Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TMEM125	128218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	43739036	43739036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	TMEM125-153	NM_144626	exon4	c.A643G	p.I215V	TCCAGCATTGCCA	.	150	80	205	0	.	23	15	8	0	0
C1orf185	284546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	51578193	51578193	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_001136508	exon2	c.G74C	p.G25A	GAATTGGTTTCTT	.	32	16	26	0	.	0	0	0	0	0
RPTN	126638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152127305	152127305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	RPTN-68	NM_001122965	exon3	c.G2270A	p.R757Q	CTGTCTCGTCTCT	.	399	158	367	1	.	0	0	0	0	0
NUP210L	91181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154108401	154108401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	NUP210L-77	NM_001159484	exon7	c.A898G	p.R300G	CAACTCTATGGTC	.	94	29	90	0	.	0	0	0	0	0
TMEM9	252839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201123024	201123024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	TMEM9-90	NM_016456	exon2	c.G28A	p.V10I	ACCCGACCACAGC	.	251	89	275	0	.	21	12	9	0	0
IDI2	91734	broad.mit.edu	37	10	1066741	1066741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IDI2-90	NM_033261	exon4	c.G332A	p.R111H	TGCAGACGCCTCT	.	90	4	92	0	.	0	0	0	0	0
MYPN	84665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	69959137	69959137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MYPN-95	NM_032578	exon17	c.C3298T	p.P1100S	GGTTTACCGCCCC	.	129	47	124	0	.	0	0	0	0	0
TRIM8	81603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104416093	104416093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	TRIM8-227	NM_030912	exon5	c.C999A	p.F333L	GCTCTTCCTGAAC	.	200	86	170	0	.	55	24	31	0	0
MUC2	4583	broad.mit.edu;bcgsc.ca	37	11	1093344	1093344	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MUC2-90	NM_002457	exon30	c.G5163T	p.P1721P	AACCCCGACACCC	.	182	11	159	1	.	0	0	0	0	0
GPR83	10888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	94113422	94113422	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	GPR83-92	NM_016540	exon4	c.A1165T	p.N389Y	CATCATTCTTCTC	.	175	76	152	0	.	0	0	0	0	0
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	94340737	94340737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	PIWIL4-91	NM_152431	exon14	c.A1771G	p.I591V	ATGAGTATCGCCA	.	95	37	74	0	.	0	0	0	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128936739	128936739	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ARHGAP32-231	NM_001142685	exon6	c.A514T	p.S172C	CATAACTTCTTTT	.	25	13	24	1	.	2	2	0	0	0
XPOT	11260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64827226	64827226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	XPOT-652	NM_007235	exon19	c.C2295A	p.F765L	GATGTTCATGCCC	.	126	74	122	0	.	17	3	14	0	0
UHRF1BP1L	23074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	100453199	100453199	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	UHRF1BP1L-24	NM_015054	exon14	c.G1856C	p.R619P	GAATGTCGACAGT	.	103	22	83	0	.	2	0	2	0	0
SCYL2	55681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	100707272	100707272	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SCYL2-336	NM_017988	exon7	c.A925T	p.N309Y	CTGTTAAATGTAA	.	102	27	54	0	.	11	8	3	0	0
IFT81	28981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110565896	110565896	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IFT81-91	NM_014055	exon3	c.C190T	p.R64X	GCCAAACGAATGT	.	119	36	71	0	.	7	7	0	0	0
OLFM4	10562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	53624827	53624827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	OLFM4-69	NM_006418	exon5	c.C1454A	p.P485H	ATAACCCTTTTGA	.	72	43	63	0	.	0	0	0	0	0
