Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TAS1R2	80834	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19181215	19181215	+	Missense_Mutation	SNP	G	G	A	rs79635934		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TAS1R2-93	NM_152232	exon3	c.C749T	p.T250M	TCTGACGTCATGT	.	50	9	61	1	G|0.999;A|0.000	0	0	0	0	0
VCAM1	7412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	101198018	101198018	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	VCAM1-90	NM_001078	exon7	c.C1570G	p.L524V	TCCATCCTGGAGG	.	27	9	63	0	.	441	210	231	0	0
GON4L	54856	ucsc.edu	37	1	155726782	155726782	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	GON4L-93	NM_001037533	exon27	c.G5484A	p.R1828R	TTTTTTCCTCTTG	.	206	3	107	0	.	10	9	1	0	0
TTC24	164118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156552861	156552861	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TTC24-46	NM_001105669	exon4	c.G938C	p.G313A	AGCAGGGCCGGAG	.	183	38	190	0	.	0	0	0	0	0
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158596772	158596772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SPTA1-142	NM_003126	exon41	c.A5690G	p.K1897R	ATCTCTTTGTTCT	.	127	19	97	0	.	0	0	0	0	0
OLFML2B	25903	broad.mit.edu;bcgsc.ca	37	1	161989778	161989778	+	Silent	SNP	C	C	G	rs138821383	alternate_allele	TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	OLFML2B-69	NM_015441	exon2	c.G369C	p.S123S	GAGGGCCGATGGG	.	190	8	148	0	C|0.999;T|0.000	4	4	0	0	0
HHIPL2	79802	broad.mit.edu;bcgsc.ca	37	1	222715413	222715413	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	HHIPL2-69	NM_024746	exon3	c.C1059T	p.F353F	CCCAGTGAATATG	.	207	10	165	0	.	2	2	0	0	0
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237993878	237993878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	RYR2-158	NM_001035	exon103	c.C14704T	p.P4902S	ACAGTGCCACATG	.	212	74	132	0	.	0	0	0	0	0
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	240072456	240072456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CHRM3-95	NM_000740	exon5	c.C1705T	p.R569C	AAGAGGCGCAAGC	.	210	18	161	0	.	0	0	0	0	0
OR2L3	391192	broad.mit.edu	37	1	248224862	248224862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	OR2L3-68	NM_001004687	exon1	c.C879A	p.N293K	GAGGAACAAGGAG	.	178	5	109	0	.	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	16955917	16955917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CUBN-166	NM_001081	exon48	c.C7426T	p.R2476W	AGATCCGGCCATG	.	42	14	68	0	.	1	0	1	0	0
COMMD3-BMI1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	22618246	22618246	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	.	NM_001204062	exon14	c.C1185G	p.D395E	AAGTGACTCTGGG	.	65	22	74	0	.	51	38	13	0	0
PIPSL	266971	ucsc.edu	37	10	95718760	95718760	+	RNA	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	.	.	.	.	.	GTCCATGGCTGAG	.	303	1	342	0	.	2	0	2	0	0
PIPSL	266971	ucsc.edu	37	10	95719427	95719427	+	RNA	SNP	T	T	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	.	.	.	.	.	GCCACGTGGATGC	.	224	1	269	0	.	0	0	0	0	0
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101578919	101578919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	ABCC2-91	NM_000392	exon19	c.C2513A	p.T838K	ATGGAACAATTGT	.	105	21	88	0	.	0	0	0	0	0
TRIM8	81603	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104404529	104404529	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TRIM8-227	NM_030912	exon1	c.G155C	p.C52S	TACGCTGCCCAGA	.	122	15	162	2	.	61	58	3	0	0
OR6A2	8590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6816105	6816105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	OR6A2-94	NM_003696	exon1	c.G835T	p.V279F	CAGAGACCAACTT	.	152	18	192	0	.	0	0	0	0	0
IGSF22	283284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	18738381	18738381	+	Silent	SNP	A	A	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	IGSF22-140	NM_173588	exon10	c.T1140C	p.D380D	CAGACCATCTTCG	.	370	109	443	0	.	0	0	0	0	0
