Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 ZMPSTE24 10269 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 40724033 40724033 + Silent SNP G G C novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . ZMPSTE24-226 NM_005857 exon1 c.G90C p.V30V GACAGTGTATCTT . 99 32 83 0 . 0 0 0 0 0 GSTM4 2948 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 110201466 110201466 + Missense_Mutation SNP C C A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . GSTM4-44 NM_147148 exon6 c.C391A p.L131I GAGGAACTTCCTA . 303 97 327 0 . 18 16 2 0 0 IGSF3 3321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 117120184 117120184 + Missense_Mutation SNP C C G novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . IGSF3-92 NM_001542 exon12 c.G3395C p.S1132T GTGGGACCTGAAA . 88 30 57 0 . 0 0 0 0 0 PBXIP1 57326 broad.mit.edu 37 1 154920116 154920116 + Splice_Site SNP A A C novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . PBXIP1-153 NM_020524 exon9 c.738+2T>G . ACACATACCTGCC . 130 27 106 18 . 0 0 0 0 0 INSRR 3645 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 156824054 156824054 + Missense_Mutation SNP G G A rs140386495 TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . INSRR-1403 NM_014215 exon2 c.C127T p.R43C GCTGACGAAGCTC . 59 14 57 0 G|1.000;A|0.000 0 0 0 0 0 KLHDC9 126823 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 161069269 161069269 + Missense_Mutation SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . KLHDC9-22 NM_001007255 exon2 c.G661A p.G221R GTAGCTGGGCATT . 230 70 193 0 . 39 26 13 0 0 IARS2 55699 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 220311360 220311360 + Missense_Mutation SNP A A G novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . IARS2-94 NM_018060 exon17 c.A2150G p.N717S TGCTCAATGCTGC . 142 11 141 0 . 7 7 0 0 0 URB2 9816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 229771821 229771821 + Silent SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . URB2-174 NM_014777 exon4 c.G1461A p.Q487Q GAGGCAGCCTGTG . 117 55 114 0 . 0 0 0 0 0 HNRNPU 3192 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 245018785 245018785 + Missense_Mutation SNP A A G novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . HNRNPU-22 NM_031844 exon12 c.T2293C p.Y765H TTGAGTAACTACC . 119 45 138 0 . 110 75 35 0 0 NRP1 8829 ucsc.edu;bcgsc.ca 37 10 33543118 33543118 + Silent SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . NRP1-525 NM_001244973 exon6 c.C819T p.F273F ACATTTGAAATCT . 46 5 73 0 . 0 0 0 0 0 OPN4 94233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 88419072 88419072 + Missense_Mutation SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . OPN4-69 NM_001030015 exon6 c.G680A p.G227E CCGAGGGGTTGCT . 77 29 56 0 . 0 0 0 0 0 KCNA4 3739 hgsc.bcm.edu;broad.mit.edu 37 11 30034138 30034138 + Missense_Mutation SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . KCNA4-517 NM_002233 exon2 c.C88T p.R30W TCTCCCGCTCCCG . 12 5 14 0 . 0 0 0 0 0 API5 8539 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 43350300 43350300 + Silent SNP A A T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . API5-136 NM_006595 exon9 c.A984T p.G328G AAATGGAGAGAAT . 234 73 244 0 . 2 2 0 0 0 NRXN2 9379 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 64428553 64428553 + Silent SNP A A T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . NRXN2-232 NM_015080 exon10 c.T1857A p.I619I GTCCAGAATCTCG . 174 72 146 2 . 0 0 0 0 0 MCAM 4162 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 119185945 119185945 + Silent SNP C C T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . MCAM-137 NM_006500 exon2 c.G96A p.A32A CTCAGGCGCAGGC . 48 5 42 0 . 