Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 KIF1B 23095 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 10328310 10328310 + Missense_Mutation SNP T T C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . KIF1B-93 NM_183416 exon7 c.T709C p.S237P AACCTTTCCACTG . 110 26 144 1 . 0 0 0 0 0 HMGCL 3155 hgsc.bcm.edu 37 1 24151846 24151846 + Silent SNP A A G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . HMGCL-90 NM_000191 exon1 c.T60C p.A20A ACTTACAGCCCGG . 87 27 8 0 . 1 1 0 0 0 SYNC 81493 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 33161106 33161106 + Missense_Mutation SNP T T G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . SYNC-91 NM_001161708 exon2 c.A593C p.H198P AGCTCATGGATGA . 88 24 131 0 . 6 5 1 0 0 ZC3H12A 80149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 37949045 37949045 + Missense_Mutation SNP A A T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . ZC3H12A-92 NM_025079 exon6 c.A1633T p.R545W TGGGGCAGGGCAG . 196 53 135 0 . 19 11 8 0 0 KTI12 112970 hgsc.bcm.edu 37 1 52499078 52499078 + Missense_Mutation SNP A A G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . KTI12-91 NM_138417 exon1 c.T356C p.V119A CCCGCCACCTGAG . 43 13 1 0 . 8 2 6 0 0 DHCR24 1718 broad.mit.edu 37 1 55317995 55317995 + Missense_Mutation SNP A A C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . DHCR24-91 NM_014762 exon9 c.T1462G p.S488A ACAAGGAGCCATC . 90 4 94 0 . 178 176 2 0 0 NRAS 4893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 115256491 115256491 + Missense_Mutation SNP T T A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . NRAS-32773 NM_002524 exon3 c.A220T p.T74S CGCCTGTCCTCAT . 74 28 102 0 . 13 7 6 0 0 GON4L 54856 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 155723012 155723012 + Missense_Mutation SNP C C G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . GON4L-93 NM_001037533 exon29 c.G5825C p.G1942A ATCTCTCCCTTTC . 176 51 182 1 . 14 10 4 0 0 C1orf61 10485 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 156386616 156386616 + Missense_Mutation SNP C C A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . C1orf61-91 NM_006365 exon3 c.G16T p.D6Y TGAGATCCTCAGT . 153 42 172 1 . 0 0 0 0 0 DDR2 4921 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 162729664 162729664 + Silent SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . DDR2-1464 NM_001014796 exon9 c.G750A p.V250V CCACGTGTGGCCC . 172 52 198 0 . 0 0 0 0 0 SFMBT2 57713 hgsc.bcm.edu 37 10 7214001 7214001 + Silent SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . SFMBT2-141 NM_001029880 exon19 c.C2271T p.P757P CCTCCGGGGCCGG . 8 6 1 0 . 0 0 0 0 0 PLXDC2 84898 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 20335920 20335920 + Missense_Mutation SNP G G T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . PLXDC2-93 NM_032812 exon3 c.G447T p.L149F AATATTGTCCAAT . 58 5 56 0 . 22 16 6 0 0 TET1 80312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 70332130 70332130 + Missense_Mutation SNP T T C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . TET1-663 NM_030625 exon2 c.T35C p.L12S CCAGATTAGTCAG . 85 28 93 0 . 0 0 0 0 0 OIT3 170392 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 74692266 74692266 + Missense_Mutation SNP T T G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . OIT3-70 NM_152635 exon9 c.T1622G p.I541S TCCGCATCGACTG . 69 16 58 1 . 0 0 0 0 0 KCNMA1 3778 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 78651371 78651371 + Missense_Mutation SNP C C G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . KCNMA1-93 NM_001161352 exon26 c.G3254C p.G1085A CTGTAGCCACCTC . 45 14 65 1 . 1 1 0 0 0 PTEN 5728 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 89717690 89717690 + Missense_Mutation SNP A A G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . PTEN-17735 NM_000314 exon7 c.A715G p.M239V AAGTTCATGTACT . 171 49 163 0 . 87 50 36 1 0 WDR96 80217 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 105928500 105928500 + Splice_Site SNP A A T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . WDR96-95 NM_025145 exon22 c.2691+2T>A . TCTGTTACCTTAA . 22 4 32 0 . 