OR4S1	256148	broad.mit.edu;bcgsc.ca	37	11	48328626	48328626	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	OR4S1-69	NM_001004725	exon1	c.C852G	p.I284M	TTTGATCTATACA	.	170	8	254	0	.	0	0	0	0	0
OR4D9	390199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	59282746	59282746	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	OR4D9-68	NM_001004711	exon1	c.G361C	p.D121H	GCGTTTGACCGCT	.	72	6	115	0	.	0	0	0	0	0
SLCO2B1	11309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74875111	74875111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SLCO2B1-154	NM_007256	exon3	c.G251T	p.S84I	TCTCCAGCCAGAC	.	99	9	150	0	.	2	1	1	0	0
TENM4	26011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	78413254	78413254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	.	NM_001098816	exon28	c.G4404T	p.E1468D	GGCTGACTCCAGG	.	58	30	102	0	.	0	0	0	0	0
A2M	2	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	9251341	9251341	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	A2M-515	NM_000014	exon15	c.C1713G	p.S571R	GCTGAAGCTCAAA	.	88	15	73	0	.	0	0	0	0	0
ABCD2	225	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	39973352	39973352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	ABCD2-95	NM_005164	exon8	c.G1862A	p.R621H	AACATACGAGCCA	.	72	13	60	0	.	0	0	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49431988	49431988	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	MLL2-612	NM_003482	exon34	c.G9151C	p.A3051P	TATATGCCAGCAG	.	256	59	235	0	.	2	1	1	0	0
SHMT2	6472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57625677	57625677	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SHMT2-91	NM_005412	exon4	c.G493C	p.D165H	GGGCTGGACCTGC	.	75	15	64	0	.	118	85	33	0	0
CYP27B1	1594	bcgsc.ca	37	12	58160674	58160674	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CYP27B1-514	NM_000785	exon1	c.G151C	p.E51Q	AAAGTTCGGCCAG	.	203	9	164	0	.	0	0	0	0	0
TCP11L2	255394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	106717360	106717360	+	Missense_Mutation	SNP	C	C	G	rs138241328	alternate_allele	TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TCP11L2-93	NM_152772	exon6	c.C708G	p.H236Q	ACCGCACCTTCAA	.	153	22	130	0	C|1.000;T|0.000	2	2	0	0	0
FAM222A	84915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	110207030	110207030	+	Silent	SNP	G	G	A	rs138993259		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	.	NM_032829	exon3	c.G1296A	p.T432T	TGAGACGGTGGCC	.	209	18	154	0	G|1.000;A|0.000	0	0	0	0	0
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110234478	110234478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TRPV4-94	NM_021625	exon7	c.C1184T	p.T395M	TCATCCGTCACCT	.	113	18	95	0	.	5	5	0	0	0
EP400	57634	broad.mit.edu	37	12	132522575	132522575	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	EP400-520	NM_015409	exon32	c.G6141A	p.V2047V	GTTTGTGGTGCTT	.	382	8	317	1	.	14	13	1	0	0
RCBTB1	55213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	50134123	50134123	+	Silent	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	RCBTB1-91	NM_018191	exon5	c.C375G	p.L125L	GATCAAGAGATTG	.	217	47	224	0	.	3	2	1	0	0
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	101881861	101881861	+	Silent	SNP	T	T	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	NALCN-167	NM_052867	exon13	c.A1509G	p.G503G	CTTTTTTCCAGGA	.	18	7	51	0	.	0	0	0	0	0
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31582629	31582629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	HECTD1-570	NM_015382	exon33	c.G5918A	p.S1973N	TCACTACTTTGAA	.	52	10	53	0	.	12	4	8	0	0
HEATR5A	25938	broad.mit.edu;bcgsc.ca	37	14	31763220	31763220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	HEATR5A-23	NM_015473	exon35	c.T5710C	p.C1904R	TGATACAGGATGC	.	101	5	186	0	.	2	1	1	0	0
