Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 UBR4 23352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 19482811 19482811 + Missense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . UBR4-612 NM_020765 exon42 c.C6026T p.P2009L GAACCAGGTAACC . 418 155 474 1 . 9 6 3 0 0 ADPRHL2 54936 broad.mit.edu 37 1 36557328 36557328 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ADPRHL2-91 NM_017825 exon3 c.C418T p.R140W CCTGCCCGGGCCC . 104 5 111 1 . 20 20 0 0 0 STK40 83931 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 36820910 36820910 + Missense_Mutation SNP A A T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . STK40-83 NM_032017 exon6 c.T467A p.L156H TTGATGAGGTCAG . 187 66 215 0 . 7 6 1 0 0 KIAA0754 643314 broad.mit.edu 37 1 39880152 39880152 + Silent SNP A A T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . . NM_015038 exon1 c.A4215T p.V1405V TGAGGTAATTGTC . 89 22 67 2 . 0 0 0 0 0 HSPB11 51668 broad.mit.edu;bcgsc.ca 37 1 54395757 54395757 + Missense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . HSPB11-90 NM_016126 exon3 c.C160T p.H54Y GTTTGTGGAAACA . 132 5 73 0 . 10 10 0 0 0 DNAJC6 9829 broad.mit.edu 37 1 65775557 65775557 + Silent SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . DNAJC6-272 NM_001256864 exon1 c.C129T p.A43A GAACGCCGGGGCA . 53 20 47 0 . 0 0 0 0 0 CELSR2 1952 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 109807154 109807154 + Missense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . CELSR2-526 NM_001408 exon11 c.G5368A p.G1790S GAGCAAGGCTGTA . 126 50 135 0 . 10 6 4 0 0 ADAMTSL4 54507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 150531493 150531493 + Missense_Mutation SNP G G T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ADAMTSL4-92 NM_019032 exon16 c.G2615T p.S872I TTGGGAGTGGGGC . 29 19 21 0 . 5 2 3 0 0 TCHHL1 126637 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 152059687 152059687 + Silent SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . TCHHL1-92 NM_001008536 exon3 c.G471A p.V157V TGGGTCCACTCTG . 175 54 180 1 . 0 0 0 0 0 KCNN3 3782 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 154744543 154744543 + Silent SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . KCNN3-91 NM_001204087 exon3 c.G1356A p.K452K GAGCGTCTTCATG . 122 50 167 1 . 0 0 0 0 0 ELK4 2005 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 205588957 205588957 + Missense_Mutation SNP C C G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ELK4-658 NM_021795 exon3 c.G1217C p.X406S AACTTTCACATGA . 75 27 58 0 . 1 1 0 0 0 PRKCQ 5588 broad.mit.edu 37 10 6557067 6557067 + Missense_Mutation SNP T T G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . PRKCQ-1380 NM_006257 exon2 c.A31C p.N11H CAAAGTTGGACAA . 106 9 95 3 . 2 2 0 0 0 PCDH15 65217 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 55600213 55600213 + Missense_Mutation SNP C C A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . PCDH15-193 NM_001142763 exon30 c.G3865T p.V1289F CTACGACCTTGGC . 109 44 180 1 . 0 0 0 0 0 NRG3 10718 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 83635808 83635808 + Missense_Mutation SNP T T C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . NRG3-522 NM_001165972 exon1 c.T712C p.S238P CACGATTCTACTC . 150 62 125 0 . 0 0 0 0 0 KIF11 3832 bcgsc.ca 37 10 94373230 94373230 + Missense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . KIF11-227 NM_004523 exon8 c.G886A p.G296R ACTTTGGGAAGGG . 66 4 61 0 . 0 0 0 0 0 CYP2C8 1558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 96818110 96818110 + Missense_Mutation SNP G G C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . CYP2C8-90 NM_000770 exon5 c.C801G p.F267L GATCAGGAAGCAA . 121 48 68 0 . 