A1	1586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104590667	104590667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CYP17A1-90	NM_000102	exon8	c.G1319A	p.R440H	CAGGAGCGAGGTC	.	151	31	177	0	.	1	1	0	0	0
CYP17A1	1586	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104592776	104592776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CYP17A1-90	NM_000102	exon5	c.C943A	p.L315M	AGGCCAGGGTCCA	.	265	60	248	1	.	2	0	2	0	0
GRK5	2869	broad.mit.edu;ucsc.edu	37	10	121212789	121212789	+	Splice_Site	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	GRK5-547	NM_005308	exon15	c.1674+1G>A	.	CGGCAGGTGAGAC	.	52	8	60	1	.	0	0	0	0	0
NLRP6	171389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	284253	284253	+	Missense_Mutation	SNP	A	A	G	rs150530901		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	NLRP6-583	NM_138329	exon6	c.A2225G	p.D742G	TCCCTGACGCGGT	.	87	25	60	0	A|1.000;G|0.000	0	0	0	0	0
CTSD	1509	hgsc.bcm.edu	37	11	1785082	1785082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CTSD-90	NM_001909	exon1	c.C8T	p.P3L	CTGGAGGGCTGCA	.	23	13	0	0	.	701	334	367	0	0
MRGPRX4	117196	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	18195097	18195097	+	Silent	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MRGPRX4-91	NM_054032	exon1	c.C294T	p.L98L	AATCCTCGTTTCT	.	187	33	235	1	.	0	0	0	0	0
LGALS12	85329	broad.mit.edu;bcgsc.ca	37	11	63283171	63283171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LGALS12-92	NM_001142535	exon8	c.C853A	p.Q285K	TACCCCCAGAGAT	.	31	5	50	1	.	0	0	0	0	0
LRP5	4041	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	68181318	68181318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LRP5-661	NM_002335	exon12	c.G2665T	p.V889L	GACTTCGTGATGG	.	67	23	59	1	.	9	4	5	0	0
VWF	7450	ucsc.edu;bcgsc.ca	37	12	6090996	6090996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	VWF-163	NM_000552	exon42	c.A7243C	p.T2415P	CATTGGTGGCAGT	.	211	39	160	3	.	0	0	0	0	0
DNAJC14	85406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56217194	56217194	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	DNAJC14-229	NM_032364	exon3	c.G1506C	p.E502D	CTCATACTCCTTT	.	86	15	76	0	.	6	1	5	0	0
DDX54	79039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113610195	113610195	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	DDX54-227	NM_024072	exon11	c.C1242T	p.S414S	GGGGAAGCTGTAG	.	215	72	175	0	.	75	35	40	0	0
RIMBP2	23504	broad.mit.edu	37	12	130926698	130926698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	RIMBP2-142	NM_015347	exon8	c.C1148T	p.T383M	AGCAGCGTGCACT	.	181	5	129	1	.	0	0	0	0	0
MIS18BP1	55320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45693181	45693181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MIS18BP1-90	NM_018353	exon11	c.G2609A	p.C870Y	GGTAAGCATTCTA	.	50	14	57	0	.	9	4	5	0	0
STOML1	9399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	74281093	74281093	+	Silent	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	STOML1-91	NM_001256672	exon4	c.T441C	p.F147F	GATGCGAAACTGG	.	71	15	89	0	.	15	3	12	0	0
LMAN1L	79748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75111060	75111060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LMAN1L-90	NM_021819	exon5	c.G499T	p.D167Y	CACAGGGATGGAG	.	68	24	56	0	.	0	0	0	0	0
ARMC5	79798	broad.mit.edu	37	16	31471290	31471290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ARMC5-24	NM_024742	exon1	c.G445T	p.V149L	ACCGAAGTGCGCA	.	27	3	29	0	.	4	2	2	0	0
NKD1	85407	broad.mit.edu;bcgsc.ca	37	16	50583404	50583404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	NKD1-226	NM_033119	exon3	c.C130T	p.P44S	CGCTGCCCGGGCG	.	179	43	67	1	.	0	0	0	0	0
MMP15	4324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	58079023	58079023	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MMP15-713	NM_002428	exon10	c.G1683C	p.E561D	CCAGGAGCACGTG	.	90	28	50	0	.	8	7	1	0	0
CLEC18B	497190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	74447559	74447559	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CLEC18B-90	NM_001011880	exon4	c.T472A	p.S158T	GGCTTGAGGTGGC	.	245	21	270	0	.	17	16	1	0	0
