Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRAMEF17	391004	hgsc.bcm.edu	37	1	13718601	13718601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_001099851	exon3	c.C1064T	p.T355M	TCCTCACGTTAAA	.	44	4	116	2	.	0	0	0	0	0
FAM46B	115572	hgsc.bcm.edu	37	1	27332864	27332864	+	Silent	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	FAM46B-90	NM_052943	exon2	c.C849T	p.C283C	GAGGTGGCAGTAC	.	27	2	68	0	.	1	1	0	0	0
IPO13	9670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44423086	44423086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	IPO13-226	NM_014652	exon7	c.C1405A	p.L469I	GAGGCCCTCCTCT	.	69	54	153	0	.	14	0	14	0	0
CSDE1	7812	hgsc.bcm.edu	37	1	115280131	115280131	+	Silent	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CSDE1-227	NM_001242891	exon6	c.T501C	p.G167G	ACTCTGACCCGGG	.	54	3	89	0	.	15	15	0	0	0
C1orf112	55732	hgsc.bcm.edu	37	1	169775219	169775219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	C1orf112-90	NM_018186	exon7	c.T553C	p.F185L	TGGAAGTTTATAA	.	18	2	35	0	.	0	0	0	0	0
RRP15	51018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	218480910	218480910	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RRP15-90	NM_016052	exon4	c.T641G	p.L214W	GTGTTTTGAGAGG	.	28	24	59	0	.	10	1	9	0	0
GALNT2	2590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230385000	230385000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GALNT2-92	NM_004481	exon9	c.C888A	p.N296K	GGGGAACCCAGTC	.	29	18	74	0	.	13	2	11	0	0
RGS7	6000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	241094065	241094065	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RGS7-232	NM_002924	exon6	c.C337G	p.P113A	AATAGGGGGTCTG	.	81	68	173	0	.	0	0	0	0	0
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	22022934	22022934	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MLLT10-658	NM_004641	exon21	c.A2782T	p.I928F	AATGGCATTGTAG	.	78	33	86	0	.	6	3	3	0	0
ANXA11	311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	81927005	81927005	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ANXA11-91	NM_145868	exon6	c.T626G	p.L209R	TTCCGCAGGACCT	.	61	31	70	0	.	286	161	125	0	0
PSTK	118672	hgsc.bcm.edu;broad.mit.edu	37	10	124740205	124740205	+	Silent	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	PSTK-91	NM_153336	exon1	c.A210G	p.R70R	AGCGCGACCGGCG	.	10	4	22	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253368	1253368	+	Silent	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_002458	exon15	c.C1821A	p.P607P	GGACCCCTGCTCC	.	35	2	41	0	.	0	0	0	0	0
INCENP	3619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	61912744	61912744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	INCENP-227	NM_001040694	exon13	c.G1819A	p.D607N	CAGATCGACGAGA	.	105	46	124	1	.	5	2	3	0	0
AP5B1	91056	hgsc.bcm.edu	37	11	65547487	65547487	+	Silent	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_138368	exon2	c.C477T	p.S159S	CTTGCAGCTCTCT	.	7	3	6	1	.	1	1	0	0	0
EED	8726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	85956385	85956385	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	EED-227	NM_003797	exon1	c.T114A	p.N38K	CGAGAATGTAAGT	.	35	17	40	0	.	0	0	0	0	0
SLC35F2	54733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	107677532	107677532	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SLC35F2-90	NM_017515	exon4	c.T485G	p.V162G	TGGATCACTCTGT	.	81	32	100	0	.	24	14	10	0	0
SLC6A12	6539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	308019	308019	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SLC6A12-91	NM_001122848	exon8	c.T790A	p.Y264N	CCTGGTAGGCTCC	.	128	69	104	0	.	28	13	14	1	0
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	401948	401948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	KDM5A-227	NM_001042603	exon27	c.T4843C	p.C1615R	TTTGGCAGTTCTG	.	151	48	137	0	.	15	8	7	0	0
C12orf5	57103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4461705	4461705	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	C12orf5-226	NM_020375	exon6	c.C661G	p.L221V	GCCACTCTGAGCA	.	125	49	136	0	.	8	4	4	0	0
GPR162	27239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6933600	6933600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GPR162-92	NM_019858	exon2	c.T536C	p.F179S	TCGGCTTTGGCGT	.	97	39	131	0	.	2	0	2	0	0