0 0 0 0 0 C2CD5 9847 broad.mit.edu 37 12 22646273 22646273 + Splice_Site SNP T T A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . . NM_014802 exon12 c.1148-2A>T . TTCATCTGAAAAA . 39 3 21 0 . 0 0 0 0 0 GLI1 2735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 57861257 57861257 + Missense_Mutation SNP C C A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . GLI1-722 NM_005269 exon9 c.C1054A p.Q352K AAGCACCAGAATC . 368 92 214 0 . 0 0 0 0 0 PAWR 5074 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 80083606 80083606 + Missense_Mutation SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . PAWR-90 NM_002583 exon2 c.C419T p.S140L GGGCCCGAGCTCT . 100 5 40 0 . 0 0 0 0 0 P2RX2 22953 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 133197702 133197702 + Missense_Mutation SNP C C T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . P2RX2-68 NM_170683 exon8 c.C890T p.S297L CCTCGTCAGGCTA . 182 11 124 0 . 0 0 0 0 0 POU4F1 5457 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 79175599 79175599 + Missense_Mutation SNP C C A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . POU4F1-515 NM_006237 exon2 c.G1211T p.C404F TGGTTGCAAAACC . 43 12 48 0 . 0 0 0 0 0 LINC00238 440184 ucsc.edu 37 14 66965190 66965190 + RNA SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . . . . . . GAATTAGCAGGCT . 46 4 59 0 . 0 0 0 0 0 DCAF5 8816 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 69521317 69521317 + Missense_Mutation SNP T T C novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . DCAF5-91 NM_003861 exon9 c.A2086G p.T696A GGCTGGTTCCTGC . 68 21 60 0 . 14 8 6 0 0 IRF2BPL 64207 hgsc.bcm.edu 37 14 77493794 77493794 + Silent SNP T T C rs28718623 TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . IRF2BPL-90 NM_024496 exon1 c.A342G p.Q114Q CTGCTGTTGCTGC . 8 4 3 0 . 4805 8 4794 1 2 IGDCC4 57722 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 65684246 65684246 + Missense_Mutation SNP C C G novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . IGDCC4-93 NM_020962 exon12 c.G2196C p.K732N CTTGCCCTTCCAC . 112 40 92 0 . 0 0 0 0 0 SLC24A1 9187 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 65942809 65942809 + Silent SNP A A G novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . . NM_004727 exon7 c.A2322G p.G774G AAGTGGAGGTGAA . 226 72 229 2 . 3 3 0 0 0 PEAK1 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 77472613 77472613 + Silent SNP A A T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . . NM_024776 exon5 c.T1656A p.T552T TCCACTAGTAATT . 110 35 140 0 . 0 0 0 0 0 CARHSP1 23589 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 8953055 8953055 + Missense_Mutation SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . CARHSP1-90 NM_001042476 exon2 c.C131T p.P44L CGAGTGGGCAGTG . 112 42 110 0 . 90 46 44 0 0 IL4R 3566 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 27374134 27374134 + Silent SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . IL4R-227 NM_000418 exon11 c.G1461A p.T487T AGAGACGCCCCTC . 117 40 86 0 . 0 0 0 0 0 SETD1A 9739 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 30970101 30970101 + Missense_Mutation SNP T T C novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . SETD1A-93 NM_014712 exon2 c.T49C p.W17R TTCCAGTGGCGGA . 152 46 136 0 . 0 0 0 0 0 SALL1 6299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 51171349 51171349 + Missense_Mutation SNP A A C novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . SALL1-98 NM_002968 exon3 c.T3649G p.F1217V TCTGGAACATTTC . 116 29 133 0 . 7 5 2 0 0 RANBP10 57610 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 67761787 67761787 + Missense_Mutation SNP G G T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . RANBP10-227 NM_020850 exon12 c.C1487A p.P496H CGCCGAGGATGCC . 108 32 118 0 . 