0 0 0 0 0 SORBS1 10580 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 97096528 97096528 + Missense_Mutation SNP T T G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . SORBS1-155 NM_001034954 exon28 c.A3389C p.K1130T TCTGCTTTCCTCT . 116 50 93 0 . 0 0 0 0 0 MARK2 2011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 63671476 63671476 + Silent SNP C C G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . MARK2-766 NM_001039469 exon15 c.C1533G p.S511S AGGGTCCCGGGCC . 38 13 24 0 . 3 1 2 0 0 DPF2 5977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 65107956 65107956 + Missense_Mutation SNP C C G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . DPF2-91 NM_006268 exon2 c.C133G p.Q45E GACTCACAGACCG . 137 53 165 0 . 13 9 4 0 0 ADRBK1 156 bcgsc.ca 37 11 67048958 67048958 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ADRBK1-521 NM_001619 exon9 c.C676T p.R226C AAAAAGCGCATCA . 62 4 45 0 . 13 13 0 0 0 FAT3 120114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 92599961 92599961 + Missense_Mutation SNP T T A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . FAT3-73 NM_001008781 exon21 c.T11713A p.L3905M GGAATCTTGGGCA . 102 43 88 0 . 0 0 0 0 0 ALKBH8 91801 ucsc.edu 37 11 107423870 107423870 + Missense_Mutation SNP T T C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ALKBH8-68 NM_138775 exon5 c.A559G p.N187D TGTTGTTCTCATA . 38 4 15 0 . 1 1 0 0 0 CCDC15 80071 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 124847425 124847425 + Missense_Mutation SNP G G C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . CCDC15-69 NM_025004 exon6 c.G682C p.G228R ATAAGAGGAGAGT . 57 19 24 0 . 0 0 0 0 0 STT3A 3703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 125478106 125478106 + Missense_Mutation SNP T T G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . STT3A-90 NM_152713 exon9 c.T883G p.F295V CAACAATTTGAAG . 96 43 105 0 . 21 6 15 0 0 IQSEC3 440073 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 275007 275007 + Silent SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . IQSEC3-560 NM_001170738 exon11 c.G2922A p.L974L GGACCTGAAGGAG . 195 100 143 0 . 0 0 0 0 0 CD163L1 283316 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 7527336 7527336 + Silent SNP G G T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . CD163L1-100 NM_174941 exon13 c.C3111A p.R1037R CACTAGGCGGAGC . 183 53 142 1 . 0 0 0 0 0 SCAF11 9169 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 46342224 46342224 + Missense_Mutation SNP T T C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . SCAF11-93 NM_004719 exon5 c.A394G p.I132V ACCTTATACAGCT . 25 13 25 0 . 0 0 0 0 0 MTERFD3 80298 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 107371368 107371368 + Missense_Mutation SNP A A C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . MTERFD3-68 NM_001033050 exon3 c.T1125G p.F375L AGGGTTAAATAAT . 124 68 54 0 . 8 6 2 0 0 DIABLO 56616 bcgsc.ca 37 12 122710521 122710521 + Missense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . DIABLO-659 NM_138929 exon2 c.C41T p.S14L AAGAATGAAGTTA . 52 4 33 0 . 1 1 0 0 0 MMP17 4326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 132334421 132334421 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . MMP17-226 NM_016155 exon9 c.C1279T p.P427S AGCCTCCCGCCTG . 270 85 217 0 . 0 0 0 0 0 SUCLA2 8803 broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 48571053 48571053 + Missense_Mutation SNP C C G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . SUCLA2-226 NM_003850 exon2 c.G196C p.E66Q CAGCTTCTTGCAA . 187 55 115 1 . 10 6 4 0 0 STK24 8428 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 99127511 99127511 + Missense_Mutation SNP G G T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . STK24-979 NM_003576 exon4 c.C468A p.D156E TTTAATGTCTCTG . 