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64519117	64519117	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SYNE2-164	NM_182914	exon48	c.T8486G	p.L2829X	AGCAATTAGAATT	.	45	6	50	0	.	0	0	0	0	0
CKB	1152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	103988811	103988811	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CKB-115	NM_001823	exon2	c.A20C	p.H7P	GCGTTGTGGCTGT	.	22	9	46	0	.	29	0	29	0	0
SOLH	6650	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	598994	598994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SOLH-523	NM_005632	exon5	c.A1451G	p.N484S	TGCAGAACAATGT	.	65	4	85	0	.	2	2	0	0	0
RRN3	54700	broad.mit.edu	37	16	15168670	15168670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	RRN3-91	NM_018427	exon11	c.C907A	p.L303I	GGTCGAGCCGTTC	.	103	6	78	2	.	33	30	3	0	0
TMEM219	124446	broad.mit.edu	37	16	29982731	29982731	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TMEM219-90	NM_001083613	exon5	c.G588A	p.E196E	CTAGGAGGAGCTG	.	160	4	155	0	.	1	1	0	0	0
DNAH2	146754	broad.mit.edu;bcgsc.ca	37	17	7689597	7689597	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	DNAH2-102	NM_020877	exon39	c.C6285T	p.R2095R	ATGGCGCATTCTA	.	87	6	83	0	.	0	0	0	0	0
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	10300168	10300168	+	Silent	SNP	A	A	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	MYH8-101	NM_002472	exon31	c.T4314A	p.S1438S	TGCATTAGACCTT	.	230	19	177	0	.	0	0	0	0	0
TMEM132E	124842	broad.mit.edu;bcgsc.ca	37	17	32956104	32956104	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TMEM132E-68	NM_207313	exon5	c.C949G	p.R317G	GTCAAGCGGAGGA	.	304	10	298	0	.	2	2	0	0	0
CLTC	1213	broad.mit.edu;bcgsc.ca	37	17	57728648	57728648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CLTC-835	NM_004859	exon5	c.G766T	p.A256S	CCAGAAGCACAAA	.	195	8	148	0	.	25	24	1	0	0
BPTF	2186	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	65960510	65960510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	BPTF-94	NM_182641	exon25	c.G8444T	p.R2815L	TGCTCCGTTCCTT	.	153	14	106	0	.	1	1	0	0	0
CBX4	8535	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	77807886	77807886	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CBX4-228	NM_003655	exon5	c.C1555G	p.P519A	CGGCTGGAGGCTT	.	77	7	80	0	.	10	8	2	0	0
AZI1	22994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79165083	79165083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	AZI1-136	NM_014984	exon22	c.G2675T	p.G892V	TCCCGGCCTTTCC	.	169	32	138	0	.	35	33	2	0	0
SERPINB3	6317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61322975	61322975	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SERPINB3-228	NM_006919	exon8	c.C1089G	p.F363L	ACAATGGAACTCT	.	186	72	281	2	.	0	0	0	0	0
PGLYRP2	114770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15587343	15587343	+	Silent	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PGLYRP2-93	NM_052890	exon2	c.C138A	p.T46T	GTGTCTGGTCTTG	.	123	19	131	0	.	0	0	0	0	0
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35512474	35512474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	GRAMD1A-90	NM_020895	exon14	c.C1544T	p.S515L	AGAACTCGTGGAG	.	95	24	86	0	.	102	74	27	0	1
ZNF585B	92285	broad.mit.edu;bcgsc.ca	37	19	37680577	37680577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	ZNF585B-91	NM_152279	exon4	c.G278A	p.R93H	CTGTGACGTGGCC	.	186	8	270	0	.	0	0	0	0	0
RAD51AP2	729475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	17699184	17699184	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	RAD51AP2-23	NM_001099218	exon1	c.A499C	p.I167L	CATGTATATCGTG	.	125	27	72	0	.	0	0	0	0	0
DNMT3A	1788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25458669	25458669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	DNMT3A-1924	NM_175629	exon22	c.C2504T	p.T835M	GACCTCGTAGTAA	.	271	88	146	1	.	46	27	19	0	0
