Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 MECR 51102 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 29557328 29557328 + Missense_Mutation SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . MECR-91 NM_016011 exon1 c.G91A p.A31T AGGAGGCGGCAGG . 30 20 44 0 . 6 1 5 0 0 AGO3 192669 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 36475164 36475164 + Missense_Mutation SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . . NM_024852 exon9 c.C1118T p.A373V GATCTGCACCAGA . 254 99 309 0 . 1 0 1 0 0 INTS3 65123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 153740253 153740253 + Nonsense_Mutation SNP G G T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . INTS3-93 NM_023015 exon21 c.G2194T p.E732X TGCCAGGAGGACG . 95 33 78 0 . 8 5 3 0 0 CFH 3075 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 196654324 196654324 + Silent SNP A A G rs1061147 byfrequency;alternate_allele TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . CFH-566 NM_001014975 exon7 c.A921G p.A307A TACAGCAAAATGC . 239 84 292 0 A|0.353;C|0.647 1 1 0 0 0 PTPRC 5788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 198678922 198678922 + Silent SNP C C T rs200643724 TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . PTPRC-295 NM_002838 exon11 c.C1140T p.N380N TACTAACGCAAGT . 149 40 222 0 C|0.999;T|0.001 0 0 0 0 0 GPR37L1 9283 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 202097357 202097357 + Silent SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . GPR37L1-91 NM_004767 exon2 c.C1119T p.L373L CACCCTCCCAGAG . 108 8 124 0 . 0 0 0 0 0 RCOR3 55758 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 211449723 211449723 + Missense_Mutation SNP G G C novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . RCOR3-91 NM_001136223 exon5 c.G479C p.S160T CCTTTAGTTTTCA . 104 9 105 0 . 1 1 0 0 0 CENPF 1063 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 214815375 214815375 + Nonsense_Mutation SNP G G T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . CENPF-567 NM_016343 exon12 c.G3694T p.E1232X GAGAAGGAGTGCC . 118 33 187 1 . 0 0 0 0 0 CAPN2 824 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 223959597 223959597 + Missense_Mutation SNP C C G novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . CAPN2-523 NM_001748 exon19 c.C1990G p.R664G TTTGTTCGGTGTT . 215 62 215 1 . 220 104 116 0 0 SNAP47 116841 hgsc.bcm.edu;bcgsc.ca 37 1 227946738 227946738 + Missense_Mutation SNP C C A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . SNAP47-91 NM_053052 exon3 c.C675A p.S225R CTTTAGCTCCAAG . 73 4 91 0 . 26 26 0 0 0 SDCCAG8 10806 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 243419490 243419490 + Silent SNP G G A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . SDCCAG8-90 NM_006642 exon1 c.G15A p.P5P GTCCCCGGAGAAC . 123 7 146 0 . 1 1 0 0 0 TAF3 83860 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 8007636 8007636 + Missense_Mutation SNP G G C novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . TAF3-69 NM_031923 exon3 c.G2163C p.K721N GGAGAAGGAAAGA . 82 21 66 0 . 5 3 2 0 0 DHTKD1 55526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 12139749 12139749 + Missense_Mutation SNP G G C novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . DHTKD1-515 NM_018706 exon8 c.G1425C p.E475D GCAGGAGGAGGTG . 125 53 116 0 . 6 3 3 0 0 CSGALNACT2 55454 broad.mit.edu 37 10 43659419 43659419 + Missense_Mutation SNP G G T rs79064394 TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . CSGALNACT2-69 NM_018590 exon5 c.G1086T p.L362F GGTCTTGATGTTT . 154 5 142 2 . 1 1 0 0 0 NCOA4 8031 broad.mit.edu 37 10 51579175 51579175 + Missense_Mutation SNP A A C novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . NCOA4-1042 NM_001145261 exon3 c.A82C p.S28R AGCTCCAGTAATA . 64 7 67 3 . 6 6 0 0 0 DNA2 1763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 70182074 70182074 + Missense_Mutation SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . . NM_001080449 exon17 c.G2605A p.E869K CCAGTTCCAGCTT . 167 58 156 0 . 