123 25 119 0 . 0 0 0 0 0 CIDEB 27141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 24775587 24775587 + Missense_Mutation SNP G G C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . CIDEB-90 NM_014430 exon5 c.C329G p.P110R CTTGTAGGGCTCC . 150 51 139 0 . 6 4 2 0 0 ACTR10 55860 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 58680398 58680398 + Missense_Mutation SNP G G C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ACTR10-90 NM_018477 exon6 c.G500C p.G167A CCCTAGGAGGAAA . 27 16 34 0 . 20 10 10 0 0 SPTLC2 9517 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 78036838 78036838 + Missense_Mutation SNP C C A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . SPTLC2-92 NM_004863 exon5 c.G645T p.K215N TTCATGCTTGTCC . 75 34 64 0 . 0 0 0 0 0 C14orf159 80017 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 91681816 91681816 + Silent SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . C14orf159-92 NM_001102368 exon13 c.C1632T p.H544H TGTCCACAGTCAG . 95 39 117 0 . 42 18 24 0 0 AHNAK2 113146 broad.mit.edu 37 14 105406110 105406110 + Silent SNP A A C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . AHNAK2-47 NM_138420 exon7 c.T15678G p.G5226G TGCTTCACCCCCT . 95 23 91 9 . 32 32 0 0 0 MGA 23269 bcgsc.ca 37 15 42057124 42057124 + Silent SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . MGA-522 NM_001164273 exon23 c.C7785T p.N2595N TGCCAACCTTGTG . 135 5 157 0 . 0 0 0 0 0 ELL3 80237 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 44066413 44066413 + Missense_Mutation SNP A A C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ELL3-91 NM_025165 exon9 c.T1005G p.I335M TCTTTTAATCTCT . 144 58 160 1 . 1 0 1 0 0 FAM63B 54629 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 59139573 59139573 + Silent SNP A A T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . FAM63B-90 NM_001040450 exon7 c.A1446T p.V482V CAACGTAGATGGT . 48 17 37 0 . 4 3 1 0 0 DAPK2 23604 broad.mit.edu;ucsc.edu 37 15 64200745 64200745 + Missense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . DAPK2-333 NM_014326 exon12 c.C1087T p.P363S TCCGTGGGTGGAG . 48 10 60 1 . 0 0 0 0 0 ACAN 176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 89400337 89400337 + Missense_Mutation SNP T T A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ACAN-25 NM_001135 exon12 c.T4521A p.S1507R TGTCAGTGAACTT . 50 13 39 0 . 0 0 0 0 0 RBBP6 5930 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 24581079 24581079 + Missense_Mutation SNP A A T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . RBBP6-230 NM_006910 exon17 c.A3068T p.N1023I GGAAGAATGATGG . 80 28 37 0 . 1 0 1 0 0 CHST6 4166 bcgsc.ca 37 16 75513372 75513372 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . CHST6-90 NM_021615 exon3 c.G355A p.D119N AGAGGTCGGACAG . 95 61 32 1 . 0 0 0 0 0 ARHGEF15 22899 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 8215790 8215790 + Missense_Mutation SNP T T G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ARHGEF15-230 NM_025014 exon2 c.T433G p.S145A TCTGCCTCAGCTC . 74 35 54 0 . 1 1 0 0 0 TVP23C 201158 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA . 402 33 175 11 . 20 3 17 0 0 FBXO47 494188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 37099134 37099134 + Missense_Mutation SNP A A G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . FBXO47-90 NM_001008777 exon9 c.T980C p.L327P ATTAGGAGACGTG . 101 34 86 0 . 0 0 0 0 0 COPZ2 51226 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 46103806 46103806 + Silent SNP C C G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . . . . . . CAATAACGACCAT . 60 16 36 0 . 