C2orf70	339778	broad.mit.edu	37	2	26785532	26785532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	C2orf70-69	NM_001105519	exon1	c.G52T	p.V18L	GCCTACGTGCCCC	.	165	6	144	1	.	13	13	0	0	0
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37430124	37430124	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CEBPZ-91	NM_005760	exon14	c.A2912T	p.N971I	GAATCATTTAAGT	.	216	75	150	0	.	122	64	58	0	0
PREPL	9581	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	44566372	44566372	+	Nonsense_Mutation	SNP	G	G	A	rs145356495		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PREPL-91	NM_001171603	exon7	c.C883T	p.R295X	GTATTCGCTTCTG	.	182	14	161	0	G|1.000;A|0.000	21	21	0	0	0
PREPL	9581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44566451	44566451	+	Silent	SNP	A	A	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PREPL-91	NM_001171603	exon7	c.T804C	p.N268N	CATAATATTTATG	.	142	16	143	0	.	13	13	0	0	0
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55561724	55561724	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CCDC88A-94	NM_018084	exon15	c.A2233C	p.K745Q	ATGCTTTCAGGAG	.	74	14	36	0	.	2	2	0	0	0
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	149247732	149247732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	MBD5-95	NM_018328	exon12	c.G3832A	p.E1278K	TTTAAGGAGAGAC	.	64	6	73	0	.	7	6	1	0	0
CCDC173	129881	hgsc.bcm.edu;bcgsc.ca	37	2	170506849	170506849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	.	NM_001085447	exon7	c.G1142A	p.R381Q	ATGGCTCGATATT	.	64	4	51	0	.	0	0	0	0	0
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179469564	179469564	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TTN-636	NM_001267550	exon281	c.G54252C	p.L18084F	CCATGTCAAGTAG	.	237	42	236	1	.	0	0	0	0	0
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198265617	198265617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SF3B1-140	NM_012433	exon18	c.C2540T	p.A847V	ATTTCTGCTGCAC	.	78	11	91	0	.	140	109	31	0	0
PLEKHM3	389072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	208725904	208725904	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PLEKHM3-23	NM_001080475	exon7	c.G2033C	p.S678T	TTCTGGCTACAAA	.	133	7	119	0	.	0	0	0	0	0
DGKD	8527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	234368474	234368474	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	DGKD-676	NM_152879	exon23	c.C2766T	p.V922V	CTGGGTCCAGCCG	.	134	8	131	0	.	1	0	1	0	0
AHCY	191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	32873337	32873337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	AHCY-91	NM_000687	exon9	c.G1076A	p.S359N	GAGTTACTCATCA	.	140	27	103	0	.	182	163	19	0	0
SRSF6	6431	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42089596	42089596	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SRSF6-289	NM_006275	exon6	c.T928G	p.S310A	CCACCCTCAAAGG	.	97	14	90	1	.	541	442	98	0	0
ZBP1	81030	broad.mit.edu;bcgsc.ca	37	20	56195329	56195329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	ZBP1-228	NM_001160419	exon1	c.C23T	p.P8L	CTGCCCGGGTCAG	.	240	8	182	0	.	0	0	0	0	0
SMTN	6525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	31484747	31484747	+	Silent	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SMTN-154	NM_001207018	exon4	c.G525C	p.R175R	TGTACGGGCTCAG	.	94	26	141	0	.	7	4	3	0	0
RAC2	5880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37627391	37627391	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	RAC2-723	NM_002872	exon5	c.A328T	p.I110F	GGATGATGGGTGT	.	225	83	273	0	.	34	13	21	0	0
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	10089633	10089633	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	FANCD2-229	NM_001018115	exon16	c.G1311A	p.S437S	TCTGTCGCTGGCT	.	107	8	137	0	.	1	1	0	0	0