C14orf105	55195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	57960296	57960296	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	C14orf105-90	NM_018168	exon1	c.A138T	p.S46S	TGCCAGTGAATAT	.	75	35	67	0	.	14	5	9	0	0
PAPLN	89932	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	73712877	73712877	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	PAPLN-70	NM_173462	exon5	c.T328G	p.Y110D	CCCTACTACAGCG	.	60	20	28	0	.	0	0	0	0	0
TDP1	55775	bcgsc.ca	37	14	90459808	90459808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	TDP1-92	NM_018319	exon14	c.G1522T	p.A508S	AAAATTGCTTGGT	.	106	6	82	0	.	5	5	0	0	0
SERPINA6	866	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94780584	94780584	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SERPINA6-653	NM_001756	exon2	c.T402A	p.D134E	GCTGCCATCAAGA	.	89	34	106	1	.	4	3	1	0	0
NUSAP1	51203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41669495	41669495	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_016359	exon10	c.C1225T	p.Q409X	CATCTCCAGACAA	.	56	20	40	0	.	0	0	0	0	0
SHF	90525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	45491143	45491143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SHF-69	NM_138356	exon2	c.C130A	p.H44N	AGGAATGGGGCTG	.	137	68	123	0	.	0	0	0	0	0
C15orf39	56905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75499667	75499667	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	C15orf39-90	NM_015492	exon2	c.C1278T	p.C426C	GCCCTGCTCAGAG	.	150	64	119	0	.	8	4	4	0	0
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3901001	3901001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	CREBBP-1807	NM_001079846	exon2	c.C95T	p.S32L	AACAATGATCCAA	.	78	22	49	0	.	0	0	0	0	0
UBN1	29855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	4908004	4908004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	UBN1-92	NM_001079514	exon3	c.C263T	p.S88L	ATCTGTCAGATCC	.	32	9	12	0	.	1	1	0	0	0
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21051260	21051260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	DNAH3-167	NM_017539	exon33	c.G4644T	p.L1548F	CCGGAACAAGGCC	.	236	59	177	0	.	0	0	0	0	0
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84094306	84094306	+	Silent	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MBTPS1-92	NM_003791	exon20	c.C2685G	p.V895V	TGGAGTGACTGAG	.	126	55	110	0	.	42	17	25	0	0
ZCCHC14	23174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	87445209	87445209	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ZCCHC14-154	NM_015144	exon12	c.A2707T	p.S903C	TCCCGCTCTTTTT	.	165	56	136	0	.	10	7	3	0	0
FXR2	9513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7497319	7497319	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_004860	exon11	c.A1024C	p.M342L	GAACCATTCCCTA	.	63	18	46	0	.	2	0	2	0	0
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10366950	10366950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MYH4-102	NM_017533	exon8	c.A659C	p.E220A	TGATCTTCAAGGG	.	72	55	58	0	.	0	0	0	0	0
STAC2	342667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37373422	37373422	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	STAC2-91	NM_198993	exon3	c.C402T	p.N134N	TTTGGAGTTTCCT	.	115	60	83	0	.	0	0	0	0	0
LLGL2	3993	broad.mit.edu	37	17	73565071	73565071	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	LLGL2-251	NM_004524	exon13	c.C1335A	p.G445G	GGACGGCACGGTG	.	36	5	13	0	.	0	0	0	0	0
NEDD4L	23327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	56033337	56033337	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	NEDD4L-658	NM_001144967	exon21	c.G1940C	p.R647T	AAGCTAGACTGTG	.	132	9	93	0	.	9	9	0	0	0
LPPR3	0	hgsc.bcm.edu	37	19	815207	815207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_001270366	exon4	c.C382T	p.R128W	TACGCCGCAGGAA	.	4	4	0	0	.	0	0	0	0	0