20 12 8 0 0 AMZ2 51321 hgsc.bcm.edu;bcgsc.ca 37 17 66246341 66246341 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . AMZ2-22 NM_001033574 exon2 c.C13T p.R5W ATAATACGGCACT . 59 5 30 0 . 0 0 0 0 0 C17orf70 80233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 79518169 79518169 + Silent SNP A A G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . C17orf70-92 NM_025161 exon3 c.T351C p.P117P GTCCACAGGGATC . 559 133 446 1 . 19 15 4 0 0 DLGAP1 9229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 3508641 3508641 + Missense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . DLGAP1-229 NM_001242761 exon11 c.C2498T p.T833I ACTGCGGTTCGGA . 70 24 66 0 . 1 1 0 0 0 RALBP1 10928 broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 9524704 9524704 + Missense_Mutation SNP C C G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . RALBP1-522 NM_006788 exon5 c.C1166G p.P389R CGATGCCCACGCT . 124 48 130 1 . 26 13 13 0 0 DSG4 147409 broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 28966661 28966661 + Missense_Mutation SNP T T A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . DSG4-177 NM_001134453 exon3 c.T95A p.F32Y AGGAATTTGACAT . 160 65 131 2 . 0 0 0 0 0 DSG2 1829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 29116286 29116286 + Silent SNP T T C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . DSG2-563 NM_001943 exon11 c.T1545C p.V515V GAATGTTACTGCA . 109 35 118 0 . 29 18 11 0 0 UBXN6 80700 ucsc.edu 37 19 4453972 4453972 + Missense_Mutation SNP A A G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . UBXN6-90 NM_025241 exon2 c.T202C p.S68P CCCGGGACTGCTT . 12 4 13 0 . 73 39 34 0 0 LRRC8E 80131 broad.mit.edu 37 19 7964010 7964010 + Silent SNP T T G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . LRRC8E-92 NM_001268284 exon4 c.T603G p.G201G GGAGGGTGAGAAG . 93 28 81 16 . 1 1 0 0 0 ZNF799 90576 ucsc.edu;bcgsc.ca 37 19 12502160 12502160 + Nonsense_Mutation SNP G G T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ZNF799-74 NM_001080821 exon4 c.C1052A p.S351X TTCAGTGAACTAG . 91 35 80 2 . 4 1 3 0 0 RDH13 112724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 55570627 55570627 + Missense_Mutation SNP C C A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . RDH13-92 NM_001145971 exon2 c.G82T p.G28W AAGCCCCACCGGT . 87 37 69 0 . 12 7 5 0 0 GEN1 348654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 17962535 17962535 + Missense_Mutation SNP C C G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . GEN1-359 NM_182625 exon14 c.C2056G p.Q686E TATCCTCAGGATA . 108 54 32 0 . 1 1 0 0 0 ITSN2 50618 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 24469667 24469667 + Silent SNP A A G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ITSN2-539 NM_147152 exon28 c.T3384C p.P1128P CATACCAGGATGA . 71 35 28 0 . 0 0 0 0 0 NRBP1 29959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 27660178 27660178 + Missense_Mutation SNP A A T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . NRBP1-334 NM_013392 exon10 c.A854T p.Q285L TGCCACAGGAAGC . 415 233 381 2 . 57 19 38 0 0 RFX8 731220 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 102014128 102014128 + Missense_Mutation SNP G G T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . . NM_001145664 exon12 c.C1304A p.P435H CCCATAGGAAGGC . 176 50 138 0 . 0 0 0 0 0 NPHP1 4867 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 110922202 110922202 + Missense_Mutation SNP A A T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . NPHP1-92 NM_207181 exon8 c.T834A p.N278K CATCCTATTTCGC . 130 38 88 0 . 2 0 2 0 0 CLASP1 23332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 122161975 122161975 + Missense_Mutation SNP G G C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . CLASP1-91 NM_015282 exon26 c.C2705G p.T902S ATCCGAGTGAAGA . 