0 0 0 0 0 CDK10 8558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 89760632 89760632 + Silent SNP C C T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . CDK10-508 NM_052988 exon9 c.C660T p.I220I CAGCATCGACATG . 158 65 169 0 . 32 6 26 0 0 CAMTA2 23125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 4877742 4877742 + Missense_Mutation SNP T T G novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . CAMTA2-91 NM_001171167 exon12 c.A2023C p.M675L CTGCCATCCGCTT . 193 89 153 0 . 1 0 1 0 0 SLC5A10 125206 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 18880267 18880267 + Missense_Mutation SNP T T A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . SLC5A10-91 NM_001042450 exon9 c.T947A p.I316N TGATCATCATGCC . 134 73 82 1 . 0 0 0 0 0 LGALS9B 284194 broad.mit.edu 37 17 20355185 20355185 + Silent SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . LGALS9B-23 NM_001042685 exon9 c.C681T p.F227F GGTGATGAAAGGC . 243 7 199 0 . 0 0 0 0 0 ASB16 92591 broad.mit.edu 37 17 42255640 42255640 + Missense_Mutation SNP C C G rs192236945 alternate_allele TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . ASB16-227 NM_080863 exon5 c.C1244G p.A415G ACCTGGCCCGACT . 25 6 15 0 C|0.999;T|0.001 0 0 0 0 0 SCRN2 90507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 45916860 45916860 + Missense_Mutation SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . SCRN2-91 NM_138355 exon4 c.C506T p.A169V ACCCACGCCTCAG . 220 108 170 0 . 58 17 41 0 0 NXPH3 11248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 47656051 47656051 + Missense_Mutation SNP C C T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . NXPH3-70 NM_007225 exon2 c.C148T p.R50W CGGAAGCGGGGCC . 169 101 72 0 . 0 0 0 0 0 SCN4A 6329 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 62045582 62045582 + Silent SNP C C T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . SCN4A-93 NM_000334 exon6 c.G837A p.K279K CACACACTTCTGC . 518 129 365 0 . 0 0 0 0 0 SCN4A 6329 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 62045585 62045585 + Silent SNP C C T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . SCN4A-93 NM_000334 exon6 c.G834A p.Q278Q ACACTTCTGCCTC . 504 125 359 0 . 0 0 0 0 0 DENND1C 79958 hgsc.bcm.edu 37 19 6475944 6475944 + Missense_Mutation SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . DENND1C-67 NM_024898 exon11 c.C683T p.T228I CACGAGGTCAGCT . 8 6 4 0 . 0 0 0 0 0 CYP4F22 126410 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 15651480 15651480 + Silent SNP C C T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . CYP4F22-92 NM_173483 exon8 c.C891T p.A297A TAAGGCCAAGCAG . 102 23 98 0 . 0 0 0 0 0 NCAN 1463 broad.mit.edu 37 19 19338433 19338433 + Silent SNP A A C novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . NCAN-94 NM_004386 exon8 c.A2004C p.P668P GGCTCCACCCTCC . 175 27 134 9 . 0 0 0 0 0 MLL4 8085 ucsc.edu;bcgsc.ca 37 19 36210764 36210764 + Missense_Mutation SNP C C A rs60207923 alternate_allele TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . MLL4-697 NM_014727 exon3 c.C515A p.T172N CTCCTACCCCCCC . 200 74 254 1 C|0.998;T|0.002 0 0 0 0 0 CAPN12 147968 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 39226166 39226166 + Silent SNP G G T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . CAPN12-91 NM_144691 exon13 c.C1602A p.I534I TGCGCTGATCACG . 75 26 89 0 . 6 0 6 0 0 PSG5 5673 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 43689069 43689069 + Nonsense_Mutation SNP C C A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . PSG5-93 NM_002781 exon2 c.G295T p.E99X CTGTTTCTCGTCC . 252 79 254 0 . 0 0 0 0 0 LILRB3 11025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 54721052 54721052 + Silent SNP G G T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . LILRB3-93 NM_001081450 exon13 c.C1809A p.T603T TCTAAGGGTCAAG . 