Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 MAP3K6 9064 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 27687435 27687435 + Missense_Mutation SNP C C T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . MAP3K6-1523 NM_004672 exon14 c.G1897A p.E633K CGCCCTCCGCCTC . 102 35 71 0 . 0 0 0 0 0 ZSWIM5 57643 broad.mit.edu 37 1 45671664 45671664 + Missense_Mutation SNP C C A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . ZSWIM5-22 NM_020883 exon1 c.G359T p.G120V CCGGGGCCGCCCC . 25 4 18 0 . 0 0 0 0 0 PRKACB 5567 ucsc.edu 37 1 84663465 84663465 + Silent SNP T T C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . PRKACB-1083 NM_182948 exon7 c.T741C p.C247C ATTATGTGGAACT . 37 1 44 0 . 7 7 0 0 0 TUFT1 7286 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 151552139 151552139 + Silent SNP A A G rs201062061 alternate_allele TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . TUFT1-90 NM_020127 exon11 c.A939G p.K313K TTCAAAAGCTGTG . 138 17 170 0 . 0 0 0 0 0 GATAD2B 57459 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 153792180 153792180 + Missense_Mutation SNP G G C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . GATAD2B-90 NM_020699 exon3 c.C367G p.P123A TGTCTGGTGAGGG . 193 17 241 0 . 0 0 0 0 0 EFNA1 1942 ucsc.edu 37 1 155104060 155104060 + Missense_Mutation SNP C C T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . EFNA1-90 NM_182685 exon2 c.C338T p.P113L TCACACCTTTCAC . 249 1 338 0 . 4 4 0 0 0 CAMK1D 57118 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 12856228 12856228 + Missense_Mutation SNP G G A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . CAMK1D-334 NM_153498 exon7 c.G676A p.D226N GAAAATGACTCCA . 99 10 73 0 . 0 0 0 0 0 ZNF33B 7582 ucsc.edu 37 10 43088083 43088083 + Missense_Mutation SNP A A G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . ZNF33B-90 NM_006955 exon5 c.T2315C p.I772T TCTCCTATGTGTG . 120 1 149 0 . 4 4 0 0 0 IKZF5 64376 broad.mit.edu;bcgsc.ca 37 10 124754057 124754057 + Missense_Mutation SNP T T C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . IKZF5-90 NM_001271840 exon5 c.A499G p.K167E TACCTTTAATTGG . 122 7 163 1 . 0 0 0 0 0 MUC2 4583 bcgsc.ca 37 11 1092926 1092926 + Missense_Mutation SNP C C G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . MUC2-90 NM_002457 exon30 c.C4745G p.T1582R CCCCAACATCGAC . 144 6 180 0 . 0 0 0 0 0 MUC2 4583 bcgsc.ca 37 11 1093312 1093312 + Missense_Mutation SNP C C G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . MUC2-90 NM_002457 exon30 c.C5131G p.P1711A CCAACCCCAACAC . 97 8 124 4 . 0 0 0 0 0 KCNQ1 3784 hgsc.bcm.edu 37 11 2466535 2466535 + Silent SNP G G T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . KCNQ1-515 NM_000218 exon1 c.G207T p.A69A GGCCGCGCCCGCC . 4 4 0 0 . 0 0 0 0 0 TRIM68 55128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 4621750 4621750 + Missense_Mutation SNP C C T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . TRIM68-91 NM_018073 exon7 c.G1214A p.R405Q CCTGCTCGGTACT . 164 35 196 0 . 0 0 0 0 0 CD59 966 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 33731752 33731752 + Missense_Mutation SNP C C T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . CD59-90 NM_203331 exon5 c.G307A p.G103S TCCCACCATTTTC . 215 25 215 2 . 195 144 51 0 0 ZNHIT2 741 hgsc.bcm.edu 37 11 64884755 64884755 + Missense_Mutation SNP G G A rs200126440 TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . ZNHIT2-153 NM_014205 exon1 c.C371T p.P124L CATGGAGGCAGCA . 13 8 1 0 . 3 1 2 0 0 DSCAML1 57453 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 117352683 117352683 + Missense_Mutation SNP G G C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . DSCAML1-159 NM_020693 exon12 c.C2734G p.L912V CCTTCAGTGTGGA . 97 33 110 0 . 