0 0 0 0 0 PDZD8 118987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 119043959 119043959 + Missense_Mutation SNP G G T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . PDZD8-90 NM_173791 exon5 c.C2285A p.P762H GCCTTAGGTGAGG . 68 23 70 0 . 21 10 11 0 0 PWWP2B 170394 hgsc.bcm.edu 37 10 134218416 134218416 + Silent SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . PWWP2B-90 NM_001098637 exon2 c.C412T p.L138L TACAAGCTGTGGG . 5 4 0 0 . 3 3 0 0 0 MUC6 4588 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 1018068 1018068 + Missense_Mutation SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . MUC6-23 NM_005961 exon31 c.C4733T p.P1578L GTAGGTGGGGAGT . 411 70 394 0 . 0 0 0 0 0 MUC5B 727897 hgsc.bcm.edu 37 11 1253980 1253980 + Missense_Mutation SNP A A G rs202127660 TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . . NM_002458 exon17 c.A2045G p.D682G TCAGCGACTGGAG . 89 8 19 0 . 0 0 0 0 0 MUC5B 727897 bcgsc.ca 37 11 1267042 1267042 + Missense_Mutation SNP A A G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . . NM_002458 exon31 c.A8932G p.S2978G GCCACCAGCTCTA . 843 248 589 3 . 0 0 0 0 0 AHNAK 79026 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 62297916 62297916 + Missense_Mutation SNP T T C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . AHNAK-109 NM_001620 exon5 c.A3973G p.M1325V CAGGCATGGAGAT . 185 67 186 1 . 9 3 6 0 0 EEF1G 1937 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 62334912 62334912 + Missense_Mutation SNP A A C rs11549626 TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . . NM_001404 exon6 c.T611G p.L204W TCGCCCAAGACAG . 99 32 70 0 . 2605 1505 1100 0 0 DGAT2 84649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 75509414 75509414 + Missense_Mutation SNP G G C rs145750206 byfrequency;alternate_allele TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . DGAT2-226 NM_032564 exon7 c.G952C p.G318R GGTCGAGGCCTCT . 97 33 77 0 G|0.999;A|0.001 1 1 0 0 0 DDX11 1663 ucsc.edu 37 12 31244689 31244689 + Missense_Mutation SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . DDX11-229 NM_030653 exon10 c.G1126A p.A376T CATGCGGCCACTC . 344 30 128 20 . 7 3 4 0 0 DENND5B 160518 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 31551284 31551284 + Silent SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . DENND5B-24 NM_144973 exon17 c.G3081A p.G1027G CCACCGCCCACAT . 24 9 44 0 . 5 3 2 0 0 PRPH 5630 hgsc.bcm.edu 37 12 49689459 49689459 + Missense_Mutation SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . PRPH-90 NM_006262 exon1 c.G476A p.G159D TGTTGGGCCGCGA . 7 4 0 0 . 0 0 0 0 0 KRT2 3849 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 53045499 53045499 + Missense_Mutation SNP G G C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . KRT2-92 NM_000423 exon1 c.C428G p.P143R CCTCCAGGCCCAA . 117 39 120 0 . 0 0 0 0 0 KRT8 3856 broad.mit.edu 37 12 53298675 53298675 + Missense_Mutation SNP A A C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . KRT8-92 NM_001256282 exon2 c.T175G p.S59A TGCGGGAACCGGG . 76 4 42 1 . 329 329 0 0 0 MDM1 56890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 68696605 68696605 + Silent SNP T T A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . MDM1-95 NM_017440 exon12 c.A1767T p.I589I TGTTTTTATACCA . 27 6 37 0 . 10 10 0 0 0 BTBD11 121551 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 108035881 108035881 + Missense_Mutation SNP T T G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . BTBD11-93 NM_001018072 exon14 c.T2855G p.L952R CACTCCTCTCCAG . 82 26 69 1 . 1 1 0 0 0 SRRM4 84530 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 119583229 119583229 + Missense_Mutation SNP C C A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . SRRM4-2 NM_194286 exon9 c.C815A p.A272D AAACAGCCAGCCC . 106 28 81 0 . 0 0 0 0 0 ATP12A 479 broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 25265339 25265339 + Missense_Mutation SNP T T C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . ATP12A-137 NM_001185085 exon8 c.T1037C p.I346T TCCTCATTGGCAT . 101 37 80 1 . 0 0 0 0 0 RABGGTA 5875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 24734893 24734893 + Silent SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . . NM_004581 exon16 c.G1632A p.P544P GCACAGCGGGTTA . 116 40 119 0 . 