189 101 180 0 . 0 0 0 0 0 OSR1 130497 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 19552164 19552164 + Missense_Mutation SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . OSR1-257 NM_145260 exon3 c.C673T p.H225Y TGGAGTGAATATA . 101 9 107 0 . 0 0 0 0 0 PNO1 56902 broad.mit.edu 37 2 68385203 68385203 + Missense_Mutation SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . PNO1-68 NM_020143 exon1 c.G137A p.R46H CGGGCCGCATGGA . 45 4 42 0 . 0 0 0 0 0 ANKRD30BL 554226 bcgsc.ca 37 2 132919192 132919192 + RNA SNP G G A rs111295191 TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . . . . . . AGAGTCGTTGTTG . 382 16 325 8 . 0 0 0 0 0 MARS2 92935 broad.mit.edu 37 2 198570300 198570300 + Silent SNP G G T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . MARS2-92 NM_138395 exon1 c.G171T p.A57A CGCGGCGCCGCAC . 93 9 58 1 . 0 0 0 0 0 UNC80 285175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 210714187 210714187 + Missense_Mutation SNP T T G novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . UNC80-90 NM_032504 exon22 c.T3473G p.F1158C ACAGTTTTGATGA . 171 59 168 0 . 0 0 0 0 0 BCL2L1 598 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 30253881 30253881 + Silent SNP A A G novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . BCL2L1-1084 NM_138578 exon3 c.T573C p.F191F TTCCACAAAAGTA . 137 71 84 0 . 0 0 0 0 0 ADAMTS5 11096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 28305272 28305272 + Missense_Mutation SNP C C G novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . ADAMTS5-229 NM_007038 exon5 c.G1781C p.C594S TTATTACAGTGAC . 198 57 163 0 . 0 0 0 0 0 SEZ6L 23544 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 26761491 26761491 + Missense_Mutation SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . SEZ6L-95 NM_021115 exon13 c.G2753A p.G918E TCCTGGGACAGCC . 149 49 174 0 . 0 0 0 0 0 IP6K2 51447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 48728866 48728866 + Missense_Mutation SNP A A G novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . IP6K2-265 NM_016291 exon4 c.T478C p.Y160H TGTAGTACAAGAC . 146 51 171 0 . 14 8 6 0 0 LAMB2 3913 broad.mit.edu 37 3 49158999 49158999 + Silent SNP C C T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . LAMB2-93 NM_002292 exon31 c.G5127A p.Q1709Q CTGGTACTGATCA . 266 6 234 0 . 291 287 4 0 0 OR5H2 79310 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 98001882 98001882 + Missense_Mutation SNP A A C novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . OR5H2-71 NM_001005482 exon1 c.A151C p.I51L GGTCTGATTGCTC . 275 97 252 0 . 0 0 0 0 0 TPRA1 131601 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 127292425 127292425 + Missense_Mutation SNP G G C rs201165800 alternate_allele TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . TPRA1-90 NM_001136053 exon11 c.C1061G p.P354R TGGCAGGGCATGG . 74 24 66 0 G|0.999;A|0.001 117 54 63 0 0 MUC4 4585 bcgsc.ca 37 3 195509322 195509322 + Silent SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . MUC4-90 NM_018406 exon2 c.C9129T p.V3043V GTCGGTGACAGGA . 488 33 382 11 . 0 0 0 0 0 TNK2 10188 broad.mit.edu;bcgsc.ca 37 3 195615329 195615329 + Missense_Mutation SNP T T C novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . TNK2-957 NM_001010938 exon2 c.A320G p.E107G AGGTCCTCATTCT . 255 8 280 0 . 0 0 0 0 0 SLC26A1 10861 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 982690 982690 + Silent SNP A A G novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . SLC26A1-91 NM_022042 exon3 c.T2037C p.S679S GTGCACACTGAGG . 114 29 106 1 . 0 0 0 0 0 ADD1 118 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 2883755 2883755 + Missense_Mutation SNP C C A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . ADD1-92 NM_014190 exon3 c.C326A p.A109D CAGCAGCTCCGCA . 