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38962716	38962716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SCN11A-99	NM_014139	exon6	c.G743A	p.R248H	ACAGAGCGTAGCA	.	138	106	149	1	.	0	0	0	0	0
ZBTB38	253461	broad.mit.edu	37	3	141162716	141162716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	ZBTB38-25	NM_001080412	exon8	c.G1486A	p.V496I	AACAAAGTATTTG	.	94	3	115	1	.	4	4	0	0	0
AADACL2	344752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	151475280	151475280	+	Silent	SNP	T	T	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	AADACL2-90	NM_207365	exon5	c.T1104C	p.D368D	TGAGGATGGAATT	.	191	15	137	0	.	0	0	0	0	0
SI	6476	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	164767590	164767590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SI-104	NM_001041	exon14	c.C1586T	p.P529L	GTAAACGGTGGAT	.	131	9	95	0	.	0	0	0	0	0
KLB	152831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39439409	39439409	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	KLB-69	NM_175737	exon3	c.G1399C	p.E467Q	GGCTTTGAATGGC	.	112	15	178	0	.	0	0	0	0	0
FIP1L1	81608	broad.mit.edu	37	4	54244014	54244014	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	FIP1L1-1083	NM_030917	exon1	c.C9T	p.A3A	GTCGGCCGGCGAG	.	22	9	44	1	.	7	3	4	0	0
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57889646	57889646	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	POLR2B-92	NM_000938	exon19	c.A2666T	p.K889M	ATACCAAGAGAGA	.	92	7	167	0	.	30	28	2	0	0
SMARCAD1	56916	broad.mit.edu	37	4	95174021	95174021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SMARCAD1-229	NM_001128429	exon9	c.G1144A	p.E382K	GTGATGGAGGATG	.	61	4	129	0	.	4	4	0	0	0
GUCY1B3	2983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	156724870	156724870	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	.	NM_000857	exon11	c.T1508G	p.M503R	TGGACATGATGGA	.	39	4	82	0	.	21	16	5	0	0
SDHA	6389	ucsc.edu;bcgsc.ca	37	5	235358	235358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SDHA-226	NM_004168	exon9	c.G1164A	p.M388I	AGCCATGATCTTC	.	569	92	444	4	.	89	78	11	0	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	13771076	13771076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	DNAH5-182	NM_001369	exon56	c.C9387A	p.F3129L	AGTGAGGAAGTGT	.	104	7	70	0	.	0	0	0	0	0
NNT	23530	broad.mit.edu	37	5	43677873	43677873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	NNT-92	NM_182977	exon19	c.G2841T	p.L947F	TGATTTGGTAAAG	.	110	4	114	0	.	31	31	0	0	0
DDX4	54514	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	55110902	55110902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	DDX4-227	NM_024415	exon20	c.G1889A	p.R630H	TTGGGCGTACTGG	.	287	16	244	0	.	0	0	0	0	0
RASA1	5921	bcgsc.ca	37	5	86645138	86645138	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	RASA1-661	NM_002890	exon8	c.A1210T	p.T404S	TGTCCAACGCCAA	.	89	32	103	2	.	7	4	3	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101811427	101811427	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SLCO6A1-96	NM_173488	exon4	c.C873T	p.V291V	CTCAGGGACTTTA	.	84	4	69	0	.	0	0	0	0	0
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140711698	140711698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PCDHGA1-137	NM_018912	exon1	c.G1447A	p.E483K	AGCAATGAGAATG	.	75	15	74	0	.	0	0	0	0	0
CLINT1	9685	broad.mit.edu	37	5	157285975	157285975	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CLINT1-48	NM_014666	exon1	c.T4A	p.L2M	TGTTCAACATCGT	.	87	3	133	0	.	27	25	2	0	0
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180050943	180050943	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	FLT4-1490	NM_182925	exon11	c.A1540T	p.K514X	TATTCTTTCCCTC	.	197	21	203	0	.	0	0	0	0	0
HIST1H2AE	3012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26217223	26217223	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	HIST1H2AE-92	NM_021052	exon1	c.A21T	p.Q7H	AAAGCAAGGCGGC	.	131	68	193	0	.	4	3	1	0	0