0 0 0 0 0 IL10RA 3587 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 117869470 117869470 + Missense_Mutation SNP G G T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . IL10RA-91 NM_001558 exon7 c.G851T p.R284L GCCAGCGTCCCTC . 115 18 122 0 . 16 16 0 0 0 UTP20 27340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 101720912 101720912 + Missense_Mutation SNP C C A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . UTP20-155 NM_014503 exon26 c.C3095A p.S1032Y GGAAATCTGCTTC . 82 13 90 0 . 0 0 0 0 0 PAH 5053 broad.mit.edu 37 12 103271308 103271308 + Missense_Mutation SNP T T A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . PAH-72 NM_000277 exon4 c.A373T p.I125F CTTGAATGGTTCT . 81 4 74 1 . 0 0 0 0 0 GCN1L1 10985 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 120572149 120572149 + Silent SNP G G C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . GCN1L1-94 NM_006836 exon53 c.C7263G p.A2421A GATGACGGCATCC . 76 9 69 1 . 8 1 7 0 0 FBRSL1 57666 hgsc.bcm.edu 37 12 133159733 133159733 + Missense_Mutation SNP C C T rs11550079 TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . FBRSL1-70 NM_001142641 exon17 c.C2507T p.A836V AGGAGGCCGCCAA . 14 11 0 0 C|0.470;T|0.530 0 0 0 0 0 TNFRSF19 55504 broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 24167593 24167593 + Missense_Mutation SNP A A C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . TNFRSF19-228 NM_018647 exon3 c.A179C p.K60T TGTCTAAGGTATA . 122 17 147 1 . 0 0 0 0 0 HMGB1 3146 broad.mit.edu 37 13 31036768 31036768 + Silent SNP C C T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . HMGB1-227 NM_002128 exon4 c.G378A p.A126A TTTCTTCGCAACA . 89 4 110 0 . 418 406 12 0 0 KIAA0226L 80183 broad.mit.edu;bcgsc.ca 37 13 46946278 46946278 + Silent SNP G G A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . . NM_025113 exon3 c.C333T p.S111S GCCAACGGAGTCT . 122 6 123 0 . 0 0 0 0 0 TPP2 7174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 103328750 103328750 + Missense_Mutation SNP G G T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . TPP2-92 NM_003291 exon28 c.G3645T p.W1215C AAACTGGAAAAAT . 117 11 137 0 . 40 40 0 0 0 IRS2 8660 hgsc.bcm.edu 37 13 110435073 110435073 + Missense_Mutation SNP G G A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . IRS2-1334 NM_003749 exon1 c.C3328T p.L1110F CCATGAGGCTCAG . 54 21 8 0 . 0 0 0 0 0 UNC79 57578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 94052953 94052953 + Missense_Mutation SNP G G C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . . NM_020818 exon21 c.G2284C p.D762H AAGAATGATACCG . 30 7 24 0 . 0 0 0 0 0 ASB2 51676 broad.mit.edu 37 14 94405527 94405527 + Missense_Mutation SNP T T G rs199833352 TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . ASB2-228 NM_001202429 exon8 c.A1544C p.H515P GGCGGGTGCGGGC . 94 28 41 9 . 0 0 0 0 0 C15orf39 56905 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 75500838 75500838 + Missense_Mutation SNP A A G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . C15orf39-90 NM_015492 exon2 c.A2449G p.K817E CTGGCCAAGCTGC . 42 7 22 0 . 3 3 0 0 0 UBE2I 7329 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 1370453 1370453 + Missense_Mutation SNP A A G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . UBE2I-290 NM_003345 exon6 c.A348G p.I116M AGGAATACAGGAA . 36 5 25 0 . 111 92 19 0 0 CREBBP 1387 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 3817823 3817823 + Nonsense_Mutation SNP C C A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . CREBBP-1807 NM_004380 exon16 c.G3148T p.E1050X TCTTTTCATCCAC . 110 30 102 0 . 2 1 1 0 0 SRCAP 10847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 30744761 30744761 + Silent SNP A A G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . SRCAP-94 NM_006662 exon28 c.A6288G p.E2096E AGTTGAACAGAGA . 