220 91 161 0 . 0 0 0 0 0 SLC34A2 10568 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 25676246 25676246 + Missense_Mutation SNP C C G novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . SLC34A2-95 NM_006424 exon12 c.C1453G p.L485V AGTTCACTCCAGG . 206 80 174 0 . 0 0 0 0 0 CWH43 80157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 49032879 49032879 + Silent SNP T T G novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . CWH43-93 NM_025087 exon11 c.T1410G p.S470S TGCTTCTAAGCCC . 115 41 142 0 . 0 0 0 0 0 PRKG2 5593 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 82061797 82061797 + Silent SNP A A T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . PRKG2-524 NM_006259 exon11 c.T1434A p.A478A AGCAAAAGCAACA . 156 37 139 0 . 0 0 0 0 0 DSPP 1834 bcgsc.ca 37 4 88537018 88537018 + Silent SNP T T C novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . DSPP-90 NM_014208 exon5 c.T3204C p.D1068D CAGTGATAGCAGT . 361 24 274 8 . 0 0 0 0 0 DSPP 1834 bcgsc.ca 37 4 88537027 88537027 + Missense_Mutation SNP C C A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . DSPP-90 NM_014208 exon5 c.C3213A p.D1071E CAGTGACAGCAGT . 338 20 253 1 . 0 0 0 0 0 FAT1 2195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 187627969 187627969 + Missense_Mutation SNP C C T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . FAT1-34 NM_005245 exon2 c.G3013A p.D1005N CCTTGTCTTTGGC . 262 91 219 0 . 2 0 2 0 0 SKIV2L2 23517 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 54635905 54635905 + Missense_Mutation SNP A A G novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . SKIV2L2-92 NM_015360 exon6 c.A583G p.S195G GCTCTGAGTAACC . 80 24 102 0 . 0 0 0 0 0 VCAN 1462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 82815685 82815685 + Silent SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . VCAN-238 NM_004385 exon7 c.G1560A p.L520L ACCATTGGTAACT . 134 43 148 0 . 0 0 0 0 0 CHD1 1105 ucsc.edu;bcgsc.ca 37 5 98238644 98238644 + Missense_Mutation SNP C C T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . CHD1-274 NM_001270 exon4 c.G397A p.D133N AGTCATCGGAATC . 37 4 37 0 . 0 0 0 0 0 BTNL8 79908 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 180338541 180338541 + Silent SNP C C T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . BTNL8-24 NM_001159708 exon3 c.C600T p.N200N AGAGAACGCCGGG . 96 30 83 1 . 0 0 0 0 0 PHACTR1 221692 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 13283687 13283687 + Missense_Mutation SNP G G C novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . . NM_030948 exon13 c.G1543C p.E515Q CTTCGGGAAAGAA . 124 43 78 0 . 2 2 0 0 0 ZFP57 346171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 29643249 29643249 + Missense_Mutation SNP T T C novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . ZFP57-5 NM_001109809 exon3 c.A266G p.H89R GGCTTATGCAGAA . 218 91 223 0 . 0 0 0 0 0 ABHD16A 7920 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 31657863 31657863 + Missense_Mutation SNP C C T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . ABHD16A-91 NM_021160 exon11 c.G949A p.G317R TGCTTCCAGCAAA . 76 25 91 0 . 0 0 0 0 0 STXBP5 134957 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 147648298 147648298 + Missense_Mutation SNP G G C novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . STXBP5-90 NM_139244 exon18 c.G1966C p.D656H ATGGTTGACTACC . 86 28 83 1 . 0 0 0 0 0 GRB10 2887 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 50742288 50742288 + Silent SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . GRB10-1272 NM_005311 exon3 c.C207T p.A69A GCTGCAGGCCGAG . 91 8 51 0 . 