Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
AGRN	375790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	957703	957703	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	AGRN-136	NM_198576	exon2	c.C324A	p.S108S	GGTGTCCACTGGG	.	216	38	160	0	.	21	9	12	0	0
OTUD3	23252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	20233031	20233031	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	.	NM_015207	exon7	c.T942C	p.N314N	CTTAAATGAAGGC	.	138	23	136	0	.	2	2	0	0	0
KANK4	163782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62739262	62739262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	KANK4-74	NM_181712	exon3	c.G1514A	p.G505D	TCAGTGCCTGCTT	.	133	18	96	0	.	0	0	0	0	0
SYDE2	84144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	85648463	85648463	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SYDE2-70	NM_032184	exon3	c.T1862A	p.L621H	TCACTAAGGTAAC	.	84	13	85	0	.	0	0	0	0	0
NTRK1	4914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156851384	156851384	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	NTRK1-1393	NM_002529	exon17	c.C2341T	p.L781L	GCCCGGCTGCAAG	.	19	4	18	0	.	0	0	0	0	0
HSPA6	3310	broad.mit.edu	37	1	161495204	161495204	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	HSPA6-226	NM_002155	exon1	c.G756A	p.G252G	GCATGGGAAGGAC	.	176	16	139	0	.	6	6	0	0	0
CUBN	8029	broad.mit.edu	37	10	16941145	16941145	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CUBN-166	NM_001081	exon54	c.C8448G	p.I2816M	GGATCTGATTGTA	.	100	4	92	0	.	9	9	0	0	0
MIR938	100126327	ucsc.edu;bcgsc.ca	37	10	29891267	29891267	+	RNA	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	.	.	.	.	.	ACATGGTACACCT	.	79	26	83	0	.	0	0	0	0	0
NUDT13	25961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74879794	74879794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	NUDT13-90	NM_015901	exon3	c.G102T	p.K34N	ACTGAAGGAAGAT	.	43	15	51	0	.	1	0	1	0	0
PIPSL	266971	broad.mit.edu	37	10	95719352	95719352	+	RNA	SNP	G	G	A	rs181589087		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	.	.	.	.	.	TCCACCGGGTTTC	.	212	5	203	1	G|0.999;A|0.001	0	0	0	0	0
LZTS2	84445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	102763858	102763858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	LZTS2-155	NM_032429	exon3	c.G1003C	p.D335H	CTCCGAGACCGGG	.	156	33	122	0	.	32	25	7	0	0
TIAL1	7073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	121338280	121338280	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TIAL1-91	NM_001033925	exon7	c.T565G	p.W189G	TGGCCCAATTGGT	.	183	39	173	0	.	21	8	13	0	0
WDR11	55717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	122664157	122664157	+	Splice_Site	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	WDR11-226	NM_018117	exon25	c.3028-1G>A	.	TTACTAGACAGAC	.	98	15	93	0	.	0	0	0	0	0
C11orf40	143501	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	4592781	4592781	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	C11orf40-92	NM_144663	exon4	c.C526G	p.R176G	CAGTGCGGTCCAA	.	86	14	67	0	.	0	0	0	0	0
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6646473	6646473	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	DCHS1-73	NM_003737	exon19	c.G7102C	p.D2368H	TGACATCCTCCAC	.	136	20	97	0	.	2	2	0	0	0
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46898795	46898795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	LRP4-94	NM_002334	exon23	c.A3232G	p.I1078V	TGGTAATGTTGAT	.	176	25	183	0	.	1	1	0	0	0
AMOTL1	154810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	94533391	94533391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	AMOTL1-91	NM_130847	exon3	c.G1035T	p.M345I	CGAGATGGTCAAG	.	127	22	121	0	.	3	1	2	0	0
TMBIM4	51643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	66546147	66546147	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TMBIM4-515	NM_016056	exon3	c.A216G	p.L72L	CAAAATTAAGGCA	.	123	20	114	0	.	0	0	0	0	0