100 25 105 0 . 0 0 0 0 0 CDH8 1006 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 61823266 61823266 + Missense_Mutation SNP G G C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . CDH8-161 NM_001796 exon8 c.C1398G p.I466M AGCAATGATTGTT . 157 11 154 0 . 0 0 0 0 0 PKD1L2 114780 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 81197248 81197248 + Missense_Mutation SNP C C T rs200120814 TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . PKD1L2-92 . . . . TGACCACTAGGGC . 105 26 98 0 . 0 0 0 0 0 RPH3AL 9501 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 131631 131631 + Missense_Mutation SNP T T A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . RPH3AL-91 NM_006987 exon6 c.A366T p.K122N CCCACATTTGGTG . 231 46 211 0 . 0 0 0 0 0 TRPV3 162514 broad.mit.edu 37 17 3438998 3438998 + Missense_Mutation SNP G G T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . TRPV3-94 NM_001258205 exon7 c.C653A p.A218E TTCAGCGCCGTCT . 80 7 16 0 . 0 0 0 0 0 RPL26 6154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 8283223 8283223 + Missense_Mutation SNP A A C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . RPL26-227 NM_000987 exon3 c.T200G p.I67S TTGCCAATTTGCT . 117 14 101 0 . 3788 3518 269 1 0 CEP95 90799 bcgsc.ca 37 17 62528114 62528114 + Missense_Mutation SNP T T C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . CEP95-23 NM_138363 exon14 c.T1646C p.L549P GTGGCCTCCCAAA . 63 4 77 0 . 16 16 0 0 0 GGA3 23163 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 73239164 73239164 + Missense_Mutation SNP C C G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . GGA3-154 NM_138619 exon6 c.G508C p.D170H CATCATCAAAAAC . 284 77 240 0 . 0 0 0 0 0 UTS2R 2837 broad.mit.edu 37 17 80333066 80333066 + Missense_Mutation SNP C C A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . UTS2R-153 NM_018949 exon1 c.C866A p.A289E CGCTGGCGCCGCG . 102 13 50 2 . 0 0 0 0 0 RNMT 8731 ucsc.edu 37 18 13746266 13746266 + Missense_Mutation SNP T T C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . RNMT-90 NM_003799 exon9 c.T1187C p.L396P CATTTCTGGAATT . 274 1 321 0 . 0 0 0 0 0 CTAGE1 64693 broad.mit.edu 37 18 19995948 19995948 + Silent SNP G G C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . CTAGE1-1 NM_172241 exon1 c.C1827G p.L609L ACTTCTGAGTTCT . 120 11 156 1 . 13 13 0 0 0 GRIN3B 116444 hgsc.bcm.edu 37 19 1003374 1003374 + Silent SNP G G A rs34585248 TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . GRIN3B-90 NM_138690 exon2 c.G672A p.A224A GGCGGCGCCAGTG . 60 36 5 0 G|0.966;A|0.034 0 0 0 0 0 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 9058716 9058716 + Nonsense_Mutation SNP G G C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . MUC16-566 NM_024690 exon3 c.C28730G p.S9577X GACATTGACTCTA . 155 31 154 0 . 0 0 0 0 0 ZNF257 113835 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 22271296 22271296 + Silent SNP G G A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . ZNF257-90 NM_033468 exon4 c.G744A p.K248K ACATAAGGTAATT . 71 7 81 1 . 0 0 0 0 0 PRKCG 5582 broad.mit.edu 37 19 54401866 54401866 + Missense_Mutation SNP C C G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . PRKCG-1367 NM_002739 exon11 c.C1265G p.S422C TCCACTCCACCTT . 89 9 89 0 . 4 4 0 0 0 MBOAT7 79143 broad.mit.edu 37 19 54684811 54684811 + Missense_Mutation SNP T T C rs200188828 TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . MBOAT7-68 NM_001146082 exon6 c.A533G p.E178G GGCTGCTCCAGCC . 38 9 12 0 . 5 5 0 0 0 PPP6R1 22870 broad.mit.edu 37 19 55743012 55743012 + Silent SNP T T G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . PPP6R1-67 NM_014931 exon20 c.A2331C p.S777S AGGTGCTGAGGGG . 