27 19 8 0 0 RALGAPA1 253959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 36143779 36143779 + Silent SNP A A C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . RALGAPA1-138 NM_194301 exon22 c.T3243G p.P1081P TATTTCAGGATCC . 243 72 246 0 . 5 2 3 0 0 NPAP1 23742 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 24923342 24923342 + Silent SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . . NM_018958 exon1 c.C2328T p.A776A TGGGGCCCCTGAT . 34 14 20 0 . 0 0 0 0 0 CILP 8483 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 65495764 65495764 + Missense_Mutation SNP C C G rs185181701 alternate_allele TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . CILP-97 NM_003613 exon7 c.G964C p.A322P GCCCAGCTCTCCG . 94 29 87 0 C|0.999;T|0.001 0 0 0 0 0 ZNF75A 7627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 3363138 3363138 + Missense_Mutation SNP T T A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . ZNF75A-153 NM_153028 exon4 c.T63A p.D21E CAATGATGTAATG . 170 84 112 0 . 3 1 2 0 0 IRX3 79191 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 54319068 54319068 + Missense_Mutation SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . IRX3-90 NM_024336 exon2 c.G725A p.G242D CCCTCGCCCCCCG . 130 37 48 1 . 50 27 23 0 0 C16orf3 750 bcgsc.ca 37 16 90095558 90095558 + Missense_Mutation SNP C C T rs76646627 TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . C16orf3-90 NM_001214 exon1 c.G193A p.G65S GGCAGCCTACGGG . 324 17 134 1 C|0.500;T|0.500 0 0 0 0 0 ACADVL 37 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 7127679 7127679 + Silent SNP T T C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . ACADVL-93 NM_001270447 exon17 c.T1641C p.L547L CGGACTTGTCCAC . 106 49 73 0 . 507 178 328 1 0 POLR2A 5430 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 7405000 7405000 + Silent SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . POLR2A-91 NM_000937 exon14 c.G2301A p.K767K CTTCAAGTCTATG . 140 34 88 0 . 0 0 0 0 0 SLC46A1 113235 ucsc.edu;bcgsc.ca 37 17 26731871 26731871 + Missense_Mutation SNP A A C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . SLC46A1-22 NM_001242366 exon2 c.T844G p.F282V CCCCAAAGTGCAC . 256 48 196 2 . 9 7 2 0 0 MRPL45 84311 broad.mit.edu;bcgsc.ca 37 17 36478132 36478132 + Missense_Mutation SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . MRPL45-90 NM_032351 exon7 c.C784T p.H262Y AGAATGCATACCA . 119 63 92 2 . 82 28 54 0 0 GPR179 440435 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 36492994 36492994 + Missense_Mutation SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . GPR179-93 NM_001004334 exon4 c.G1094A p.S365N ATGCAGCTGGTGC . 78 14 25 0 . 0 0 0 0 0 KRTAP4-5 85289 hgsc.bcm.edu 37 17 39305800 39305800 + Missense_Mutation SNP T T A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . KRTAP4-5-90 NM_033188 exon1 c.A220T p.S74C AGCAGCTGGATTC . 69 15 12 0 . 0 0 0 0 0 OTOP3 347741 broad.mit.edu 37 17 72942796 72942796 + Silent SNP G G A rs200903740 TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . OTOP3-69 NM_178233 exon6 c.G846A p.A282A CACCGCGTGTGAA . 90 4 60 0 G|0.999;A|0.001 0 0 0 0 0 FLJ45079 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 75879250 75879250 + RNA SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . . . . . . CTTGGCCCTAGAG . 66 16 51 0 . 0 0 0 0 0 CCDC40 55036 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 78055491 78055491 + Missense_Mutation SNP C C A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . CCDC40-71 NM_017950 exon11 c.C1709A p.T570N TCACCACCCAGTG . 230 56 138 1 . 12 7 5 0 0 MYL12B 103910 broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 3273023 3273023 + Missense_Mutation SNP C C G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . MYL12B-90 NM_033546 exon2 c.C127G p.Q43E ATTGATCAGAACA . 177 54 171 2 . 1283 695 587 0 1 HMHA1 23526 hgsc.bcm.edu 37 19 1081736 1081736 + Missense_Mutation SNP A A C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . HMHA1-91 NM_001258328 exon18 c.A2426C p.K809T GCACCAAGGTGAG . 31 10 2 0 . 1 0 1 0 0 EVI5L 115704 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 7917990 7917990 + Missense_Mutation SNP C C G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . EVI5L-91 NM_001159944 exon8 c.C1006G p.P336A GTGATCCCCCACC . 