PKHD1	5314	broad.mit.edu;bcgsc.ca	37	6	51889790	51889790	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PKHD1-603	NM_170724	exon32	c.C4818T	p.V1606V	AATATAGACTGAC	.	209	9	209	0	.	0	0	0	0	0
KIAA1009	22832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84911470	84911470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	KIAA1009-91	NM_014895	exon8	c.G703A	p.G235S	GCATGCCAGTTTT	.	90	46	82	1	.	6	4	2	0	0
PM20D2	135293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	89859124	89859124	+	Silent	SNP	T	T	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PM20D2-68	NM_001010853	exon2	c.T606A	p.A202A	TATGGCTGAACAT	.	79	6	98	0	.	0	0	0	0	0
HDDC2	51020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	125619919	125619919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	HDDC2-90	NM_016063	exon3	c.G250A	p.V84I	CCCCAACGATGCA	.	185	85	179	0	.	51	44	7	0	0
SNX10	29887	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	26404687	26404687	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SNX10-226	NM_001199835	exon5	c.C233G	p.S78C	TTCCATCTAAAAA	.	109	6	81	0	.	34	33	1	0	0
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31609394	31609394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	.	NM_001257968	exon5	c.G357T	p.M119I	AGGGATGGTTCAA	.	147	24	140	0	.	0	0	0	0	0
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117267708	117267708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CFTR-518	NM_000492	exon22	c.G3601T	p.D1201Y	AAGAAAGATGACA	.	103	24	91	0	.	0	0	0	0	0
RNF133	168433	broad.mit.edu	37	7	122338189	122338189	+	Missense_Mutation	SNP	G	G	A	rs137950690		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	RNF133-227	NM_139175	exon1	c.C784T	p.R262C	TATAGCGTTCAAA	.	191	7	169	0	G|1.000;A|0.000	0	0	0	0	0
CCNE2	9134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	95906316	95906316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CCNE2-414	NM_057749	exon3	c.C46T	p.P16S	GGCTGGGCTGGGG	.	89	19	71	0	.	2	2	0	0	0
PARP10	84875	broad.mit.edu;bcgsc.ca	37	8	145059064	145059064	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PARP10-526	NM_032789	exon5	c.G1106C	p.G369A	TGCAACCCCACAG	.	102	20	70	1	.	39	29	10	0	0
ALAD	210	broad.mit.edu;bcgsc.ca	37	9	116153879	116153879	+	Silent	SNP	C	C	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	ALAD-90	NM_000031	exon4	c.G189A	p.E63E	CAGCATCTCTTCC	.	116	5	189	0	.	4	4	0	0	0
PHF19	26147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	123620475	123620475	+	Missense_Mutation	SNP	C	C	T	rs144405933		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PHF19-136	NM_015651	exon15	c.G1490A	p.R497H	GGGCAGCGTCCAT	.	45	21	80	0	C|1.000;T|0.000	5	1	4	0	0
SEPT6	23157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118797595	118797595	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SEPT6-969	NM_145802	exon3	c.A191T	p.N64I	TTGGTGTTGAACA	.	87	9	147	0	.	4	2	2	0	0
FATE1	89885	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	150889896	150889896	+	Silent	SNP	G	G	A	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	FATE1-131	NM_033085	exon3	c.G264A	p.L88L	AATGCTGAGAGAA	.	270	39	391	1	.	0	0	0	0	0
DPYS	1807	broad.mit.edu	37	8	105478888	105478888	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	DPYS-229	NM_001385	exon1	c.261delC	p.T87fs	TACCTTGGTGCCC	.	6	2	4	0	.	0	0	0	0	0
IFT74	80173	hgsc.bcm.edu;bcgsc.ca	37	9	26962063	26962075	+	Frame_Shift_Del	DEL	GAAATATTCGAGT	GAAATATTCGAGT	-	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	GAAATATTCGAGT	GAAATATTCGAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	IFT74-515	NM_001099222	exon2	c.98_110del	p.33_37del	.	.	27	10	84	0	.	0	0	0	0	0
CLCC1	23155	broad.mit.edu	37	1	109477463	109477464	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CLCC1-91	NM_001048210	exon11	c.1485_1486insA	p.K495fs	GACAGGCTTGGCC	.	212	11	311	0	.	0	0	0	0	0