68 5 60 0 . 59 51 8 0 0 ZNF814 730051 ucsc.edu 37 19 58384712 58384712 + Silent SNP A A G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . . NM_001144989 exon3 c.T2046C p.H682H TCCAGTATGGCCA . 142 1 160 0 . 2 2 0 0 0 RMDN2 151393 bcgsc.ca 37 2 38156861 38156861 + Silent SNP A A G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . . NM_001170792 exon2 c.A441G p.E147E AGCAGAAAGTGAA . 65 4 80 1 . 0 0 0 0 0 ALMS1 7840 broad.mit.edu 37 2 73675809 73675809 + Nonsense_Mutation SNP A A T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . ALMS1-142 NM_015120 exon8 c.A2152T p.R718X TCACATAGAGAGA . 91 3 71 0 . 0 0 0 0 0 PHOSPHO2 493911 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 170557975 170557975 + Nonsense_Mutation SNP T T A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . PHOSPHO2-91 NM_001199286 exon4 c.T494A p.L165X AACAGTTACAACA . 53 6 87 0 . 2 2 0 0 0 TASP1 55617 broad.mit.edu 37 20 13561621 13561621 + Silent SNP C C T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . TASP1-90 NM_017714 exon6 c.G411A p.K137K TGGGTTCTTGATT . 26 6 41 2 . 0 0 0 0 0 LAMA5 3911 broad.mit.edu 37 20 60895706 60895706 + Missense_Mutation SNP A A C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . LAMA5-93 NM_005560 exon50 c.T6668G p.L2223R GGGCCCAGGGGGC . 90 25 55 5 . 3 3 0 0 0 NF2 4771 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 30057329 30057329 + Splice_Site SNP G G A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . NF2-4696 NM_016418 exon8 c.810+1G>A . AAGGAGGTAGGAC . 42 14 68 0 . 0 0 0 0 0 MIRLET7BHG 400931 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 46501510 46501510 + RNA SNP C C T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . . . . . . ACATTCCGTCACC . 101 32 124 1 . 0 0 0 0 0 IL17RC 84818 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 9959173 9959173 + Silent SNP C C T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . IL17RC-92 NM_153461 exon1 c.C174T p.S58S CCTTAGCCTGGCT . 193 20 160 1 . 3 0 3 0 0 ROBO1 6091 ucsc.edu 37 3 78685208 78685208 + Silent SNP G G A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . ROBO1-67 NM_002941 exon23 c.C3088T p.L1030L GCATCAGATTTGT . 199 1 163 0 . 0 0 0 0 0 CD96 10225 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 111297955 111297955 + Missense_Mutation SNP C C T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . CD96-93 NM_198196 exon5 c.C673T p.L225F GTCAAGCTTGGTA . 178 14 178 0 . 12 12 0 0 0 GSK3B 2932 bcgsc.ca 37 3 119642255 119642255 + Silent SNP G G T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . GSK3B-978 NM_002093 exon4 c.C442A p.R148R TGGCTCGACTATA . 51 4 53 0 . 3 3 0 0 0 ZIC1 7545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 147128794 147128794 + Nonsense_Mutation SNP G G T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . ZIC1-91 NM_003412 exon1 c.G895T p.E299X ACGGGCGAGAAGC . 160 36 169 0 . 0 0 0 0 0 MAEA 10296 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 1332242 1332242 + Missense_Mutation SNP G G A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . MAEA-91 NM_001017405 exon8 c.G932A p.S311N CCAAGAGCCCTGA . 68 18 76 0 . 11 6 5 0 0 SLC30A9 10463 ucsc.edu 37 4 42077746 42077746 + Silent SNP T T C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . SLC30A9-91 NM_006345 exon16 c.T1491C p.D497D TTTTGATGGGCGA . 236 1 280 0 . 7 7 0 0 0 TLL1 7092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 166996130 166996130 + Silent SNP T T C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . TLL1-158 NM_012464 exon17 c.T2289C p.H763H GCTACATGACAAT . 161 18 223 0 . 0 0 0 0 0 FCHO2 115548 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 72359736 72359736 + Missense_Mutation SNP C C A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . FCHO2-23 NM_138782 exon18 c.C1414A p.L472I CCAAAGCTTACTT . 