2 2 0 0 0 WDR91 29062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 134893687 134893687 + Missense_Mutation SNP C C A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . WDR91-137 NM_014149 exon3 c.G367T p.A123S ACTCAGCCTGGTT . 521 195 290 0 . 3 0 3 0 0 CSMD1 64478 bcgsc.ca 37 8 2832127 2832127 + Silent SNP T T C novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . CSMD1-86 NM_033225 exon56 c.A8586G p.P2862P GACCCCTGGGTGT . 54 4 64 0 . 0 0 0 0 0 ZFHX4 79776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 77616434 77616434 + Silent SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . ZFHX4-98 NM_024721 exon2 c.G111A p.G37G TGCAGGGATGGAG . 274 84 238 0 . 0 0 0 0 0 TONSL 4796 hgsc.bcm.edu 37 8 145654714 145654714 + Missense_Mutation SNP C C T novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . TONSL-92 NM_013432 exon26 c.G3949A p.A1317T GGACGGCGCAGCC . 7 5 0 0 . 0 0 0 0 0 CD274 29126 broad.mit.edu 37 9 5457410 5457410 + Silent SNP G G A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . CD274-227 NM_014143 exon3 c.G384A p.V128V TACTGTGAAAGTC . 101 3 77 0 . 0 0 0 0 0 FOXD4L5 653427 broad.mit.edu 37 9 70177822 70177822 + Silent SNP T T C rs2921291 TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . . NM_001126334 exon1 c.A162G p.S54S CTGGAGTGACTGC . 234 6 194 1 C|1.000;|0.000 0 0 0 0 0 PTCHD1 139411 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 23411325 23411325 + Missense_Mutation SNP A A G novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . PTCHD1-135 NM_173495 exon3 c.A1690G p.I564V GAGTCTATAGAAT . 41 10 56 1 . 0 0 0 0 0 CTAGE5 4253 broad.mit.edu 37 14 39815176 39815179 + Frame_Shift_Del DEL CTGT CTGT - novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 CTGT CTGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . CTAGE5-90 NM_001247989 exon21 c.1915_1918del p.639_640del GGTAGACTGTCTG . 200 11 220 0 . 0 0 0 0 0 EZH1 2145 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 40880917 40880920 + Frame_Shift_Del DEL AGTA AGTA - novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 AGTA AGTA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . EZH1-229 NM_001991 exon3 c.40_43del p.14_15del . . 93 26 78 0 . 0 0 0 0 0 MYPOP 339344 broad.mit.edu 37 19 46394285 46394285 + Frame_Shift_Del DEL G G - novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . MYPOP-90 NM_001012643 exon3 c.796delC p.Q266fs CCTGCTGGGCCCG . 17 7 21 0 . 0 0 0 0 0 RAD51AP2 729475 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 17692220 17692220 + Frame_Shift_Del DEL T T - novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . RAD51AP2-23 NM_001099218 exon3 c.3331delA p.S1111fs . . 105 17 87 0 . 0 0 0 0 0 MPHOSPH10 10199 broad.mit.edu;bcgsc.ca 37 2 71368372 71368378 + Frame_Shift_Del DEL ATGTAGT ATGTAGT - novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 ATGTAGT ATGTAGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . MPHOSPH10-93 NM_005791 exon7 c.1319_1325del p.440_442del GGGATGATGTAGT . 155 16 187 0 . 0 0 0 0 0 TRMT10C 54931 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 101284160 101284160 + Frame_Shift_Del DEL T T - novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . . NM_017819 exon2 c.535delT p.F179fs . . 46 18 30 0 . 0 0 0 0 0 VCAN 1462 broad.mit.edu 37 5 82836607 82836608 + Frame_Shift_Del DEL AG AG - novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . VCAN-238 NM_004385 exon8 c.7785_7786del p.2595_2596del GCAAACAGATATA . 139 8 146 0 . 0 0 0 0 0 PLS3 5358 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 114880464 114880465 + Frame_Shift_Ins INS - - A novel TCGA-MH-A562-01A-11D-A26P-10 TCGA-MH-A562-10A-01D-A26P-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dddea2e4-b8c3-4157-9d92-6de472e8375a bd8aec5f-0589-436d-9c8e-eaf4e60046e2 . PLS3-193 NM_005032 exon12 c.1335_1336insA p.V445fs . . 141 92 140 0 . 0 0 0 0 0