CTDNEP1	23399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7147902	7147902	+	Silent	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CTDNEP1-91	NM_001143775	exon7	c.T642C	p.L214L	GTTGAGAAGGGCT	.	58	18	63	0	.	320	204	116	0	0
CHD3	1107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7794342	7794342	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CHD3-228	NM_001005271	exon4	c.C646G	p.H216D	GATTACCACACGC	.	196	47	184	0	.	21	15	6	0	0
COX10	1352	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	13980321	13980321	+	Silent	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	COX10-226	NM_001303	exon3	c.A447G	p.Q149Q	GCTGCAAGTGTAT	.	123	20	121	1	.	17	8	9	0	0
MAPK7	5598	broad.mit.edu	37	17	19285118	19285118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MAPK7-1402	NM_002749	exon5	c.C1502A	p.A501D	TGGAGGCTCCTGA	.	77	10	25	0	.	28	25	3	0	0
SLC47A1	55244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	19449787	19449787	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	SLC47A1-90	NM_018242	exon3	c.T277C	p.S93P	GGCTTATCTTCTG	.	172	36	156	0	.	17	13	4	0	0
ACACA	31	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	35602012	35602012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ACACA-154	NM_198834	exon20	c.C2579A	p.P860H	TTGCTGGGGTTGT	.	148	32	125	2	.	2	1	1	0	0
ACSF2	80221	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48539795	48539795	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ACSF2-68	NM_025149	exon6	c.C641G	p.T214S	ATCTGACCACAGT	.	90	13	67	1	.	31	14	17	0	0
MRC2	9902	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	60753774	60753774	+	Silent	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MRC2-117	NM_006039	exon11	c.C1716A	p.I572I	CCTCATCTACAAC	.	85	18	82	1	.	35	30	5	0	0
LRRC37A3	374819	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	62855782	62855782	+	Silent	SNP	A	A	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LRRC37A3-90	NM_199340	exon11	c.T4482A	p.I1494I	ATGAGCAATGAGC	.	433	90	440	0	.	37	30	7	0	0
MC5R	4161	broad.mit.edu;bcgsc.ca	37	18	13826448	13826448	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MC5R-526	NM_005913	exon1	c.G684A	p.A228A	CTCTGCGCGGCAG	.	125	28	45	1	.	0	0	0	0	0
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	152	2	164	1	.	1	1	0	0	0
MAP1S	55201	hgsc.bcm.edu	37	19	17837417	17837417	+	Silent	SNP	G	G	A	rs138676223		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MAP1S-90	NM_018174	exon5	c.G1224A	p.T408T	GCGCACGCTGGCC	.	14	10	0	0	G|0.987;A|0.013	2	1	1	0	0
GPATCH1	55094	broad.mit.edu	37	19	33603471	33603471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	GPATCH1-91	NM_018025	exon13	c.C1844A	p.P615H	GGCACCCTGACAA	.	106	4	93	0	.	3	3	0	0	0
ZNF780A	284323	hgsc.bcm.edu	37	19	40578806	40578806	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ZNF780A-22	NM_001142579	exon8	c.T435A	p.F145L	ATAACCAAATGCA	.	59	4	69	0	.	2	2	0	0	0
ZNF320	162967	ucsc.edu	37	19	53384827	53384827	+	Silent	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ZNF320-91	NM_207333	exon4	c.T552C	p.T184T	CTCTCCAGTATGA	.	80	1	76	0	.	14	14	0	0	0
EPS8L1	54869	ucsc.edu;bcgsc.ca	37	19	55591878	55591878	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	EPS8L1-115	NM_017729	exon1	c.C17G	p.P6R	CATGGCCAAGAAG	.	158	28	179	1	.	0	0	0	0	0
RFPL4A	342931	bcgsc.ca	37	19	56274066	56274066	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	RFPL4A-68	NM_001145014	exon3	c.A389C	p.Q130P	AGGAGCAAGCTGA	.	610	70	574	2	.	0	0	0	0	0
GKN1	56287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	69207170	69207170	+	Silent	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	GKN1-153	NM_019617	exon5	c.A483G	p.T161T	TCCAACATACATG	.	207	41	248	0	.	0	0	0	0	0
SMYD5	10322	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	73447218	73447218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	SMYD5-226	NM_006062	exon3	c.A245G	p.E82G	CAGAGGAGAATGC	.	147	33	143	1	.	23	7	16	0	0