139 43 193 0 . 0 0 0 0 0 IQGAP2 10788 broad.mit.edu 37 5 75960882 75960882 + Missense_Mutation SNP A A T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . IQGAP2-96 NM_006633 exon22 c.A2561T p.K854M TGAACAAGAAAAA . 134 4 143 0 . 0 0 0 0 0 NR3C1 2908 ucsc.edu 37 5 142680190 142680190 + Missense_Mutation SNP A A G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . NR3C1-92 NM_001024094 exon5 c.T1610C p.L537S ACCTCCAACAGTG . 183 2 217 0 . 7 7 0 0 0 PXDC1 221749 broad.mit.edu 37 6 3751742 3751742 + Silent SNP G G T rs199672547 alternate_allele TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . . NM_183373 exon1 c.C24A p.G8G CGACGTGCCCTCA . 69 5 53 1 G|0.996;A|0.004 5 5 0 0 0 APOM 55937 broad.mit.edu 37 6 31625014 31625014 + Silent SNP C C G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . APOM-90 NM_019101 exon3 c.C282G p.L94L TGGGCTCTGTGTG . 102 4 111 0 . 0 0 0 0 0 RARS2 57038 ucsc.edu;bcgsc.ca 37 6 88299660 88299660 + Missense_Mutation SNP G G A rs201899366 TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . RARS2-92 NM_020320 exon1 c.C16T p.R6C CGCGGCGAAAGCC . 81 34 83 11 G|0.999;A|0.000 3 3 0 0 0 MTRF1L 54516 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 153315714 153315714 + Missense_Mutation SNP C C G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . MTRF1L-90 NM_019041 exon4 c.G621C p.K207N TTCTGTCTTTGGC . 112 14 113 0 . 1 1 0 0 0 CARD11 84433 broad.mit.edu 37 7 2956956 2956956 + Nonsense_Mutation SNP G G A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . CARD11-870 NM_032415 exon20 c.C2671T p.R891X TTGCTCGCGAGAG . 35 5 30 1 . 8 8 0 0 0 BZW2 28969 broad.mit.edu 37 7 16721024 16721024 + Missense_Mutation SNP G G T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . BZW2-92 NM_014038 exon4 c.G334T p.A112S AACTATGCTCAGG . 54 5 59 0 . 0 0 0 0 0 AUTS2 26053 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 70231266 70231266 + Silent SNP G G A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . AUTS2-92 NM_001127231 exon9 c.G1635A p.P545P CACGCCGTTCCCC . 90 31 63 0 . 0 0 0 0 0 MLL3 58508 broad.mit.edu 37 7 151945198 151945198 + Missense_Mutation SNP G G C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . MLL3-1398 NM_170606 exon14 c.C2321G p.A774G ATGTCTGCTGATG . 627 13 771 0 . 0 0 0 0 0 WDR67 93594 broad.mit.edu;ucsc.edu 37 8 124094982 124094982 + Missense_Mutation SNP C C A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . WDR67-226 NM_001145088 exon3 c.C265A p.L89M ACAGCTCTGGCCT . 32 4 28 0 . 0 0 0 0 0 OPLAH 26873 broad.mit.edu 37 8 145111554 145111554 + Missense_Mutation SNP C C T rs200399200 TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . OPLAH-68 NM_017570 exon13 c.G1811A p.R604H CCCGCACGGGGCG . 108 3 85 0 . 0 0 0 0 0 COL27A1 85301 broad.mit.edu 37 9 117052570 117052570 + Missense_Mutation SNP C C A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . COL27A1-94 NM_032888 exon47 c.C4327A p.P1443T GCTGGACCAGATG . 155 5 138 0 . 10 10 0 0 0 TRIM32 22954 broad.mit.edu;bcgsc.ca 37 9 119461631 119461631 + Missense_Mutation SNP T T A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . TRIM32-650 NM_012210 exon2 c.T1610A p.L537Q TCAATCTGGAGAA . 150 12 168 1 . 1 0 1 0 0 LMX1B 4010 broad.mit.edu 37 9 129376780 129376780 + Missense_Mutation SNP C C A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . LMX1B-90 NM_001174146 exon1 c.C52A p.Q18K CGCGGGCAGACGG . 125 6 62 1 . 0 0 0 0 0 LAMC3 10319 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 133914285 133914285 + Silent SNP G G A rs201170354 TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . LAMC3-93 NM_006059 exon5 c.G1011A p.T337T ATGCACGTTTGAT . 