160 44 154 0 . 8 5 3 0 0 KIF1A 547 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 241725900 241725900 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . KIF1A-91 NM_001244008 exon6 c.G460A p.V154I CACGGACGCGCTC . 238 22 203 0 . 0 0 0 0 0 NCOA3 8202 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 46254225 46254225 + Silent SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . NCOA3-229 NM_181659 exon5 c.G357A p.Q119Q ACTTCAGGCAAGT . 42 15 18 0 . 0 0 0 0 0 ADNP 23394 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 49509272 49509272 + Missense_Mutation SNP A A G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ADNP-92 NM_015339 exon5 c.T1979C p.L660P TAGGTGAGCTTTT . 233 102 220 0 . 17 7 10 0 0 LIPI 149998 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 15561570 15561570 + Nonsense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . LIPI-70 NM_198996 exon2 c.C280T p.Q94X TCTTTTGTGTGTT . 155 46 94 0 . 0 0 0 0 0 HLCS 3141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 38309141 38309141 + Missense_Mutation SNP C C G rs148324626 TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . HLCS-157 NM_000411 exon5 c.G604C p.E202Q TGTCCTCCAGCAG . 154 54 184 0 C|1.000;G|0.000 3 3 0 0 0 TSPEAR 54084 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 45949793 45949793 + Silent SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . TSPEAR-244 NM_144991 exon5 c.C678T p.T226T CCTTGGGGTGGCG . 28 12 23 0 . 0 0 0 0 0 IL17RA 23765 hgsc.bcm.edu 37 22 17566096 17566096 + Silent SNP C C A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . IL17RA-92 NM_014339 exon1 c.C115A p.R39R GACCACCGGGCGC . 8 8 1 0 . 1 0 1 0 0 HIC2 23119 ucsc.edu 37 22 21800382 21800382 + Missense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . HIC2-703 NM_015094 exon3 c.G1198A p.E400K GAGGAGGAGAACG . 21 4 10 0 . 0 0 0 0 0 CSNK1E 1454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 38690131 38690131 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . CSNK1E-1193 NM_001894 exon9 c.G1202A p.R401Q GGGATCCGGGAGA . 53 14 51 0 . 10 8 2 0 0 SHANK3 85358 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 51160300 51160300 + Missense_Mutation SNP C C G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . SHANK3-69 NM_033517 exon21 c.C3997G p.P1333A CCACCCCCTGCCC . 36 10 34 0 . 0 0 0 0 0 FYCO1 79443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 46009857 46009857 + Missense_Mutation SNP C C A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . FYCO1-91 NM_024513 exon8 c.G969T p.E323D TCCTAGCTCCAGG . 47 11 79 0 . 9 5 4 0 0 RBM5 10181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 50155814 50155814 + Nonsense_Mutation SNP T T A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . RBM5-278 NM_005778 exon25 c.T2373A p.Y791X CGCATATGGTTTG . 150 63 172 0 . 43 28 15 0 0 KIAA1524 57650 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 108288411 108288411 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . KIAA1524-92 NM_020890 exon9 c.G938A p.R313H ATATGGCGCAGCT . 276 111 195 2 . 0 0 0 0 0 WDR52 55779 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 113120585 113120585 + Missense_Mutation SNP A A C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . WDR52-90 NM_001164496 exon10 c.T1172G p.I391R TCCCATATCTTGT . 81 36 38 0 . 0 0 0 0 0 KALRN 8997 broad.mit.edu 37 3 124209630 124209630 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . KALRN-738 NM_003947 exon30 c.C4480T p.R1494W AAGGGGCGGGAGC . 80 5 77 0 . 0 0 0 0 0 CCRL1 51554 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 132319273 132319273 + Missense_Mutation SNP A A C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . CCRL1-658 NM_178445 exon1 c.A32C p.Y11S CAGATTATTATTA . 