0 0 0 0 0 HELLS 3070 bcgsc.ca 37 10 96305697 96305697 + Missense_Mutation SNP G G A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . HELLS-92 NM_018063 exon1 c.G19A p.A7T CGGCCCGCGGGCA . 67 36 152 4 . 0 0 0 0 0 HPSE2 60495 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 100481443 100481443 + Silent SNP C C T rs200916817 TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . HPSE2-91 NM_001166246 exon5 c.G927A p.P309P CTTCCTCGGCCGC . 64 7 59 0 C|0.999;T|0.001 0 0 0 0 0 ACADSB 36 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 124800167 124800167 + Silent SNP G G A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . ACADSB-92 NM_001609 exon4 c.G489A p.L163L CTATTTGCCTCAG . 79 20 104 1 . 6 3 3 0 0 FRG2B 441581 broad.mit.edu 37 10 135439107 135439107 + Silent SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . . NM_001080998 exon4 c.G333A p.G111G ACAGTTCCCTGCA . 109 3 135 0 . 0 0 0 0 0 CARNS1 57571 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 67186592 67186592 + Missense_Mutation SNP G G C novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . CARNS1-46 NM_001166222 exon5 c.G730C p.G244R CTGCGGGGAGGGG . 37 20 46 0 . 0 0 0 0 0 DYNC2H1 79659 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 103006543 103006543 + Missense_Mutation SNP A A G novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . DYNC2H1-68 NM_001377 exon17 c.A2440G p.K814E CAGTTTAAGGGAG . 52 26 67 1 . 0 0 0 0 0 C11orf53 341032 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 111156468 111156468 + Missense_Mutation SNP A A C novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . C11orf53-226 NM_198498 exon4 c.A400C p.S134R AGCACGAGTTGCC . 50 16 101 0 . 0 0 0 0 0 TMPRSS13 84000 hgsc.bcm.edu;ucsc.edu 37 11 117789342 117789342 + Missense_Mutation SNP T T C rs75037497 TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . TMPRSS13-91 NM_001206790 exon2 c.A233G p.Q78R GATGCCTGGGCTG . 52 7 73 0 T|0.500;C|0.500 0 0 0 0 0 TMPRSS13 84000 hgsc.bcm.edu;ucsc.edu 37 11 117789345 117789345 + Missense_Mutation SNP G G C rs61900347 TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . TMPRSS13-91 NM_001206790 exon2 c.C230G p.A77G GCCTGGGCTGGAG . 49 6 75 0 G|0.899;C|0.101 0 0 0 0 0 FOXRED1 55572 broad.mit.edu 37 11 126146393 126146393 + Missense_Mutation SNP A A G novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . FOXRED1-90 NM_017547 exon9 c.A1076G p.Y359C GCAACTACCTAGG . 205 5 233 0 . 47 44 3 0 0 SLC6A13 6540 broad.mit.edu 37 12 347126 347126 + Missense_Mutation SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . SLC6A13-90 NM_016615 exon5 c.G529A p.E177K CATTCTCAGAGGT . 220 6 225 0 . 66 65 1 0 0 TPI1 7167 broad.mit.edu;bcgsc.ca 37 12 6976718 6976718 + Silent SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . TPI1-226 NM_001159287 exon1 c.C99T p.L33L GCGCCTCGGCTCC . 69 6 91 0 . 96 91 5 0 0 C14orf39 317761 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 60921717 60921717 + Splice_Site SNP A A T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . C14orf39-94 NM_174978 exon17 c.1503+2T>A . CATATTACCTGAT . 15 8 24 0 . 0 0 0 0 0 ATAD5 79915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 29162089 29162089 + Silent SNP T T A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . ATAD5-93 NM_024857 exon2 c.T990A p.P330P TCACCCTATTCCG . 167 75 189 0 . 0 0 0 0 0 ORMDL3 94103 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 38078866 38078866 + Missense_Mutation SNP G G C novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . ORMDL3-68 NM_139280 exon4 c.C399G p.S133R AAGCACGCTCATC . 141 29 159 0 . 83 47 36 0 0 CEP112 201134 ucsc.edu 37 17 63923752 63923752 + Missense_Mutation SNP G G A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . CEP112-90 NM_001199165 exon19 c.C1928T p.S643L TCCTTTGATTGTT . 34 4 23 0 . 5 5 0 0 0 HELZ 9931 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 65110487 65110487 + Missense_Mutation SNP T T G novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . HELZ-92 NM_014877 exon28 c.A3871C p.I1291L TATTAATTTCAGG . 47 31 21 0 . 3 0 3 0 0 DSC3 1825 bcgsc.ca 37 18 28598133 28598133 + Nonsense_Mutation SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . DSC3-94 NM_024423 exon9 c.G1167A p.W389X GACTCTCCAATTG . 