C2orf81	388963	broad.mit.edu	37	2	74642300	74642300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	.	NM_001145054	exon4	c.A923C	p.Y308S	GAGGGGTAGGACA	.	159	38	99	11	.	3	3	0	0	0
IMMT	10989	broad.mit.edu;bcgsc.ca	37	2	86371928	86371928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	IMMT-91	NM_006839	exon15	c.G1740T	p.M580I	GGTCTTCATGCTG	.	73	22	69	1	.	116	73	43	0	0
LYG2	254773	broad.mit.edu	37	2	99861727	99861727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LYG2-91	NM_175735	exon4	c.C379A	p.Q127K	ATACCTGCATCAA	.	77	4	56	0	.	0	0	0	0	0
DCAF17	80067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	172333421	172333421	+	Silent	SNP	T	T	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	DCAF17-90	NM_025000	exon11	c.T1143A	p.S381S	GATCTCTGAAGAT	.	144	29	150	0	.	9	7	2	0	0
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190437577	190437577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	SLC40A1-91	NM_014585	exon4	c.G382T	p.V128F	CGAGAACCCATCC	.	215	42	196	0	.	0	0	0	0	0
GLS	2744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	191795284	191795284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	GLS-92	NM_014905	exon13	c.A1547G	p.H516R	GAATTCACTTTTG	.	119	31	120	0	.	0	0	0	0	0
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197791195	197791195	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	PGAP1-93	NM_024989	exon1	c.A146T	p.Q49L	CTTACCTGATACT	.	220	40	197	0	.	0	0	0	0	0
SGOL2	151246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	201438489	201438489	+	Silent	SNP	T	T	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	SGOL2-94	NM_001160046	exon7	c.T3420G	p.S1140S	TTTGTCTGAGATA	.	74	13	80	0	.	3	1	2	0	0
UBOX5	22888	bcgsc.ca	37	20	3102507	3102507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	UBOX5-227	NM_014948	exon3	c.C778T	p.P260S	CCTCAGGCACATC	.	62	5	56	0	.	10	10	0	0	0
PROCR	10544	broad.mit.edu	37	20	33762727	33762727	+	Missense_Mutation	SNP	G	G	T	rs200377875		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	PROCR-226	NM_006404	exon2	c.G293T	p.R98L	TCGTGCGCCTGGT	.	67	10	22	1	.	29	26	3	0	0
DLGAP4	22839	hgsc.bcm.edu	37	20	35064566	35064566	+	Missense_Mutation	SNP	G	G	A	rs199988815		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	DLGAP4-94	NM_014902	exon3	c.G1054A	p.D352N	GAGACGGATGCCG	.	34	21	1	0	.	0	0	0	0	0
PRDM15	63977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43241557	43241557	+	Silent	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	PRDM15-90	NM_022115	exon23	c.G3024A	p.L1008L	GTGCTTCAGGTAC	.	105	24	115	0	.	3	3	0	0	0
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50716444	50716444	+	Splice_Site	SNP	T	T	C	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	PLXNB2-211	NM_012401	exon33	c.4888-2A>G	.	GTGCCCTGTGGGG	.	124	17	97	0	.	4	0	4	0	0
CPN2	1370	broad.mit.edu	37	3	194062032	194062032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CPN2-73	NM_001080513	exon2	c.G1400T	p.S467I	TCCCAGCTGCCCC	.	93	6	69	1	.	0	0	0	0	0
KIAA1239	57495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	37447184	37447184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	.	NM_001144990	exon7	c.G3574A	p.V1192M	AGTGAGGTGGTCA	.	88	25	77	0	.	0	0	0	0	0
HPSE	10855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	84240579	84240579	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	HPSE-227	NM_001199830	exon3	c.G417C	p.K139N	CCGTAACTTCTCC	.	113	17	104	0	.	10	10	0	0	0
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	94436380	94436380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	GRID2-159	NM_001510	exon13	c.C2011T	p.L671F	CAGGACCTTTCCA	.	81	16	83	0	.	0	0	0	0	0
ADH6	130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	100129912	100129912	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ADH6-228	NM_000672	exon6	c.A741T	p.L247F	TTTCTTTAAGTCC	.	148	39	123	0	.	1	0	1	0	0
LARP7	51574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	113568519	113568519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LARP7-93	NM_001267039	exon9	c.C832A	p.Q278K	CAAAAGCAGTGCT	.	147	16	126	0	.	64	32	31	1	0