231 84 196 1 . 1 0 1 0 0 MYNN 55892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 169496621 169496621 + Missense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . MYNN-91 NM_001185118 exon4 c.G332A p.C111Y CTAAATGCAAAAT . 81 32 75 0 . 2 0 2 0 0 KNG1 3827 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 186435425 186435425 + Missense_Mutation SNP G G T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . KNG1-92 NM_000893 exon1 c.G94T p.D32Y GACAAGGATTTAT . 157 37 129 0 . 0 0 0 0 0 CPZ 8532 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 8607801 8607801 + Silent SNP G G C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . CPZ-93 NM_001014447 exon5 c.G795C p.L265L GTACCTGTGCTCT . 206 71 175 1 . 0 0 0 0 0 TBC1D19 55296 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 26585819 26585819 + Silent SNP T T C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . TBC1D19-153 NM_018317 exon1 c.T4C p.L2L GAAATGTTGCAGG . 70 29 54 0 . 2 1 1 0 0 N4BP2 55728 ucsc.edu 37 4 40122111 40122111 + Missense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . N4BP2-602 NM_018177 exon9 c.G2380A p.D794N CCAGTTGATAAGA . 45 4 26 0 . 0 0 0 0 0 GRSF1 2926 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 71702003 71702003 + Missense_Mutation SNP A A G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . . NM_002092 exon2 c.T386C p.L129P GGTGGAAGGTCTT . 154 46 141 0 . 30 15 15 0 0 TBC1D9 23158 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 141600812 141600812 + Silent SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . TBC1D9-23 NM_015130 exon4 c.C546T p.S182S GTTAATGCTGAGG . 82 30 61 0 . 3 1 2 0 0 EGFLAM 133584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 38418272 38418272 + Silent SNP C C A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . EGFLAM-187 NM_001205301 exon12 c.C1599A p.G533G TCAAGGCTGTGTG . 120 35 153 0 . 0 0 0 0 0 DAB2 1601 broad.mit.edu 37 5 39383200 39383200 + Silent SNP A A G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . DAB2-227 NM_001343 exon10 c.T861C p.F287F GGTGGGAAAGAAG . 183 6 182 0 . 28 27 1 0 0 GPR98 84059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 89979468 89979468 + Silent SNP T T C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . GPR98-103 NM_032119 exon28 c.T5730C p.D1910D TCCTGATGGTGAT . 108 38 97 0 . 0 0 0 0 0 STK10 6793 hgsc.bcm.edu 37 5 171471934 171471934 + Silent SNP T T G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . STK10-1022 NM_005990 exon19 c.A2859C p.P953P CTTGCTTGGGGTG . 98 5 95 0 . 8 8 0 0 0 TNXB 7148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 32038155 32038155 + Missense_Mutation SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . TNXB-90 NM_019105 exon14 c.G5027A p.R1676H CCAAGGCGGGGTG . 82 27 49 0 . 1 1 0 0 0 PKHD1 5314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 51768400 51768400 + Missense_Mutation SNP T T G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . PKHD1-603 NM_170724 exon43 c.A6991C p.I2331L CCTCTATAACATT . 118 41 97 0 . 0 0 0 0 0 MDN1 23195 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 90459294 90459294 + Nonsense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . MDN1-100 NM_014611 exon25 c.C3583T p.Q1195X GATTTTGGGTGGC . 138 70 138 1 . 0 0 0 0 0 BBS9 27241 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 33380559 33380559 + Missense_Mutation SNP G G C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . BBS9-230 NM_014451 exon11 c.G1249C p.V417L GTCGTGGTTTCTC . 94 34 19 0 . 9 4 5 0 0 GBAS 2631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 56046042 56046042 + Splice_Site SNP G G C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . GBAS-514 NM_001483 exon3 c.233-1G>C . GTTTCAGTTCACA . 