112 43 79 0 . 19 10 9 0 0 PGLYRP2 114770 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 15582776 15582776 + Missense_Mutation SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . PGLYRP2-93 NM_052890 exon3 c.C1268T p.T423M CAGCGCGTGAAGT . 88 5 59 0 . 0 0 0 0 0 TMEM38A 79041 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 16793291 16793291 + Missense_Mutation SNP G G C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . TMEM38A-92 NM_024074 exon4 c.G526C p.E176Q AAGCCAGAGACCA . 133 42 92 0 . 8 4 4 0 0 BABAM1 29086 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 17384931 17384931 + Missense_Mutation SNP T T C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . . NM_014173 exon5 c.T481C p.S161P CTGACCTCCGACC . 51 23 40 0 . 73 45 28 0 0 UNC13A 23025 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 17767189 17767189 + Silent SNP G G T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . UNC13A-25 NM_001080421 exon10 c.C786A p.R262R GGCATAGCGGCTG . 27 7 34 0 . 0 0 0 0 0 SUGP2 10147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 19106027 19106027 + Missense_Mutation SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . SUGP2-91 NM_014884 exon9 c.G3054A p.M1018I CTGCAGCATCTGG . 57 19 61 0 . 39 21 18 0 0 VSTM2B 342865 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 30018151 30018151 + Missense_Mutation SNP T T C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . VSTM2B-68 NM_001146339 exon2 c.T116C p.V39A TGACAGTACGGGA . 69 13 52 0 . 0 0 0 0 0 TTC27 55622 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 33002960 33002960 + Nonsense_Mutation SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . TTC27-90 NM_017735 exon14 c.G1692A p.W564X GGTGTGGTTTTCT . 114 40 142 1 . 9 8 1 0 0 FAM98A 25940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 33813426 33813426 + Silent SNP T T C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . FAM98A-91 NM_015475 exon4 c.A498G p.Q166Q GAAGAATTGGAAC . 75 32 79 0 . 24 9 15 0 0 ANTXR1 84168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 69409663 69409663 + Silent SNP T T G rs138963459 TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . ANTXR1-94 NM_032208 exon16 c.T1224G p.A408A AGGTGCTAAGTTG . 85 24 93 0 T|1.000;G|0.000 22 14 8 0 0 TTC31 64427 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 74718487 74718487 + Silent SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . TTC31-90 NM_022492 exon7 c.G669A p.Q223Q GGGACAGTGTGGT . 84 22 99 0 . 14 8 6 0 0 SUCLG1 8802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 84652539 84652539 + Silent SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . SUCLG1-90 NM_003849 exon8 c.G1014A p.K338K GCTCACCTTGTAG . 119 36 98 0 . 4 2 2 0 0 KCNIP3 30818 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 95976175 95976175 + Missense_Mutation SNP A A G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . KCNIP3-154 NM_013434 exon2 c.A88G p.I30V GAGGGTATCAAGT . 364 110 356 1 . 0 0 0 0 0 KCNIP3 30818 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 95976177 95976177 + Silent SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . KCNIP3-154 NM_013434 exon2 c.C90T p.I30I GGGTATCAAGTGG . 361 109 352 1 . 0 0 0 0 0 SLC5A7 60482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 108604763 108604763 + Nonsense_Mutation SNP T T A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . SLC5A7-93 NM_021815 exon2 c.T152A p.L51X TTGGTTTATTGGT . 142 41 133 0 . 0 0 0 0 0 ZRANB3 84083 hgsc.bcm.edu;broad.mit.edu 37 2 135988115 135988115 + Missense_Mutation SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . ZRANB3-658 NM_032143 exon13 c.G1922A p.C641Y ATTTCACAATAAG . 96 5 94 0 . 6 6 0 0 0 SSB 6741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 170667495 170667495 + Missense_Mutation SNP A A C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . SSB-94 NM_003142 exon10 c.A938C p.E313A AAAAAGAAGCACT . 133 42 139 0 . 121 64 57 0 0 TNS1 7145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 218678511 218678511 + Silent SNP C C G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . TNS1-156 NM_022648 exon26 c.G4446C p.P1482P GGCCCCCGGCTCC . 110 34 124 0 . 