STK11	6794	ucsc.edu	37	19	1220643	1220643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	STK11-5227	NM_000455	exon5	c.C661T	p.P221S	TTCCAGCCGCCCG	.	24	4	18	0	.	32	32	0	0	0
ZNF57	126295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2915555	2915555	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ZNF57-71	NM_173480	exon2	c.C39T	p.F13F	GGACTTCACCCTG	.	170	76	174	0	.	0	0	0	0	0
C19orf71	100128569	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3543941	3543941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_001135580	exon4	c.T563C	p.V188A	AGTGGGTCCTGGA	.	344	120	245	2	.	5	5	0	0	0
C19orf71	100128569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3543943	3543943	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_001135580	exon4	c.C565T	p.L189L	TGGGTCCTGGAAC	.	348	126	253	0	.	5	5	0	0	0
ZFR2	23217	hgsc.bcm.edu;broad.mit.edu	37	19	3808936	3808936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ZFR2-70	NM_015174	exon17	c.C2479T	p.P827S	CCAGGGGCCCAGC	.	33	15	16	0	.	0	0	0	0	0
C19orf80	55908	broad.mit.edu;bcgsc.ca	37	19	11350388	11350388	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_018687	exon1	c.C75T	p.G25G	CATGGGCGGCCCA	.	104	46	48	1	.	0	0	0	0	0
IL27RA	9466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14150421	14150421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IL27RA-90	NM_004843	exon3	c.G320A	p.G107D	TCTGGGGCACTAA	.	190	61	170	0	.	6	4	2	0	0
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	17322846	17322846	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MYO9B-67	NM_004145	exon40	c.G6201A	p.T2067T	GCCCACGGCCAAC	.	59	36	32	0	.	3	2	1	0	0
MAP3K10	4294	hgsc.bcm.edu	37	19	40698281	40698281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MAP3K10-981	NM_002446	exon1	c.G343T	p.A115S	TATCGGGCCCTGT	.	28	4	9	0	.	6	6	0	0	0
CYP2A6	1548	ucsc.edu;bcgsc.ca	37	19	41349763	41349763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	CYP2A6-92	NM_000762	exon9	c.C1423A	p.P475T	GTTTGGGGGACAC	.	1723	501	1557	5	.	0	0	0	0	0
ZNF221	7638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44471195	44471195	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ZNF221-91	NM_013359	exon6	c.G1541C	p.R514T	GAAAGAGATTTAC	.	51	15	51	0	.	0	0	0	0	0
GPN1	11321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27858007	27858007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	GPN1-159	NM_007266	exon7	c.G472A	p.A158T	CTTTAGGCATCCT	.	189	73	209	0	.	1	0	1	0	0
RTN4	57142	bcgsc.ca	37	2	55254453	55254453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	RTN4-155	NM_020532	exon3	c.C782A	p.T261N	CCTTCAGTGGGTA	.	62	4	49	0	.	0	0	0	0	0
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	73836707	73836707	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ALMS1-142	NM_015120	exon23	c.C12472T	p.Q4158X	ACCAATCAACTTC	.	53	15	54	0	.	0	0	0	0	0
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	148676153	148676153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ACVR2A-831	NM_001616	exon7	c.A954G	p.I318M	TGCCATATCTCAC	.	56	22	28	0	.	0	0	0	0	0
SH3BP4	23677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	235949726	235949726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SH3BP4-94	NM_014521	exon4	c.C313G	p.P105A	TACATCCCCTCCT	.	320	127	321	0	.	5	2	3	0	0
SEPT5	5413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19709430	19709430	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SEPT5-636	NM_001009939	exon9	c.C916T	p.R306X	GACGTGCGACGTG	.	119	43	67	0	.	12	6	6	0	0
MTMR3	8897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30416249	30416249	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MTMR3-292	NM_153050	exon17	c.C2601T	p.C867C	ATCTTGCCTTGTA	.	145	60	139	0	.	11	10	1	0	0