213 89 102 0 . 0 0 0 0 0 SLC13A4 26266 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 135370357 135370357 + Silent SNP C C A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . SLC13A4-90 NM_012450 exon14 c.G1518T p.L506L TGCCAGCAGGGTG . 243 88 157 1 . 0 0 0 0 0 MLL3 58508 broad.mit.edu 37 7 151921114 151921114 + Nonsense_Mutation SNP A A T rs4024337 TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . MLL3-1398 NM_170606 exon20 c.T3309A p.C1103X TTGTCTACATTGC . 450 9 239 1 . 0 0 0 0 0 ANK1 286 broad.mit.edu;bcgsc.ca 37 8 41582026 41582026 + Missense_Mutation SNP T T G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ANK1-716 NM_001142446 exon7 c.A758C p.N253T GCCACGTTGAGGT . 42 7 54 0 . 0 0 0 0 0 TRPM6 140803 broad.mit.edu 37 9 77448994 77448994 + Missense_Mutation SNP G G A novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . TRPM6-335 NM_017662 exon6 c.C589T p.H197Y AGGAATGAGAGGA . 175 5 134 0 . 0 0 0 0 0 GOLGA2 2801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 131021446 131021446 + Silent SNP C C T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . GOLGA2-91 NM_004486 exon19 c.G2016A p.Q672Q CCTCACCTGGGTT . 61 22 73 0 . 1 0 1 0 0 C9orf78 51759 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 132593305 132593305 + Silent SNP G G T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . C9orf78-90 NM_016520 exon6 c.C387A p.I129I TTCCACGATCCCT . 123 45 151 0 . 30 13 17 0 0 WWC3 55841 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 10066562 10066562 + Missense_Mutation SNP A A C novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . WWC3-134 NM_015691 exon8 c.A674C p.K225T ATGATAAAACAAG . 38 27 25 0 . 6 0 6 0 0 SSX5 6758 broad.mit.edu 37 X 48054486 48054486 + Missense_Mutation SNP G G T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . SSX5-90 NM_021015 exon3 c.C149A p.A50D CTGCTGGCTGGCT . 260 6 236 1 . 0 0 0 0 0 RLIM 51132 broad.mit.edu 37 X 73811995 73811995 + Silent SNP G G T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . RLIM-228 NM_183353 exon5 c.C1155A p.P385P ACGAATGGGAATT . 79 4 104 0 . 1 1 0 0 0 XIAP 331 bcgsc.ca 37 X 123020210 123020210 + Missense_Mutation SNP G G T novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . XIAP-1084 NM_001204401 exon2 c.G698T p.R233L TGGGCCGGAATCT . 41 23 46 2 . 0 0 0 0 0 PNCK 139728 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 152938463 152938463 + Splice_Site SNP C C G novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . PNCK-207 NM_001135740 exon3 c.119+1G>C . CACTCACGAGCCG . 91 66 112 6 . 0 0 0 0 0 LAMTOR2 28956 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 156027791 156027791 + Frame_Shift_Del DEL G G - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . LAMTOR2-523 NM_014017 exon3 c.254delG p.R85fs . . 315 118 311 0 . 0 0 0 0 0 GPR123 84435 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 134912186 134912187 + Frame_Shift_Del DEL TT TT - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 TT TT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . GPR123-90 NM_001083909 exon4 c.174_175del p.58_59del . . 55 18 45 0 . 0 0 0 0 0 C2CD2L 9854 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 118984691 118984704 + Frame_Shift_Del DEL TTTCCAAGGTAACA TTTCCAAGGTAACA - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 TTTCCAAGGTAACA TTTCCAAGGTAACA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . C2CD2L-68 NM_014807 exon12 c.1619_1626del p.540_542del . . 126 30 141 0 . 0 0 0 0 0 MARK3 4140 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 103969341 103969341 + Frame_Shift_Del DEL G G - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . MARK3-360 NM_001128918 exon18 c.2039delG p.R680fs . . 