HPD	3242	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122281677	122281677	+	Missense_Mutation	SNP	T	T	G	rs201305943		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	HPD-90	NM_002150	exon12	c.A893C	p.Q298P	CGCAGTTGTTTGT	.	202	59	153	1	T|0.999;G|0.000	11	6	5	0	0
ZNF140	7699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	133683062	133683062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ZNF140-90	NM_003440	exon5	c.T1199C	p.L400P	TTTCCCTCATTCT	.	47	7	21	0	.	9	3	6	0	0
EBPL	84650	broad.mit.edu	37	13	50235160	50235160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	EBPL-90	NM_032565	exon4	c.C565G	p.L189V	GTTCTAGCCATGA	.	162	3	152	0	.	33	33	0	0	0
KCTD12	115207	hgsc.bcm.edu	37	13	77460122	77460122	+	Silent	SNP	C	C	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	KCTD12-91	NM_138444	exon1	c.G162C	p.S54S	GGGCACCGACACC	.	6	4	2	0	.	7	5	2	0	0
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20845648	20845648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TEP1-95	NM_007110	exon41	c.C5879A	p.S1960Y	CCCTGGGAACCTA	.	76	17	79	0	.	0	0	0	0	0
CDH24	64403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23524349	23524349	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CDH24-90	NM_022478	exon3	c.A415T	p.K139X	GCACTTTGATGAT	.	138	23	118	0	.	0	0	0	0	0
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24885037	24885037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	NYNRIN-3	NM_025081	exon9	c.G4082T	p.G1361V	CCTGCGGCCTGGA	.	85	27	66	0	.	0	0	0	0	0
DTD2	112487	ucsc.edu	37	14	31926584	31926584	+	Missense_Mutation	SNP	G	G	A	rs3087952		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	.	NM_080664	exon1	c.C16T	p.R6W	GAATCCGGCTACC	.	40	6	21	3	.	14	8	6	0	0
ATXN3	4287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	92549507	92549507	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ATXN3-522	NM_004993	exon7	c.C571G	p.L191V	CAATAAGTTTTGG	.	47	7	42	0	.	4	4	0	0	0
ASPG	374569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	104565246	104565246	+	Silent	SNP	C	C	T	rs200662335		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	.	NM_001080464	exon6	c.C570T	p.D190D	GGTAGACGCTCGG	.	68	15	67	0	C|0.999;T|0.001	0	0	0	0	0
TLE3	7090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	70368460	70368460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TLE3-522	NM_001105192	exon5	c.A272T	p.Q91L	ATGATCTGTGCTA	.	57	7	56	0	.	6	6	0	0	0
CYP11A1	1583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	74640247	74640247	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CYP11A1-92	NM_000781	exon2	c.T419A	p.L140Q	TTCAACAGGACTC	.	102	15	120	0	.	0	0	0	0	0
CHD2	1106	broad.mit.edu	37	15	93480801	93480801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CHD2-229	NM_001042572	exon6	c.C497T	p.A166V	CCAGTGCAGAGAG	.	88	3	74	0	.	4	4	0	0	0
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30734928	30734928	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SRCAP-94	NM_006662	exon25	c.T4183C	p.L1395L	GCCCCCTTGACCA	.	123	30	109	0	.	6	4	2	0	0
AMFR	267	broad.mit.edu	37	16	56396896	56396896	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	AMFR-1009	NM_001144	exon14	c.T1857C	p.S619S	GGGGTCAGAGGAC	.	77	5	60	0	.	36	36	0	0	0
SLC12A3	6559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56919183	56919183	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SLC12A3-155	NM_001126108	exon15	c.A1832C	p.N611T	AGGTAAATTGGGG	.	99	35	68	0	.	0	0	0	0	0
TAF1C	9013	broad.mit.edu	37	16	84214979	84214979	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TAF1C-91	NM_005679	exon10	c.G1197T	p.V399V	GGTCAGCACCCGA	.	136	10	80	2	.	17	17	0	0	0
KIAA0753	9851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6526336	6526336	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	KIAA0753-90	NM_014804	exon6	c.C970G	p.R324G	CCCCTCGGTCAGT	.	256	68	178	0	.	1	1	0	0	0
SHBG	6462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7534128	7534128	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SHBG-90	NM_001040	exon3	c.C334G	p.H112D	CACAATCACTGGG	.	202	59	143	0	.	1	1	0	0	0