54 4 58 0 . 0 0 0 0 0 CREB3L3 84699 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 4171149 4171149 + Missense_Mutation SNP G G T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . CREB3L3-92 NM_032607 exon8 c.G952T p.A318S AAGTCAGCCCAGA . 115 42 147 0 . 0 0 0 0 0 OR7G3 390883 broad.mit.edu 37 19 9237432 9237432 + Missense_Mutation SNP G G C novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . OR7G3-69 NM_001001958 exon1 c.C195G p.I65M GGACAGGATAGAG . 233 4 257 0 . 0 0 0 0 0 ZNF227 7770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 44739325 44739325 + Nonsense_Mutation SNP A A T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . ZNF227-91 NM_182490 exon6 c.A742T p.K248X GGAGAGAAACCCC . 73 29 99 0 . 1 1 0 0 0 C5AR1 728 broad.mit.edu 37 19 47823729 47823729 + Missense_Mutation SNP G G A rs201394213 TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . C5AR1-93 . . . . GGAGCCGCAGGGC . 146 4 149 0 . 4 4 0 0 0 SIGLEC5 8778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 52131213 52131213 + Missense_Mutation SNP T T A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . SIGLEC5-92 NM_003830 exon5 c.A871T p.T291S TGGGGGTGGCGTT . 93 37 82 0 . 0 0 0 0 0 MOGS 7841 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 74688599 74688599 + Missense_Mutation SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . MOGS-90 NM_006302 exon4 c.G2317A p.E773K GACCCTCCAGATG . 197 56 248 0 . 70 48 22 0 0 ACMSD 130013 hgsc.bcm.edu;broad.mit.edu 37 2 135621133 135621133 + Missense_Mutation SNP G G A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . ACMSD-91 NM_138326 exon5 c.G418A p.G140R TTTCCCGGGGTCC . 98 6 116 0 . 99 94 5 0 0 SSFA2 6744 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 182774650 182774650 + Missense_Mutation SNP C C G novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . SSFA2-153 NM_001130445 exon9 c.C1438G p.P480A GAAGCTCCTCATG . 92 39 120 0 . 1 0 1 0 0 NCKAP1 10787 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 183792879 183792879 + Missense_Mutation SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . NCKAP1-92 NM_205842 exon30 c.G3164A p.G1055E ATGCTTCCTTTGT . 48 14 48 1 . 77 37 40 0 0 TGIF2 60436 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 35219589 35219589 + Missense_Mutation SNP C C A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . TGIF2-92 NM_021809 exon3 c.C469A p.L157M AAGCCCCTGGTGA . 53 30 89 0 . 2 1 1 0 0 SUSD2 56241 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 24583996 24583996 + Missense_Mutation SNP C C A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . SUSD2-91 NM_019601 exon13 c.C2234A p.S745Y CGGGTTCCACCAT . 357 138 472 0 . 3 2 1 0 0 RFPL1 5988 broad.mit.edu 37 22 29837996 29837996 + Missense_Mutation SNP A A G novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . RFPL1-90 NM_021026 exon2 c.A839G p.H280R CACTGCACTTGTT . 195 5 201 2 . 0 0 0 0 0 NEFH 4744 hgsc.bcm.edu 37 22 29885562 29885562 + Missense_Mutation SNP G G A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . NEFH-90 NM_021076 exon4 c.G1933A p.E645K AAGGAGGAAGCAA . 146 49 135 0 . 0 0 0 0 0 CACNG2 10369 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 37098581 37098581 + Missense_Mutation SNP G G T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . CACNG2-90 NM_006078 exon1 c.C41A p.T14N CCAACGGTGGTTA . 149 56 104 0 . 0 0 0 0 0 KCNH8 131096 broad.mit.edu;bcgsc.ca 37 3 19554559 19554559 + Missense_Mutation SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . KCNH8-524 NM_144633 exon13 c.C2177T p.S726F CAGTCTCCCTCTC . 265 13 248 0 . 0 0 0 0 0 TRANK1 9881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 36874430 36874430 + Missense_Mutation SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . TRANK1-24 NM_014831 exon21 c.G6512A p.R2171H TCACAACGCCGCA . 22 10 42 0 . 0 0 0 0 0 KLHDC8B 200942 ucsc.edu;bcgsc.ca 37 3 49212587 49212587 + Missense_Mutation SNP G G A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . KLHDC8B-90 NM_173546 exon5 c.G859A p.G287R GCCATTGGGGGCC . 