58 8 46 0 G|0.999;A|0.000 0 0 0 0 0 USP9X 8239 broad.mit.edu 37 X 41022128 41022128 + Silent SNP T T C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . USP9X-563 NM_001039591 exon15 c.T1983C p.L661L CTTCCTTAGGTTT . 217 6 250 0 . 0 0 0 0 0 TFE3 7030 broad.mit.edu 37 X 48888986 48888986 + Nonsense_Mutation SNP G G A novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . TFE3-658 NM_006521 exon9 c.C1210T p.Q404X AGCGCTGCTGCTC . 76 4 104 0 . 26 26 0 0 0 DGKK 139189 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 50144042 50144042 + Silent SNP T T C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . DGKK-227 . . . . ATCGCCTTTGGGG . 363 93 363 0 . 0 0 0 0 0 ZXDB 158586 hgsc.bcm.edu 37 X 57618715 57618715 + Silent SNP C C T novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . ZXDB-130 NM_007157 exon1 c.C234T p.T78T GAGGACCGATCAA . 12 8 4 0 . 0 0 0 0 0 GLUD2 2747 ucsc.edu 37 X 120182480 120182480 + Silent SNP A A G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . GLUD2-131 NM_012084 exon1 c.A942G p.L314L GGGCCTACACTCT . 317 4 461 4 . 6 0 6 0 0 THOC2 57187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 122757675 122757675 + Missense_Mutation SNP T T C novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . THOC2-133 NM_001081550 exon28 c.A3466G p.K1156E TCTCTTTTTCTTC . 42 7 67 0 . 10 10 0 0 0 NASP 4678 broad.mit.edu;bcgsc.ca 37 1 46073053 46073073 + In_Frame_Del DEL CCAAAAAAACAGAAGACAAGT CCAAAAAAACAGAAGACAAGT - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 CCAAAAAAACAGAAGACAAGT CCAAAAAAACAGAAGACAAGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . NASP-91 NM_002482 exon6 c.470_490del p.157_164del AAGAAGCCAAAAA . 178 13 229 0 . 0 0 0 0 0 PHTF1 10745 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 114255942 114255943 + Frame_Shift_Del DEL TT TT - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 TT TT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . PHTF1-91 NM_006608 exon7 c.741_742del p.247_248del . . 81 20 93 0 . 0 0 0 0 0 PFKP 5214 hgsc.bcm.edu 37 10 3150955 3150955 + Frame_Shift_Del DEL A A - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . PFKP-253 NM_002627 exon9 c.933delA p.G311fs . . 156 35 168 0 . 0 0 0 0 0 PITRM1 10531 broad.mit.edu;bcgsc.ca 37 10 3207428 3207429 + Splice_Site DEL AC AC - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 AC AC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . PITRM1-91 . . . . AAACTTACAAACG . 94 9 92 0 . 0 0 0 0 0 AHNAK 79026 broad.mit.edu;bcgsc.ca 37 11 62285795 62285796 + Frame_Shift_Del DEL AG AG - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . AHNAK-109 NM_001620 exon5 c.16093_16094del p.5365_5365del CCCCTCAGTGTCA . 153 16 180 0 . 0 0 0 0 0 MTA2 9219 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 62364175 62364176 + Frame_Shift_Del DEL CT CT - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . MTA2-92 NM_004739 exon9 c.815_816del p.272_272del . . 134 24 128 0 . 0 0 0 0 0 OR8D1 283159 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 124180084 124180085 + Frame_Shift_Del DEL GT GT - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 GT GT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . OR8D1-71 NM_001002917 exon1 c.578_579del p.193_193del . . 214 45 198 0 . 0 0 0 0 0 LRRK2 120892 broad.mit.edu 37 12 40742254 40742254 + Frame_Shift_Del DEL G G - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . LRRK2-533 NM_198578 exon43 c.6324delG p.E2108fs GGTTGAGAAATTA . 148 9 211 0 . 0 0 0 0 0 LRRK2 120892 broad.mit.edu 37 12 40742257 40742259 + In_Frame_Del DEL ATT ATT - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 ATT ATT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . LRRK2-533 NM_198578 exon43 c.6327_6329del p.2109_2110del TGAGAAATTAATT . 