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75902074	75902074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	IQGAP2-96	NM_006633	exon12	c.G1303A	p.E435K	TGGAATGAAATTC	.	122	27	109	0	.	6	4	2	0	0
DDX41	51428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176940458	176940458	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	DDX41-226	NM_016222	exon11	c.G1126C	p.A376P	TGGTGGCACTGAA	.	135	27	146	0	.	51	28	23	0	0
SKAP2	8935	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	26894415	26894415	+	Silent	SNP	A	A	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	SKAP2-91	NM_003930	exon2	c.T162C	p.D54D	CTTTACATCTTTT	.	19	4	26	0	.	0	0	0	0	0
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	43484075	43484075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	HECW1-669	NM_015052	exon11	c.C1304A	p.P435H	TGGGACCTGAAGG	.	118	23	131	0	.	1	0	1	0	0
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48563956	48563956	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ABCA13-521	NM_152701	exon54	c.A14164C	p.N4722H	TTATACAACCTTA	.	138	30	167	0	.	0	0	0	0	0
SSPO	23145	hgsc.bcm.edu;broad.mit.edu	37	7	149518182	149518182	+	Silent	SNP	C	C	T	rs199773714		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	.	NM_198455	exon87	c.C12525T	p.C4175C	CTCATGCGGGCCC	.	37	6	13	0	.	0	0	0	0	0
EFR3A	23167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	132996502	132996502	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	EFR3A-139	NM_015137	exon15	c.T1692G	p.N564K	GGCTAATGAAGAA	.	82	15	86	0	.	24	15	9	0	0
ABCA2	20	hgsc.bcm.edu;bcgsc.ca	37	9	139907277	139907277	+	Silent	SNP	C	C	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ABCA2-90	NM_212533	exon31	c.G5058C	p.V1686V	CCCGCCCACACTG	.	157	23	59	0	.	8	8	0	0	0
COL4A6	1288	bcgsc.ca	37	X	107430496	107430496	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	COL4A6-199	NM_001847	exon23	c.A1784T	p.Q595L	AAGCCCTGTCCAC	.	78	5	95	0	.	0	0	0	0	0
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	3789956	3789956	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	NUP98-703	NM_016320	exon8	c.803delC	p.T268fs	.	.	52	12	49	0	.	0	0	0	0	0
RDH16	8608	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57346721	57346721	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	RDH16-90	NM_003708	exon3	c.626delT	p.F209fs	.	.	90	31	55	0	.	0	0	0	0	0
CTRB1	1504	broad.mit.edu	37	16	75257061	75257061	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CTRB1-68	NM_001906	exon4	c.259delG	p.G87fs	GTGGCTGGGGAGT	.	819	83	566	1	.	0	0	0	0	0
MYH3	4621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	10558280	10558281	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MYH3-95	NM_002470	exon3	c.101_102del	p.34_34del	.	.	164	38	150	0	.	0	0	0	0	0
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	21508155	21508158	+	Frame_Shift_Del	DEL	GATT	GATT	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	GATT	GATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LAMA3-100	NM_198129	exon63	c.8246_8249del	p.2749_2750del	.	.	208	41	215	0	.	0	0	0	0	0
POLR1B	84172	broad.mit.edu;bcgsc.ca	37	2	113330280	113330285	+	In_Frame_Del	DEL	CCAATG	CCAATG	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	CCAATG	CCAATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	POLR1B-91	NM_019014	exon13	c.2216_2221del	p.739_741del	TTGGGACCAATGC	.	121	9	170	0	.	0	0	0	0	0
VPS8	23355	broad.mit.edu;bcgsc.ca	37	3	184612489	184612503	+	Frame_Shift_Del	DEL	AGGGATCTTTTATTT	AGGGATCTTTTATTT	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	AGGGATCTTTTATTT	AGGGATCTTTTATTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	VPS8-91	NM_001009921	exon22	c.1782_1794del	p.594_598del	TGTTACAGGGATC	.	38	9	46	0	.	0	0	0	0	0
CDH12	1010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	21751876	21751876	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CDH12-92	NM_004061	exon15	c.2355delA	p.E785fs	.	.	121	33	111	0	.	0	0	0	0	0