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	4859771	4859771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ITPR1-710	NM_001168272	exon59	c.G7828A	p.E2610K	GGCTTGGAAAGAG	.	126	45	101	0	.	2	2	0	0	0
THUMPD3	25917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9406849	9406849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	THUMPD3-227	NM_001114092	exon2	c.G97A	p.E33K	GGAAGTGAATCTG	.	128	51	133	0	.	0	0	0	0	0
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	151155196	151155196	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IGSF10-102	NM_178822	exon6	c.A7153C	p.S2385R	GATAACTTTGTGG	.	77	41	79	0	.	0	0	0	0	0
UGT2B28	54490	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	70146322	70146322	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	UGT2B28-91	NM_053039	exon1	c.A104T	p.H35L	ACAGCCATTGGAT	.	170	74	169	0	.	0	0	0	0	0
NPFFR2	10886	bcgsc.ca	37	4	73012838	73012838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	NPFFR2-92	NM_004885	exon4	c.G878A	p.R293Q	ATTACCGAGTGAG	.	89	5	83	0	.	0	0	0	0	0
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	111397929	111397929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ENPEP-157	NM_001977	exon1	c.G359A	p.S120N	CCGTGAGCATCTC	.	143	38	132	0	.	2	0	2	0	0
CCT5	22948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	10263419	10263419	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	CCT5-92	NM_012073	exon10	c.G1491A	p.G497G	CAAGGGGACAAAT	.	111	50	97	0	.	2	1	1	0	0
ZNF366	167465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	71739709	71739709	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ZNF366-91	NM_152625	exon5	c.G2109A	p.R703R	AAAAGCCCTGAGA	.	42	13	36	0	.	0	0	0	0	0
SLC12A2	6558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127477532	127477532	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SLC12A2-94	NM_001046	exon10	c.T1632A	p.V544V	TTGTGTTGTTCGA	.	74	25	100	0	.	0	0	0	0	0
SLC26A2	1836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149361289	149361289	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SLC26A2-90	NM_000112	exon3	c.T2133C	p.S711S	CTATAGTGTGTAT	.	41	17	42	0	.	2	2	0	0	0
DNPH1	10591	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	43193768	43193768	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_199184	exon3	c.G379T	p.E127X	GGTGCTCACCGCG	.	72	25	76	0	.	9	2	7	0	0
HCRTR2	3062	ucsc.edu;bcgsc.ca	37	6	55113587	55113587	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	HCRTR2-525	NM_001526	exon2	c.C374G	p.S125C	GACAGTCCCTTTG	.	181	73	176	2	.	0	0	0	0	0
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	160467594	160467594	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IGF2R-118	NM_000876	exon15	c.G1968C	p.K656N	AAAGAAGTATGAC	.	32	9	22	0	.	7	3	4	0	0
ISPD	729920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	16255771	16255771	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ISPD-23	NM_001101426	exon9	c.C1171G	p.L391V	GCATTAGGTTTTC	.	50	28	23	0	.	1	0	1	0	0
HIP1	3092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75183809	75183809	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	HIP1-1085	NM_005338	exon20	c.G1980A	p.T660T	TGTGACCGTGGAG	.	105	63	105	0	.	7	2	5	0	0
CD36	948	broad.mit.edu;bcgsc.ca	37	7	80302113	80302113	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	CD36-69	NM_001127444	exon10	c.A1153T	p.K385X	TTTGCAAAACGGC	.	166	108	81	2	.	1	1	0	0	0
HIPK2	28996	ucsc.edu;bcgsc.ca	37	7	139305166	139305166	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	HIPK2-785	NM_022740	exon7	c.T1763A	p.L588Q	GTGGTCAGCTGGT	.	663	290	348	3	.	8	5	3	0	0
PAXIP1	22976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	154767474	154767474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	PAXIP1-228	NM_007349	exon6	c.C1006T	p.R336W	GTGTCCGTACAGC	.	202	86	101	0	.	2	0	2	0	0