27 4 41 0 . 0 0 0 0 0 BAP1 8314 hgsc.bcm.edu;bcgsc.ca 37 3 52439275 52439275 + Missense_Mutation SNP C C A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . BAP1-1032 NM_004656 exon11 c.G967T p.A323S ATGGGGCTTGTGC . 84 65 99 0 . 0 0 0 0 0 COL8A1 1295 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 99514774 99514774 + Missense_Mutation SNP G G A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . COL8A1-90 NM_001850 exon5 c.G2029A p.A677T TGGGTTGCTCTAT . 116 82 122 1 . 4 4 0 0 0 XRN1 54464 broad.mit.edu;bcgsc.ca 37 3 142030528 142030528 + Missense_Mutation SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . XRN1-93 NM_019001 exon42 c.G4946A p.S1649N GATGAGCTCTCCC . 101 8 129 1 . 0 0 0 0 0 CLDN11 5010 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 170141043 170141043 + Missense_Mutation SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . CLDN11-90 NM_005602 exon2 c.C319T p.R107W TGCATCCGGATGG . 174 15 210 0 . 1 1 0 0 0 MFN1 55669 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 179082985 179082985 + Missense_Mutation SNP C C G novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . MFN1-155 NM_033540 exon7 c.C725G p.S242C ATGCCTCTGCATC . 86 66 120 0 . 0 0 0 0 0 MUC4 4585 bcgsc.ca 37 3 195510149 195510149 + Missense_Mutation SNP G G A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . MUC4-90 NM_018406 exon2 c.C8302T p.P2768S GAAGAGGGGTGGC . 555 24 467 12 . 0 0 0 0 0 DSPP 1834 hgsc.bcm.edu 37 4 88536475 88536475 + Missense_Mutation SNP A A C novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . DSPP-90 NM_014208 exon5 c.A2661C p.E887D CAACGAAAGCAGC . 356 45 321 0 . 0 0 0 0 0 FGG 2266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 155526043 155526043 + Silent SNP T T C novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . FGG-90 NM_021870 exon9 c.A1305G p.R435R CTCTGGTCTGACC . 93 37 66 0 . 0 0 0 0 0 CDH18 1016 broad.mit.edu;bcgsc.ca 37 5 19612631 19612631 + Missense_Mutation SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . CDH18-159 NM_001167667 exon6 c.G723A p.M241I CCCAGCCATGTCT . 209 7 207 0 . 0 0 0 0 0 AMACR 23600 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 34004755 34004755 + Missense_Mutation SNP A A G rs147265006 TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . AMACR-90 NM_014324 exon3 c.T476C p.M159T GCACACATAAGGC . 398 148 519 2 A|0.999;G|0.000 13 7 6 0 0 TNXB 7148 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 32052212 32052212 + Silent SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . TNXB-90 NM_019105 exon8 c.G3423A p.P1141P CACCAGCGGACCA . 150 53 174 1 . 0 0 0 0 0 THSD7A 221981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 11675888 11675888 + Silent SNP G G A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . THSD7A-71 NM_015204 exon2 c.C891T p.R297R AAGCTCGCGGGCT . 46 21 80 0 . 0 0 0 0 0 ZAN 7455 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 100352929 100352929 + Missense_Mutation SNP C C G novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . ZAN-142 . . . . GGGCCCCTCTGTC . 112 41 98 0 . 0 0 0 0 0 IMMP2L 83943 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 111161447 111161447 + Silent SNP G G A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . IMMP2L-93 NM_032549 exon2 c.C57T p.F19F CACAAAGAAGCCT . 58 17 86 0 . 14 8 6 0 0 KIAA1147 57189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 141365048 141365048 + Silent SNP A A T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . KIAA1147-69 NM_001080392 exon6 c.T891A p.P297P GAAGAAAGGTTTG . 190 65 250 0 . 7 4 3 0 0 CUL1 8454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 148496376 148496376 + Missense_Mutation SNP G G A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . CUL1-226 NM_003592 exon21 c.G2146A p.V716M GCCATCGTGAGAA . 114 42 181 0 . 0 0 0 0 0 DEFA6 1671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 6783427 6783427 + Missense_Mutation SNP G G A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . DEFA6-90 NM_001926 exon1 c.C131T p.A44V TCATTTGCCCCAC . 65 25 101 0 . 