203 69 303 0 . 0 0 0 0 0 SLC5A6 8884 hgsc.bcm.edu;bcgsc.ca 37 2 27428892 27428892 + Splice_Site DEL A A - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . SLC5A6-92 NM_021095 exon7 c.579+2T>- . . . 512 109 453 0 . 0 0 0 0 0 RANBP2 5903 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 109380179 109380179 + Frame_Shift_Del DEL A A - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . RANBP2-675 NM_006267 exon20 c.3184delA p.N1062fs . . 110 53 88 0 . 0 0 0 0 0 SLC32A1 140679 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 37353586 37353607 + Frame_Shift_Del DEL GGGCGCTGAAGCGCCCGTCGAG GGGCGCTGAAGCGCCCGTCGAG - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 GGGCGCTGAAGCGCCCGTCGAG GGGCGCTGAAGCGCCCGTCGAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . SLC32A1-90 NM_080552 exon1 c.219_240del p.73_80del . . 111 42 30 0 . 0 0 0 0 0 IFT122 55764 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 129214436 129214436 + Frame_Shift_Del DEL T T - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . IFT122-92 NM_052985 exon19 c.2347delT p.F783fs . . 251 114 294 0 . 0 0 0 0 0 ATP11B 23200 broad.mit.edu 37 3 182607235 182607235 + Frame_Shift_Del DEL T T - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ATP11B-93 NM_014616 exon25 c.2881delT p.F961fs AAAACATTTCTTT . 17 9 10 0 . 0 0 0 0 0 NSD1 64324 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 176709581 176709584 + Frame_Shift_Del DEL AAGT AAGT - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 AAGT AAGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . NSD1-188 NM_022455 exon19 c.6008_6009del p.2003_2003del . . 83 24 101 0 . 0 0 0 0 0 KCNK5 8645 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 39159405 39159412 + Frame_Shift_Del DEL TTGTGGAC TTGTGGAC - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 TTGTGGAC TTGTGGAC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . KCNK5-227 NM_003740 exon5 c.754_761del p.252_254del . . 95 20 169 0 . 0 0 0 0 0 AKAP12 9590 hgsc.bcm.edu;bcgsc.ca 37 6 151671659 151671659 + Frame_Shift_Del DEL C C - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . AKAP12-293 NM_005100 exon4 c.2133delC p.H711fs . . 142 50 155 0 . 0 0 0 0 0 ZBTB2 57621 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 151686673 151686676 + Frame_Shift_Del DEL TTTC TTTC - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 TTTC TTTC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ZBTB2-91 NM_020861 exon3 c.1525_1528del p.509_510del . . 127 39 137 0 . 0 0 0 0 0 TAF6 6878 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 99711723 99711723 + Frame_Shift_Del DEL T T - novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . TAF6-91 NM_001190415 exon2 c.221delA p.Q74fs . . 421 177 276 0 . 0 0 0 0 0 GCM1 8521 hgsc.bcm.edu;bcgsc.ca 37 6 52993368 52993369 + In_Frame_Ins INS - - AAA novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . GCM1-90 NM_003643 exon6 c.947_948insTTT p.Y316delinsFY . . 112 22 140 0 . 0 0 0 0 0 OR13G1 441933 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 247836182 247836183 + Missense_Mutation DNP CG CG AA novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 CG CG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . OR13G1-69 NM_001005487 exon1 c.C161T p.T54I ATGGGCGTATGCA . 155.0 51.0 131.0 0.0 G|0.999;A|0.000 0 0 0 0 0 ADCY3 109 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 25051028 25051029 + Missense_Mutation DNP GA GA AC novel TCGA-MH-A55W-01A-11D-A26P-10 TCGA-MH-A55W-10A-01D-A26P-10 GA GA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2425a532-f562-423a-88f5-228642f53875 38fa8b8f-1a31-4331-9acc-15e845c9a9b8 . ADCY3-94 NM_004036 exon13 c.T2174G p.L725R CAGCTGAGCTGGA . 142 82 92 1 . 0 0 0 0 0