KDM1B	221656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	18218101	18218101	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	KDM1B-91	NM_153042	exon17	c.1674delC	p.V558fs	.	.	97	22	95	0	.	0	0	0	0	0
FHL5	9457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	97053903	97053904	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	FHL5-92	NM_020482	exon5	c.460_461del	p.154_154del	.	.	139	35	146	0	.	0	0	0	0	0
MEPCE	56257	broad.mit.edu	37	7	100028068	100028068	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MEPCE-91	NM_019606	exon1	c.427delG	p.G143fs	CCACCTGGGGGGG	.	6	2	7	0	.	0	0	0	0	0
LAMB1	3912	broad.mit.edu;bcgsc.ca	37	7	107592551	107592555	+	Frame_Shift_Del	DEL	TCACA	TCACA	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	TCACA	TCACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LAMB1-97	NM_002291	exon23	c.3193_3197del	p.1065_1066del	CAGCGGTCACAGT	.	219	19	244	0	.	0	0	0	0	0
LAMB1	3912	broad.mit.edu;bcgsc.ca	37	7	107592557	107592562	+	In_Frame_Del	DEL	TTCTGC	TTCTGC	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	TTCTGC	TTCTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LAMB1-97	NM_002291	exon23	c.3186_3191del	p.1062_1064del	TCACAGTTCTGCC	.	201	19	219	0	.	0	0	0	0	0
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	151919708	151919708	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MLL3-1398	NM_170606	exon21	c.3383delA	p.D1128fs	.	.	336	59	343	0	.	0	0	0	0	0
MON2	23041	hgsc.bcm.edu;broad.mit.edu	37	12	62954348	62954349	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MON2-514	NM_015026	exon26	c.3487_3488insT	p.L1163fs	.	.	43	11	30	0	.	0	0	0	0	0
ZBTB1	22890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	64989255	64989256	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ZBTB1-91	NM_014950	exon2	c.1033_1034insT	p.I345fs	.	.	151	36	216	0	.	0	0	0	0	0
MTA1	9112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	105936238	105936239	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MTA1-135	NM_004689	exon20	c.1906_1907insG	p.R636fs	.	.	139	28	153	0	.	0	0	0	0	0
ZZEF1	23140	broad.mit.edu	37	17	3910206	3910207	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ZZEF1-93	NM_015113	exon55	c.8864_8865insC	p.R2955fs	CAGAGGCGGGTGG	.	101	9	105	0	.	0	0	0	0	0
IL12RB1	3594	broad.mit.edu	37	19	18194264	18194265	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	IL12RB1-91	NM_153701	exon2	c.102_103insC	p.P34fs	ATATGGCGGGTCC	.	186	9	160	0	.	0	0	0	0	0
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	37286106	37286107	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	HEATR5B-142	NM_019024	exon13	c.1874_1875insT	p.C625fs	.	.	284	57	309	0	.	0	0	0	0	0
TRPC4AP	26133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	33603843	33603844	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	TRPC4AP-91	NM_015638	exon10	c.1318_1319insTT	p.H440fs	.	.	143	32	135	0	.	0	0	0	0	0
OSGIN2	734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	90936735	90936736	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	OSGIN2-68	NM_001126111	exon6	c.625_626insT	p.L209fs	.	.	83	16	56	0	.	0	0	0	0	0
AVPR2	554	broad.mit.edu	37	X	153171162	153171163	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	AVPR2-625	NM_001146151	exon2	c.202_203insG	p.R68fs	GGCCGGCGGGGCC	.	120	9	14	0	.	0	0	0	0	0
ST8SIA2	8128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	93007416	93007417	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ST8SIA2-90	NM_006011	exon6	c.C930T	p.I310N	ACAAATCTACCTC	.	76.0	19.0	119.0	0.0	.	0	0	0	0	0
COPG1	22820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	128993744	128993745	+	Nonsense_Mutation	DNP	GC	GC	TA	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	.	NM_016128	exon22	c.C2321A	p.A774*	TCGAAGCAGCCTG	.	313.0	64.0	283.0	0.0	.	0	0	0	0	0
OC90	729330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133041425	133041426	+	Missense_Mutation	DNP	AC	AC	TT	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	OC90-206	NM_001080399	exon13	c.G1032A	p.C557S	GCAGCACCTAAGA	.	94.0	14.0	105.0	0.0	.	0	0	0	0	0