22 16 6 0 0 PTPRN 5798 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 220164041 220164041 + Missense_Mutation SNP A A T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . PTPRN-229 NM_002846 exon11 c.T1589A p.V530E TGGGTCACATCAG . 138 57 138 1 . 0 0 0 0 0 PTPRN 5798 bcgsc.ca 37 2 220164916 220164916 + Silent SNP A A G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . PTPRN-229 NM_002846 exon9 c.T1227C p.P409P GTGTCCAGGCATG . 45 4 46 0 . 0 0 0 0 0 ANKMY1 51281 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 241465102 241465102 + Silent SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . ANKMY1-90 NM_016552 exon6 c.G1068A p.Q356Q GCTTACCTGGGGC . 121 45 118 0 . 0 0 0 0 0 JAG1 182 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 10653490 10653490 + Nonsense_Mutation SNP A A C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . JAG1-1273 NM_000214 exon2 c.T246G p.Y82X GGACTGATACTCC . 94 25 49 0 . 20 15 5 0 0 DZANK1 55184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 18414380 18414380 + Silent SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . . NM_001099407 exon9 c.G777A p.L259L GGGTACCAAGCTT . 61 14 68 0 . 1 1 0 0 0 TRPC4AP 26133 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 33622951 33622951 + Silent SNP G G T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . TRPC4AP-91 NM_199368 exon8 c.C1026A p.A342A CTCATTGGCCACT . 130 57 107 2 . 40 24 16 0 0 SS18L1 26039 hgsc.bcm.edu 37 20 60738629 60738629 + Missense_Mutation SNP C C A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . SS18L1-660 NM_198935 exon6 c.C672A p.S224R GGGGAGCAGCATG . 98 43 2 0 . 1 1 0 0 0 LAMA5 3911 broad.mit.edu 37 20 60895706 60895706 + Missense_Mutation SNP A A C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . LAMA5-93 NM_005560 exon50 c.T6668G p.L2223R GGGCCCAGGGGGC . 73 20 18 1 . 38 37 1 0 0 PWP2 5822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 45534138 45534138 + Missense_Mutation SNP T T C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . PWP2-91 NM_005049 exon4 c.T305C p.V102A ACAGTGTGTCCTT . 85 17 89 0 . 1 1 0 0 0 C22orf15 150248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 24106287 24106287 + Silent SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . C22orf15-90 NM_182520 exon2 c.G39A p.V13V CTCGGTGCTGGTG . 65 25 95 0 . 0 0 0 0 0 GATSL3 652968 hgsc.bcm.edu 37 22 30685454 30685454 + Silent SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . GATSL3-135 NM_001037666 exon1 c.G33A p.R11R CAGCACCCGCACC . 56 20 8 0 . 3 2 1 0 0 CBY1 25776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 39066951 39066951 + Silent SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . CBY1-91 NM_001002880 exon4 c.G270A p.L90L GAACCTGGCAGGG . 67 14 64 0 . 68 41 27 0 0 KIAA0930 23313 broad.mit.edu 37 22 45599044 45599044 + Missense_Mutation SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . KIAA0930-90 NM_015264 exon7 c.G694A p.A232T TCTGTGCCATGCG . 98 30 39 1 . 73 41 32 0 0 CAMP 820 bcgsc.ca 37 3 48266885 48266885 + Missense_Mutation SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . CAMP-91 NM_004345 exon4 c.C493T p.R165W TTTTTGCGGAATC . 62 5 36 0 . 0 0 0 0 0 FAM212A 389119 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 49842183 49842183 + Missense_Mutation SNP A A C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . . NM_203370 exon2 c.A627C p.E209D GAGTGAAGGGGGT . 305 151 93 0 . 1 1 0 0 0 ARHGAP31 57514 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 119099827 119099827 + Missense_Mutation SNP A A G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . ARHGAP31-92 NM_020754 exon4 c.A425G p.H142R CATCCCACTATAG . 173 79 172 1 . 0 0 0 0 0 GOLGB1 2804 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 121415217 121415217 + Nonsense_Mutation SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . GOLGB1-161 NM_001256486 exon13 c.C4153T p.Q1385X CAATTTGTAGTTG . 59 12 40 0 . 23 22 1 0 0 ARMC8 25852 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 137982982 137982982 + Silent SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . ARMC8-90 NM_015396 exon15 c.C1185T p.H395H TTTGCACAGTTTA . 83 24 55 0 . 