SOCS7	30837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	36508826	36508826	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SOCS7-227	NM_014598	exon1	c.C699A	p.T233T	TGGGACCGGCAAG	.	47	10	18	0	.	6	1	5	0	0
KRTAP4-7	100132476	hgsc.bcm.edu;ucsc.edu	37	17	39240796	39240796	+	Missense_Mutation	SNP	G	G	C	rs199957151		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	.	NM_033061	exon1	c.G338C	p.S113T	GCCCCAGCTGCTG	.	14	9	12	0	.	0	0	0	0	0
TOB1	10140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48940734	48940734	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TOB1-226	NM_005749	exon2	c.C645G	p.D215E	CAAGAGGTCATTC	.	230	64	135	0	.	177	90	87	0	0
ABCA8	10351	broad.mit.edu;bcgsc.ca	37	17	66878037	66878037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ABCA8-93	NM_007168	exon29	c.G3793T	p.A1265S	TCGTGGCTATCTT	.	124	29	100	2	.	1	1	0	0	0
TOMM40	10452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45397281	45397281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TOMM40-90	NM_001128917	exon5	c.G601A	p.A201T	TTCACAGCAGCCG	.	106	12	75	0	.	45	25	19	1	0
CNOT3	4849	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54648053	54648053	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CNOT3-93	NM_014516	exon7	c.G468A	p.K156K	CAAGAAGAAGGGC	.	402	67	323	1	.	11	3	8	0	0
ERMN	57471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	158178038	158178038	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ERMN-92	NM_001009959	exon4	c.A639T	p.E213D	TCGAACTTCATCT	.	73	12	61	0	.	0	0	0	0	0
UBR3	130507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170762609	170762609	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	UBR3-68	NM_172070	exon10	c.T1714A	p.F572I	GCTGCCTTTGCTG	.	101	29	73	0	.	4	3	1	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	EEF1B2-227	NM_021121	exon3	c.A127G	p.S43G	GTGTCCAGCCCAC	.	213	4	134	1	.	339	339	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	EEF1B2-227	NM_021121	exon3	c.G135A	p.P45P	CCCACCGCCTGCC	.	213	6	142	1	.	312	312	0	0	0
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220416332	220416332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	OBSL1-71	NM_015311	exon20	c.C5602A	p.H1868N	CGTCATGGATGAC	.	209	53	151	0	.	5	1	4	0	0
SNED1	25992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242026825	242026825	+	Silent	SNP	A	A	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SNED1-72	NM_001080437	exon30	c.A4140T	p.R1380R	CTACCGAGTTCAC	.	196	70	151	0	.	2	0	2	0	0
NKX2-2	4821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	21492814	21492814	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	NKX2-2-92	NM_002509	exon2	c.A569C	p.K190T	ATACCTTTCTCGG	.	48	5	29	0	.	0	0	0	0	0
KCNG1	3755	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49621336	49621336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	KCNG1-515	NM_002237	exon3	c.G782A	p.C261Y	TGGGAACAGTGGC	.	144	31	103	1	.	0	0	0	0	0
SETD4	54093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	37408418	37408418	+	Silent	SNP	G	G	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SETD4-154	NM_017438	exon11	c.C1320G	p.T440T	AAATCAGGTAAAA	.	65	13	78	0	.	3	0	3	0	0
MCM3AP	8888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47664760	47664760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	MCM3AP-291	NM_003906	exon23	c.G4999A	p.G1667R	GGAACCCGAGCAC	.	138	32	152	0	.	16	6	10	0	0
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21119517	21119517	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	PI4KA-454	NM_058004	exon21	c.G2445A	p.W815X	TTCTGGCCAGAGT	.	145	28	145	0	.	0	0	0	0	0
SRGAP3	9901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9100033	9100033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SRGAP3-344	NM_014850	exon7	c.C925A	p.L309M	AATCCAGGTTGTC	.	178	29	173	0	.	0	0	0	0	0
TBC1D5	9779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	17550057	17550057	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TBC1D5-91	NM_014744	exon3	c.T6C	p.Y2Y	GGAATGATACATT	.	109	32	106	0	.	4	1	3	0	0