146 9 207 0 . 0 0 0 0 0 SOAT2 8435 broad.mit.edu;bcgsc.ca 37 12 53499371 53499372 + Frame_Shift_Del DEL AG AG - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . SOAT2-91 NM_003578 exon4 c.302_303del p.101_101del GGAAACAGAAAGT . 88 9 84 0 . 0 0 0 0 0 CEP128 145508 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 81251281 81251284 + Frame_Shift_Del DEL CTTA CTTA - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 CTTA CTTA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . CEP128-91 NM_152446 exon14 c.2166_2169del p.722_723del . . 75 25 92 0 . 0 0 0 0 0 GLCE 26035 hgsc.bcm.edu;bcgsc.ca 37 15 69553563 69553564 + Frame_Shift_Del DEL AG AG - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . GLCE-92 NM_015554 exon4 c.724_725del p.242_242del . . 105 22 157 0 . 0 0 0 0 0 SPIRE2 84501 broad.mit.edu;bcgsc.ca 37 16 89924825 89924826 + Frame_Shift_Del DEL AG AG - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . SPIRE2-90 NM_032451 exon8 c.1182_1183del p.394_395del AGTCACAGATGCT . 102 12 89 0 . 0 0 0 0 0 C17orf80 55028 broad.mit.edu 37 17 71232036 71232037 + Frame_Shift_Del DEL CA CA - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 CA CA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . C17orf80-91 NM_001100621 exon3 c.415_416del p.139_139del AAGGCTCAGTTTT . 197 12 142 0 . 0 0 0 0 0 MAU2 23383 hgsc.bcm.edu 37 19 19431690 19431704 + In_Frame_Del DEL GCGGCCCAGGCGGCG GCGGCCCAGGCGGCG - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 GCGGCCCAGGCGGCG GCGGCCCAGGCGGCG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . MAU2-91 NM_015329 exon1 c.22_36del p.8_12del . . 40 28 2 0 . 0 0 0 0 0 SOCS5 9655 broad.mit.edu 37 2 46987222 46987224 + In_Frame_Del DEL ATT ATT - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 ATT ATT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . SOCS5-659 NM_144949 exon2 c.1553_1555del p.518_519del AGTATCATTATAA . 212 10 233 0 . 0 0 0 0 0 ASPRV1 151516 broad.mit.edu 37 2 70188625 70188626 + Frame_Shift_Del DEL AG AG - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . ASPRV1-69 NM_152792 exon1 c.195_196del p.65_66del ACCCACAGAGCAG . 163 14 173 0 . 0 0 0 0 0 TTL 150465 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 113260608 113260609 + Frame_Shift_Del DEL AT AT - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 AT AT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . TTL-658 NM_153712 exon5 c.725_726del p.242_242del . . 123 33 130 0 . 0 0 0 0 0 C22orf39 128977 broad.mit.edu 37 22 19435297 19435299 + In_Frame_Del DEL AGA AGA - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 AGA AGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . C22orf39-22 NM_173793 exon1 c.24_26del p.8_9del ACTGACAGAAGAA . 305 14 259 0 . 0 0 0 0 0 NEFH 4744 hgsc.bcm.edu 37 22 29885581 29885604 + In_Frame_Del DEL AGGCCAAGTCCCCAGAGAAGGAAG AGGCCAAGTCCCCAGAGAAGGAAG - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 AGGCCAAGTCCCCAGAGAAGGAAG AGGCCAAGTCCCCAGAGAAGGAAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . NEFH-90 NM_021076 exon4 c.1952_1975del p.651_659del . . 189 96 226 0 . 0 0 0 0 0 TEX33 339669 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 37396006 37396008 + In_Frame_Del DEL TCA TCA - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 TCA TCA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . . NM_001163857 exon4 c.507_509del p.169_170del . . 88 25 92 0 . 0 0 0 0 0 SYN2 6854 broad.mit.edu 37 3 12046124 12046126 + In_Frame_Del DEL AGC AGC - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 AGC AGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . SYN2-24 . . . . CCAGCAAGCGCCG . 10 3 5 0 . 