0 0 0 0 0 RBP1 5947 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 139237296 139237296 + Missense_Mutation SNP C C A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . RBP1-514 NM_002899 exon3 c.G507T p.W169C CTGGGTCCAGCCA . 86 25 69 0 . 43 40 3 0 0 LEPREL1 55214 ucsc.edu 37 3 189711953 189711953 + Silent SNP A A G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . LEPREL1-155 NM_018192 exon3 c.T753C p.C251C CCCCTCACATAGG . 40 4 30 0 . 22 22 0 0 0 EXOC1 55763 hgsc.bcm.edu 37 4 56738102 56738102 + Missense_Mutation SNP T T C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . EXOC1-950 NM_018261 exon8 c.T1052C p.L351P GTCACCTCAACAA . 73 4 129 0 . 22 22 0 0 0 REST 5978 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 57797826 57797826 + Missense_Mutation SNP A A C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . REST-232 NM_001193508 exon4 c.A2802C p.L934F AACTTTAAATGGT . 110 43 153 0 . 14 12 2 0 0 RAPGEF2 9693 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 160268070 160268070 + Missense_Mutation SNP T T C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . RAPGEF2-637 NM_014247 exon19 c.T3149C p.I1050T ATAAAATCAACCA . 72 22 72 1 . 9 6 3 0 0 UFSP2 55325 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 186334930 186334930 + Missense_Mutation SNP T T C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . UFSP2-90 NM_018359 exon7 c.A781G p.I261V TTCTAATGTAACC . 145 42 149 1 . 33 18 15 0 0 C5orf30 90355 ucsc.edu;bcgsc.ca 37 5 102611692 102611692 + Silent SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . C5orf30-68 NM_033211 exon3 c.C72T p.N24N GGCCAACTCCCCG . 250 87 245 3 . 4 2 2 0 0 NQO2 4835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 3010268 3010268 + Missense_Mutation SNP T T C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . NQO2-91 NM_000904 exon3 c.T17C p.V6A AGAAAGTACTCAT . 104 30 123 0 . 0 0 0 0 0 GABBR1 2550 hgsc.bcm.edu 37 6 29595420 29595420 + Missense_Mutation SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . GABBR1-521 NM_001470 exon6 c.G500A p.R167Q GCGCGCCGTTCTG . 34 14 5 0 . 6 4 2 0 0 NFKBIL1 4795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 31526116 31526116 + Missense_Mutation SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . NFKBIL1-90 NM_005007 exon4 c.G874A p.G292S GGGAGGGGCAGCC . 69 23 24 0 . 27 12 15 0 0 ZBTB22 9278 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 33284267 33284267 + Missense_Mutation SNP A A G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . ZBTB22-69 NM_001145338 exon2 c.T427C p.C143R CAGTGCACTTGTC . 131 57 119 1 . 29 16 13 0 0 LINC00336 401253 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 33560882 33560882 + RNA SNP T T C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . . . . . . ACTTTGTCTCCAT . 106 44 51 0 . 0 0 0 0 0 HCRTR2 3062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 55039411 55039411 + Missense_Mutation SNP C C G rs76774128 alternate_allele TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . HCRTR2-525 NM_001526 exon1 c.C26G p.S9C AGGACTCCCCCCC . 130 47 91 0 . 0 0 0 0 0 COL12A1 1303 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 75848659 75848659 + Missense_Mutation SNP G G T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . COL12A1-142 NM_004370 exon28 c.C4976A p.T1659K AAGTTTGTTGGGG . 63 16 64 0 . 2 2 0 0 0 FOXK1 221937 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 4794196 4794196 + Missense_Mutation SNP A A C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . FOXK1-516 NM_001037165 exon3 c.A853C p.K285Q GCAGCAAAGGCCG . 109 58 42 1 . 6 2 4 0 0 AHR 196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 17375399 17375399 + Missense_Mutation SNP G G C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . AHR-227 NM_001621 exon9 c.G1149C p.Q383H AACTCAGAGACCA . 71 40 57 0 . 0 0 0 0 0 AUTS2 26053 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 69364300 69364300 + Missense_Mutation SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . AUTS2-92 NM_001127231 exon2 c.G338A p.R113H AGGAACGTGTGGA . 130 22 73 0 . 0 0 0 0 0 BAZ1B 9031 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 72873963 72873963 + Missense_Mutation SNP A A G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . BAZ1B-159 NM_032408 exon13 c.T3335C p.F1112S GCCATGAAGCCTT . 