ZNF445	353274	ucsc.edu;bcgsc.ca	37	3	44492934	44492934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ZNF445-91	NM_181489	exon4	c.G470A	p.G157D	CCTGTACCCATCC	.	200	42	164	2	.	2	2	0	0	0
RPL24	6152	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	101404668	101404668	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	RPL24-90	NM_000986	exon3	c.A186G	p.G62G	CGACTGTCCCTTT	.	161	50	127	1	.	0	0	0	0	0
ZBTB20	26137	broad.mit.edu	37	3	114070690	114070690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ZBTB20-95	NM_001164342	exon4	c.C235T	p.H79Y	TGCTGTGAATGCG	.	251	22	140	2	.	0	0	0	0	0
STAG1	10274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	136060303	136060303	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	STAG1-228	NM_005862	exon31	c.A3537T	p.R1179S	TCCAGTTCTCACT	.	115	31	77	0	.	3	3	0	0	0
VWA5B2	90113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183955086	183955086	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	.	NM_138345	exon11	c.A1606T	p.T536S	CCCGACACTGTGG	.	140	22	93	0	.	0	0	0	0	0
UBE2K	3093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39757353	39757353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	UBE2K-23	NM_005339	exon4	c.A293G	p.D98G	TGAAAGATCAATG	.	57	8	43	0	.	0	0	0	0	0
OCIAD2	132299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48887522	48887522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	OCIAD2-68	NM_001014446	exon7	c.C444A	p.D148E	CTGAGAGTCTCCC	.	195	42	158	0	.	216	109	107	0	0
DSPP	1834	bcgsc.ca	37	4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	DSPP-90	NM_014208	exon5	c.G3139A	p.D1047N	AGCAGCGATAGCA	.	211	13	178	0	.	0	0	0	0	0
ADH1B	125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	100231924	100231924	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ADH1B-136	NM_000668	exon8	c.A1101G	p.K367K	CTACCTTTTCCCA	.	90	13	100	0	.	0	0	0	0	0
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	1394869	1394869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SLC6A3-157	NM_001044	exon15	c.G1844A	p.R615H	CAGTGGCGGAGCT	.	83	5	66	0	.	0	0	0	0	0
MED10	84246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	6378594	6378594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	MED10-91	NM_032286	exon1	c.G3T	p.M1I	CTCCGCCATCGCC	.	47	10	29	0	.	5	5	0	0	0
MEGF10	84466	hgsc.bcm.edu;ucsc.edu	37	5	126790286	126790286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	MEGF10-94	NM_032446	exon24	c.G3009T	p.M1003I	CTATATGGGAAAA	.	26	4	18	0	.	0	0	0	0	0
SPINK13	153218	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	147661756	147661756	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SPINK13-22	NM_001040129	exon4	c.C198T	p.H66H	TGGCCACACTTTC	.	161	25	130	1	.	0	0	0	0	0
ADAM19	8728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156908922	156908922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ADAM19-294	NM_033274	exon22	c.G2580T	p.K860N	GAGTGCCTTCTGG	.	64	16	71	0	.	0	0	0	0	0
FLT4	2324	broad.mit.edu	37	5	180055903	180055903	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	FLT4-1490	NM_182925	exon8	c.A1082C	p.Y361S	GGGGGGTACGCTG	.	40	7	37	5	.	0	0	0	0	0
PRRT1	80863	bcgsc.ca	37	6	32119881	32119881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	PRRT1-153	.	.	.	.	GGCATTCAAGCCC	.	42	6	37	0	.	0	0	0	0	0
UNC5CL	222643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41000635	41000635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	UNC5CL-92	NM_173561	exon4	c.T937C	p.Y313H	AGATGTACGTGAG	.	77	10	77	0	.	0	0	0	0	0
DEFB110	245913	hgsc.bcm.edu;broad.mit.edu	37	6	49986835	49986835	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	DEFB110-45	NM_001037497	exon2	c.A59C	p.K20T	TTCTTTTTGGCTG	.	102	6	70	0	.	0	0	0	0	0
SERINC1	57515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	122766258	122766258	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SERINC1-91	NM_020755	exon10	c.G1293C	p.W431C	GCCAATCCAACTG	.	92	19	68	0	.	175	105	70	0	0