SGK223	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	8235300	8235300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_001080826	exon2	c.T619C	p.F207L	GGCGGAAGCTCTC	.	94	43	111	0	.	4	3	1	0	0
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	52359698	52359698	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	PXDNL-70	NM_144651	exon12	c.A1391T	p.Q464L	GTATGCTGGCCTT	.	108	44	100	0	.	0	0	0	0	0
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	53555097	53555097	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	RB1CC1-170	NM_001083617	exon18	c.A4151C	p.K1384T	TCAAGCTTTTTCT	.	93	39	85	0	.	6	2	4	0	0
UTP23	84294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	117782585	117782585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	UTP23-226	NM_032334	exon2	c.C343T	p.H115Y	CCTCATCATTATT	.	87	30	58	0	.	8	4	4	0	0
TONSL	4796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145668588	145668588	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	TONSL-92	NM_013432	exon4	c.G381C	p.R127S	AGCATCCCTCGAC	.	160	50	169	0	.	1	0	1	0	0
FAM22F	54754	bcgsc.ca	37	9	97082579	97082579	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	FAM22F-68	NM_017561	exon5	c.C1279T	p.Q427X	GCGGCTGCTCCAC	.	314	105	295	2	.	0	0	0	0	0
CCDC180	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	100128909	100128909	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_020893	exon31	c.C4248T	p.C1416C	CCAGTGCGCCGAG	.	336	119	300	2	.	6	5	1	0	0
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	24750526	24750526	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	POLA1-229	NM_016937	exon16	c.T1708A	p.L570M	TTTGCATTGGATA	.	26	23	43	0	.	3	0	3	0	0
GATA1	2623	hgsc.bcm.edu	37	X	48652221	48652221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	GATA1-1315	NM_002049	exon6	c.C892T	p.R298W	ACCATGCGGAAGG	.	75	4	73	0	.	0	0	0	0	0
FAM155B	27112	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	68748896	68748896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	FAM155B-131	NM_015686	exon2	c.C922T	p.R308C	TGCCAGCGCTGGG	.	96	84	103	1	.	0	0	0	0	0
TBC1D8B	54885	broad.mit.edu	37	X	106109170	106109170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	TBC1D8B-133	NM_017752	exon16	c.G2569A	p.A857T	CATTCTGCAAATA	.	45	3	53	0	.	0	0	0	0	0
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27106015	27106015	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ARID1A-584	NM_006015	exon20	c.5626delC	p.P1876fs	.	.	122	49	118	0	.	0	0	0	0	0
FAM21C	253725	broad.mit.edu	37	10	46282636	46282644	+	In_Frame_Del	DEL	GAGGCCGGT	GAGGCCGGT	-	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	GAGGCCGGT	GAGGCCGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	FAM21C-91	NM_015262	exon27	c.2965_2973del	p.989_991del	AGTGGGGAGGCCG	.	516	27	620	0	.	0	0	0	0	0
WNK1	65125	broad.mit.edu	37	12	970297	970297	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	WNK1-916	NM_001184985	exon7	c.1739delA	p.E580fs	AGCAAGAAAAAAA	.	96	9	60	0	.	0	0	0	0	0
COL7A1	1294	hgsc.bcm.edu;bcgsc.ca	37	3	48610131	48610131	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	COL7A1-160	NM_000094	exon87	c.6873delA	p.E2291fs	.	.	114	31	136	0	.	0	0	0	0	0
IL17RD	54756	hgsc.bcm.edu;bcgsc.ca	37	3	57144293	57144293	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IL17RD-500	NM_017563	exon4	c.357delG	p.K119fs	.	.	90	27	123	0	.	0	0	0	0	0
WDR16	146845	broad.mit.edu	37	17	9503401	9503402	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	WDR16-71	NM_145054	exon6	c.654_655insT	p.S218fs	TGATAGCTTTTTC	.	168	7	147	0	.	0	0	0	0	0
USF2	7392	bcgsc.ca	37	19	35761401	35761402	+	In_Frame_Ins	INS	-	-	TCAGCGGGGAGGCACGATTTGCCT	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	USF2-514	NM_003367	exon5	c.481_482insTCAGCGGGGAGGCACGATTTGCCT	p.V161delinsVSGEARFAF	GAGGCTGTCAGCG	.	209	10	288	0	.	0	0	0	0	0