70 43 60 0 . 96 23 73 0 0 CUX1 1523 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 101882763 101882763 + Silent SNP G G A rs140169027 TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . CUX1-160 NM_001202543 exon23 c.G3819A p.A1273A ACGAGCGTATCAG . 158 98 57 0 G|1.000;A|0.000 4 2 2 0 0 MLL3 58508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 151845991 151845991 + Missense_Mutation SNP C C A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . MLL3-1398 NM_170606 exon52 c.G13021T p.G4341W CAAACCCACCATG . 97 23 62 0 . 18 10 8 0 0 VDAC3 7419 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 42259309 42259309 + Missense_Mutation SNP G G C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . VDAC3-91 NM_001135694 exon7 c.G330C p.K110N CAGAAAGAAGAGT . 72 22 64 0 . 0 0 0 0 0 KCNS2 3788 bcgsc.ca 37 8 99440470 99440470 + Missense_Mutation SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . KCNS2-91 NM_020697 exon2 c.G263A p.G88D ACACCGGCAAGCT . 105 36 91 2 . 0 0 0 0 0 KIFC2 90990 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 145694989 145694989 + Missense_Mutation SNP C C A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . KIFC2-92 NM_145754 exon12 c.C1339A p.R447S CGATTCCGCCTAG . 49 22 42 1 . 23 10 13 0 0 LINGO2 158038 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 27950499 27950499 + Silent SNP G G A novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . LINGO2-516 NM_001258282 exon7 c.C171T p.I57I GGTTTCGATGGGA . 184 54 210 1 . 1 0 1 0 0 CEP78 84131 broad.mit.edu;bcgsc.ca 37 9 80856624 80856624 + Missense_Mutation SNP G G T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . CEP78-69 NM_001098802 exon4 c.G512T p.G171V GTCAAGGTATAAA . 87 37 90 2 . 0 0 0 0 0 CRB2 286204 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 126125164 126125164 + Missense_Mutation SNP C C T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . CRB2-91 NM_173689 exon2 c.C115T p.P39S GAGCCCCCCAGTG . 75 27 61 1 . 0 0 0 0 0 FIBCD1 84929 hgsc.bcm.edu 37 9 133813948 133813948 + Missense_Mutation SNP T T C rs199804534 TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . FIBCD1-90 NM_001145106 exon2 c.A47G p.E16G CGGTCCTCAAGTT . 7 7 0 0 . 0 0 0 0 0 SSX6 280657 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 47976491 47976491 + RNA SNP G G C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . SSX6-130 . . . . CGCCGGGAAAAGC . 566 163 549 0 . 0 0 0 0 0 SLC6A14 11254 broad.mit.edu 37 X 115568961 115568961 + Missense_Mutation SNP G G C novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . SLC6A14-133 NM_007231 exon2 c.G52C p.V18L CAGAAAGTGTCGG . 43 10 56 2 . 0 0 0 0 0 VPS13D 55187 bcgsc.ca 37 1 12378145 12378145 + Frame_Shift_Del DEL T T - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . VPS13D-95 NM_015378 exon31 c.7165delT p.S2389fs GATTCCTCCTGCT . 30 6 51 0 . 0 0 0 0 0 C1orf114 57821 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 169390718 169390718 + Frame_Shift_Del DEL A A - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . C1orf114-68 NM_021179 exon3 c.951delT p.S317fs . . 77 35 73 0 . 0 0 0 0 0 KLRC3 3823 hgsc.bcm.edu;broad.mit.edu 37 12 10573086 10573086 + Frame_Shift_Del DEL T T - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . KLRC3-517 NM_007333 exon1 c.64delA p.R22fs . . 48 13 68 0 . 0 0 0 0 0 KLRC2 3822 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 10588522 10588522 + Frame_Shift_Del DEL T T - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . KLRC2-514 NM_002260 exon1 c.64delA p.R22fs . . 154 34 146 0 . 0 0 0 0 0 TTLL5 23093 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 76243163 76243163 + Frame_Shift_Del DEL A A - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . TTLL5-92 NM_015072 exon23 c.2357delA p.E786fs . . 97 21 92 0 . 0 0 0 0 0 LOC81691 0 broad.mit.edu;bcgsc.ca 37 16 20851720 20851720 + Frame_Shift_Del DEL G G - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . LOC81691-92 NM_030941 exon15 c.1556delG p.R519fs ATCTCAGGGCTCT . 70 34 73 0 . 0 0 0 0 0 GPATCH8 23131 hgsc.bcm.edu;bcgsc.ca 37 17 42475173 42475176 + Frame_Shift_Del DEL TGAG TGAG - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 TGAG TGAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . GPATCH8-94 NM_001002909 exon8 c.4269_4272del p.1423_1424del . . 