POM121C	100101267	broad.mit.edu;bcgsc.ca	37	7	75054953	75054953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	.	NM_001099415	exon9	c.C611T	p.P204L	GCCAATGGAGTTG	.	312	41	234	2	.	7	6	1	0	0
KPNA7	402569	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	98785927	98785927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	KPNA7-158	NM_001145715	exon6	c.T896C	p.V299A	ACCAAGACATTGA	.	161	17	116	1	.	0	0	0	0	0
DUSP26	78986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	33454873	33454873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	DUSP26-90	NM_024025	exon2	c.C161A	p.T54K	TTGCCTGTGTAGA	.	93	16	94	0	.	0	0	0	0	0
EFCAB1	79645	broad.mit.edu	37	8	49647656	49647656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	EFCAB1-90	NM_024593	exon1	c.C55T	p.H19Y	TACAATGCTTGCA	.	90	8	63	1	.	0	0	0	0	0
CA13	377677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	86162972	86162972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CA13-90	NM_198584	exon2	c.C41T	p.P14L	AAGGTCCTATTCA	.	91	11	105	0	.	0	0	0	0	0
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	132002781	132002781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ADCY8-157	NM_001115	exon2	c.C968T	p.A323V	GCCTGGGCCACAA	.	91	8	70	0	.	0	0	0	0	0
RMI1	80010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86617525	86617525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	RMI1-90	NM_024945	exon3	c.G1624T	p.D542Y	TATCTAGATGTAG	.	97	19	110	0	.	1	1	0	0	0
LPAR1	1902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	113704022	113704022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	LPAR1-24	NM_001401	exon3	c.C472T	p.R158W	TCATCCGTGTGTG	.	180	28	154	0	.	5	0	5	0	0
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131362363	131362363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SPTAN1-158	NM_003127	exon27	c.A3548T	p.E1183V	AGGATGAAACTGA	.	94	9	108	0	.	0	0	0	0	0
LCN10	414332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139633991	139633991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	LCN10-67	NM_001001712	exon6	c.A589G	p.T197A	GGATGGTGTGTGT	.	196	24	140	0	.	0	0	0	0	0
CXorf30	645090	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	36403047	36403047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CXorf30-62	NM_001098843	exon19	c.C1828T	p.R610C	TTTGTCCGTGAAA	.	212	60	203	1	.	0	0	0	0	0
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	75516201	75516205	+	Frame_Shift_Del	DEL	TGAAC	TGAAC	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	TGAAC	TGAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	MLH3-228	NM_014381	exon2	c.154_158del	p.52_53del	.	.	169	28	156	0	.	0	0	0	0	0
ARHGEF4	50649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	131801154	131801154	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ARHGEF4-292	NM_032995	exon11	c.1597delA	p.K533fs	.	.	202	54	126	0	.	0	0	0	0	0
MST1	4485	broad.mit.edu	37	3	49723112	49723112	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	MST1-278	NM_020998	exon11	c.1304delA	p.N435fs	TCTGGGTTCCGGC	.	406	8	254	0	.	0	0	0	0	0
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	126408614	126408614	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	FAT4-108	NM_024582	exon16	c.12931delA	p.K4311fs	.	.	65	15	54	0	.	0	0	0	0	0
CTNNA1	1495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	138118896	138118897	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CTNNA1-671	NM_001903	exon3	c.136_137del	p.46_46del	.	.	104	18	72	0	.	0	0	0	0	0
AEBP1	165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	44150535	44150535	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	AEBP1-90	NM_001129	exon13	c.1509delG	p.K503fs	.	.	105	30	73	0	.	0	0	0	0	0
TG	7038	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	133899726	133899727	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TG-145	NM_003235	exon9	c.2109_2110insTA	p.C703fs	.	.	497	91	416	0	.	0	0	0	0	0