0 0 0 0 0 MFHAS1 9258 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 8655002 8655002 + Splice_Site SNP C C A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . MFHAS1-90 NM_004225 exon3 c.2999-1G>T . ACTCCCCTGTAGG . 116 47 120 0 . 0 0 0 0 0 PNMA2 10687 broad.mit.edu 37 8 26365721 26365721 + Nonsense_Mutation SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . PNMA2-90 NM_007257 exon3 c.G551A p.W184X TCCAACCAGACCT . 91 3 100 0 . 2 2 0 0 0 ADAM9 8754 ucsc.edu 37 8 38871523 38871523 + Silent SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . ADAM9-227 NM_003816 exon4 c.C294T p.N98N TTACAACAAGGAA . 34 4 45 0 . 2 2 0 0 0 ZC3H3 23144 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 144522452 144522452 + Silent SNP G G T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . ZC3H3-91 NM_015117 exon11 c.C2574A p.P858P GCAGTGGGGAGGT . 29 15 46 0 . 12 8 4 0 0 SETX 23064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 135163729 135163729 + Missense_Mutation SNP A A G novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . SETX-93 NM_015046 exon17 c.T6218C p.L2073S GAAGGTAACTCTT . 63 25 78 0 . 0 0 0 0 0 FAM47A 158724 hgsc.bcm.edu;broad.mit.edu 37 X 34148936 34148936 + Missense_Mutation SNP C C T novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . FAM47A-134 NM_203408 exon1 c.G1460A p.R487Q GACCTCCGACGTG . 70 4 91 0 . 0 0 0 0 0 TMEM164 84187 bcgsc.ca 37 X 109352336 109352336 + Missense_Mutation SNP C C G novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . TMEM164-193 NM_032227 exon4 c.C469G p.L157V GGAGCTCTTCTGG . 57 4 78 1 . 0 0 0 0 0 GBF1 8729 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 104123472 104123472 + Frame_Shift_Del DEL A A - novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . GBF1-91 NM_001199378 exon17 c.2023delA p.K675fs . . 69 19 76 0 . 0 0 0 0 0 LAMA3 3909 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 21511115 21511115 + Frame_Shift_Del DEL G G - novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . LAMA3-100 NM_198129 exon65 c.8526delG p.T2842fs . . 49 13 52 0 . 0 0 0 0 0 LAMA3 3909 hgsc.bcm.edu 37 18 21511115 21511118 + Frame_Shift_Del DEL GTAT GTAT - novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 GTAT GTAT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . LAMA3-100 NM_198129 exon65 c.8526_8529del p.2842_2843del . . 54 14 51 0 . 0 0 0 0 0 LAMA3 3909 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 21511118 21511118 + Nonsense_Mutation DEL T T - novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . LAMA3-100 NM_198129 exon65 c.8529delT p.Y2843X . . 57 13 54 0 . 0 0 0 0 0 ZNF233 353355 hgsc.bcm.edu 37 19 44778797 44778797 + Frame_Shift_Del DEL T T - novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . ZNF233-92 NM_001207005 exon5 c.1984delT p.L662fs . . 56 20 61 0 . 0 0 0 0 0 BAP1 8314 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 52439271 52439271 + Frame_Shift_Del DEL G G - novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . BAP1-1032 NM_004656 exon11 c.971delC p.P324fs . . 81 60 100 0 . 0 0 0 0 0 PPWD1 23398 broad.mit.edu;bcgsc.ca 37 5 64867921 64867921 + Frame_Shift_Del DEL C C - novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . PPWD1-91 NM_015342 exon5 c.777delC p.F259fs TAAATTCCCCAAA . 35 9 52 0 . 0 0 0 0 0 CCDC168 643677 broad.mit.edu;bcgsc.ca 37 13 103402101 103402102 + Frame_Shift_Ins INS - - A novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . . NM_001146197 exon4 c.946_947insT p.T316fs GACTAGTAAATTG . 26 9 30 0 . 0 0 0 0 0 HNF4A 3172 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 43052875 43052876 + Frame_Shift_Ins INS - - C novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . HNF4A-227 NM_178849 exon8 c.1110_1111insC p.L370fs . . 148 50 185 0 . 0 0 0 0 0 NEFH 4744 broad.mit.edu 37 22 29885622 29885623 + In_Frame_Ins INS - - AGGAAG novel TCGA-MH-A560-01A-11D-A26P-10 TCGA-MH-A560-10A-01D-A26P-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf5deb22-f7eb-409d-a0e4-882716199c39 8fa7c1a8-e64c-4ee8-9012-187aa9da1210 . NEFH-90 NM_021076 exon4 c.1993_1994insAGGAAG p.K665delinsKEE CCTGAGAAGGCCA . 280 0 394 0 . 0 0 0 0 0