263 112 206 0 . 0 0 0 0 0 HOOK2 29911 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 12874398 12874398 + Frame_Shift_Del DEL T T - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . HOOK2-92 NM_013312 exon22 c.1954delA p.S652fs . . 118 40 121 0 . 0 0 0 0 0 NUP62 23636 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 50411616 50411633 + In_Frame_Del DEL GTCCATGTGCGCATTGAG GTCCATGTGCGCATTGAG - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 GTCCATGTGCGCATTGAG GTCCATGTGCGCATTGAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . NUP62-615 NM_153719 exon3 c.1432_1449del p.478_483del . . 62 17 47 0 . 0 0 0 0 0 PRKCG 5582 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 54401854 54401854 + Frame_Shift_Del DEL C C - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . PRKCG-1367 NM_002739 exon11 c.1253delC p.T418fs . . 71 28 52 0 . 0 0 0 0 0 BPIFA1 51297 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 31829269 31829269 + Frame_Shift_Del DEL G G - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . . NM_016583 exon6 c.660delG p.Q220fs . . 85 20 115 0 . 0 0 0 0 0 ROBO1 6091 broad.mit.edu 37 3 79639003 79639003 + Frame_Shift_Del DEL T T - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . ROBO1-67 NM_002941 exon2 c.59delA p.N20fs AGGTGATTTGGGG . 167 11 153 0 . 0 0 0 0 0 PRPF4B 8899 bcgsc.ca 37 6 4032300 4032315 + Frame_Shift_Del DEL AAGTAAAAGCAGATCC AAGTAAAAGCAGATCC - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 AAGTAAAAGCAGATCC AAGTAAAAGCAGATCC - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . PRPF4B-1308 NM_003913 exon2 c.549_564del p.183_188del GAAACGAAGTAAA . 77 8 120 0 . 0 0 0 0 0 RSPH3 83861 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 159398820 159398821 + Frame_Shift_Del DEL TG TG - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 TG TG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . RSPH3-92 NM_031924 exon8 c.1432_1433del p.478_478del . . 77 23 72 0 . 0 0 0 0 0 MLL3 58508 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 151873882 151873883 + Frame_Shift_Del DEL TT TT - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 TT TT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . MLL3-1398 NM_170606 exon38 c.8655_8656del p.2885_2886del . . 164 98 98 0 . 0 0 0 0 0 SLC7A13 157724 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 87235298 87235298 + Frame_Shift_Del DEL T T - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . SLC7A13-90 NM_138817 exon2 c.720delA p.K240fs . . 55 16 47 0 . 0 0 0 0 0 KIAA0368 23392 broad.mit.edu 37 9 114125936 114125936 + Frame_Shift_Del DEL T T - novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . KIAA0368-68 NM_001080398 exon50 c.5846delA p.N1949fs GTCTTATTTTCTA . 11 4 17 0 . 0 0 0 0 0 KRTAP4-5 85289 hgsc.bcm.edu;broad.mit.edu 37 17 39305911 39305912 + In_Frame_Ins INS - - GCAGCAGGTGGTCCT novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . KRTAP4-5-90 NM_033188 exon1 c.109_110insAGGACCACCTGCTGC p.R37delinsRTTCCR . . 106 33 41 0 . 0 0 0 0 0 SIRT6 51548 broad.mit.edu 37 19 4175089 4175090 + Frame_Shift_Ins INS - - G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . SIRT6-227 NM_016539 exon7 c.674_675insC p.L225fs AGCGGCAGGTTCC . 165 7 31 0 . 0 0 0 0 0 PIK3R1 5295 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 67588157 67588158 + Frame_Shift_Ins INS - - G novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . PIK3R1-4332 NM_181523 exon8 c.987_988insG p.Q329fs . . 55 24 51 0 . 0 0 0 0 0 THSD7A 221981 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 11486930 11486931 + Frame_Shift_Ins INS - - T novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . THSD7A-71 NM_015204 exon12 c.2727_2728insA p.L909fs . . 167 84 85 0 . 0 0 0 0 0 ETHE1 23474 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 44030496 44030497 + Missense_Mutation DNP TA TA AT novel TCGA-P4-A5E7-01A-31D-A28G-10 TCGA-P4-A5E7-11A-11D-A28G-10 TA TA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b75f116-8565-4b91-8bbe-c053a72fad8c 4106b575-287e-4493-8e74-2a72b1b94591 . ETHE1-90 NM_014297 exon3 c.T231A p.NT77KS GTGGGTATTCACT . 131.0 43.0 143.0 0.0 . 0 0 0 0 0