0 0 0 0 0 GOLGA4 2803 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 37365077 37365078 + Splice_Site DEL AG AG - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . GOLGA4-93 . . . . . . 128 33 141 0 . 0 0 0 0 0 NFKBIZ 64332 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 101572345 101572345 + Frame_Shift_Del DEL C C - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . NFKBIZ-92 NM_031419 exon5 c.975delC p.N325fs . . 91 17 93 0 . 0 0 0 0 0 HTT 3064 broad.mit.edu 37 4 3076604 3076606 + In_Frame_Del DEL CAG CAG - rs10618869 TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 CAG CAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . HTT-281 NM_002111 exon1 c.52_54del p.18_18del TCCTTCCAGCAGC . 9 3 4 0 . 0 0 0 0 0 RASA1 5921 hgsc.bcm.edu;bcgsc.ca 37 5 86564698 86564699 + Frame_Shift_Del DEL CC CC - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 CC CC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . RASA1-661 NM_002890 exon1 c.430_431del p.144_144del . . 35 12 38 0 . 0 0 0 0 0 ANKHD1-EIF4EBP3 404734 broad.mit.edu;bcgsc.ca 37 5 139928645 139928646 + Frame_Shift_Del DEL AG AG - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . ANKHD1-EIF4EBP3-28 NM_020690 exon35 c.7834_7835del p.2612_2612del GGAGACAGAGGAA . 89 12 125 0 . 0 0 0 0 0 PCDHB5 26167 broad.mit.edu;bcgsc.ca 37 5 140515133 140515134 + Frame_Shift_Del DEL AG AG - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . PCDHB5-95 NM_015669 exon1 c.117_118del p.39_40del AGAAACAGAAAGT . 102 11 141 0 . 0 0 0 0 0 FASTK 10922 bcgsc.ca 37 7 150775936 150775938 + In_Frame_Del DEL GCT GCT - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 GCT GCT - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . FASTK-359 NM_006712 exon3 c.676_678del p.226_226del TGCCAGGCTGCTG . 59 6 70 0 . 0 0 0 0 0 ZNF7 7553 broad.mit.edu 37 8 146066868 146066869 + Frame_Shift_Del DEL TC TC - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 TC TC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . ZNF7-94 NM_003416 exon5 c.376_377del p.126_126del GACGTTTCTGATT . 87 10 90 0 . 0 0 0 0 0 ZRSR2 8233 hgsc.bcm.edu 37 X 15841231 15841236 + In_Frame_Del DEL AGCCGG AGCCGG - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 AGCCGG AGCCGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . ZRSR2-133 NM_005089 exon11 c.1315_1320del p.439_440del . . 62 19 23 0 . 0 0 0 0 0 BCOR 54880 broad.mit.edu 37 X 39913206 39913207 + Frame_Shift_Del DEL AC AC - novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 AC AC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . BCOR-229 NM_001123385 exon14 c.4908_4909del p.1636_1637del ATTCAAACACATC . 235 19 261 0 . 0 0 0 0 0 EPHA2 1969 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 16459720 16459721 + Frame_Shift_Ins INS - - TG novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . EPHA2-1419 NM_004431 exon11 c.2008_2009insCA p.F670fs . . 56 13 84 0 . 0 0 0 0 0 FARP2 9855 broad.mit.edu 37 2 242433486 242433487 + Frame_Shift_Ins INS - - G novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . FARP2-93 NM_014808 exon27 c.3111_3112insG p.D1037fs GCAGGATGGCCCC . 398 8 415 0 . 0 0 0 0 0 MAP3K1 4214 bcgsc.ca 37 5 56183244 56183245 + Frame_Shift_Ins INS - - TA novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 - - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . MAP3K1-956 NM_005921 exon18 c.4154_4155insTA p.R1385fs GACTAAGAATTGC . 116 15 130 0 . 0 0 0 0 0 TOM1 10043 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 35723290 35723291 + Missense_Mutation DNP GA GA TC novel TCGA-P4-A5EA-01A-11D-A28G-10 TCGA-P4-A5EA-11A-11D-A28G-10 GA GA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0451b7be-d503-4cad-88a1-322496cffb25 5d70fe2b-81f9-4b9e-8410-3ccf2035292a . TOM1-91 NM_001135732 exon7 c.A676C p.EM234DL CTGGAGATGGTGA . 72 10 101 1 . 0 0 0 0 0