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26809443	26809443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ITPR2-542	NM_002223	exon19	c.G2231C	p.R744P	TACTGGCGATCCA	.	85	27	91	0	.	2	2	0	0	0
DIP2B	57609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51092173	51092173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	DIP2B-95	NM_173602	exon18	c.A2111G	p.Y704C	TGAGCTATGGGGT	.	104	38	117	0	.	2	0	2	0	0
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53680427	53680427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ESPL1-228	NM_012291	exon18	c.C3907A	p.P1303T	AGTGTCCCTGGCT	.	79	40	103	0	.	1	0	1	0	0
RDH5	5959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56115258	56115258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RDH5-91	NM_001199771	exon2	c.A290G	p.E97G	GGGTGGAGATGCA	.	103	40	132	1	.	41	24	17	0	0
PTPRB	5787	hgsc.bcm.edu	37	12	70964842	70964842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	PTPRB-226	NM_001109754	exon13	c.G3334T	p.D1112Y	GTACATCCCCGCT	.	60	3	46	0	.	1	1	0	0	0
GLIPR1L2	144321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	75785104	75785104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GLIPR1L2-91	NM_152436	exon1	c.C208A	p.P70T	GTCATTCCCCGAG	.	81	39	92	0	.	0	0	0	0	0
CUL4A	8451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113915023	113915023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CUL4A-651	NM_001008895	exon19	c.C2134G	p.H712D	CTTGGTCATAATC	.	31	14	43	0	.	30	18	12	0	0
LAMP1	3916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113963979	113963979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	LAMP1-514	NM_005561	exon3	c.T205C	p.S69P	CTGCCATCAGATG	.	115	45	110	0	.	275	132	143	0	0
DTD2	112487	hgsc.bcm.edu	37	14	31926584	31926584	+	Missense_Mutation	SNP	G	G	A	rs3087952		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_080664	exon1	c.C16T	p.R6W	GAATCCGGCTACC	.	10	2	7	1	.	11	6	5	0	0
BAZ1A	11177	hgsc.bcm.edu	37	14	35295323	35295323	+	Silent	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	BAZ1A-291	NM_182648	exon4	c.T432C	p.H144H	ATTTTGATGTGAT	.	18	2	50	0	.	0	0	0	0	0
NEMF	9147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	50292672	50292672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	NEMF-90	NM_004713	exon16	c.C1490T	p.A497V	TTGAATGCCTATT	.	23	17	47	0	.	0	0	0	0	0
PPM1A	5494	hgsc.bcm.edu;broad.mit.edu	37	14	60712638	60712638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	PPM1A-227	NM_177952	exon1	c.A73G	p.R25G	AAAAGAAGAATGG	.	4	4	12	0	.	0	0	0	0	0
GPHB5	122876	broad.mit.edu	37	14	63779788	63779788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GPHB5-67	.	.	.	.	TACAGACTCGATG	.	9	3	12	0	.	0	0	0	0	0
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	52606371	52606371	+	Silent	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MYO5A-93	NM_000259	exon40	c.A5364G	p.P1788P	ATTAACTGGAGTA	.	82	29	88	0	.	6	5	1	0	0
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2812806	2812806	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SRRM2-93	NM_016333	exon11	c.C2277G	p.S759R	GCGGAGCAGGTCT	.	285	170	237	0	.	21	5	16	0	0
PRKCB	5579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23848699	23848699	+	Silent	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	PRKCB-1530	NM_212535	exon2	c.C177T	p.G59G	CAGGGGCTTCGGG	.	342	202	337	1	.	0	0	0	0	0
ZNF48	197407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30408740	30408740	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ZNF48-90	NM_001214906	exon3	c.G169C	p.A57P	GATTTGGCTCCAG	.	206	46	183	1	.	16	8	8	0	0
ZC3H18	124245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	88653085	88653085	+	Silent	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ZC3H18-69	NM_144604	exon3	c.C681T	p.F227F	GTTCTTCATGAAA	.	74	18	44	0	.	0	0	0	0	0
SAT2	112483	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7530935	7530935	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SAT2-90	NM_133491	exon1	c.C19T	p.R7X	CCTCTCGGATCCG	.	58	18	77	0	.	102	63	39	0	0
KDM6B	23135	hgsc.bcm.edu	37	17	7750183	7750183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	KDM6B-205	NM_001080424	exon9	c.C758T	p.P253L	TACCACCACCACC	.	38	2	44	1	.	0	0	0	0	0
KDM6B	23135	hgsc.bcm.edu	37	17	7750211	7750211	+	Silent	SNP	A	A	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	KDM6B-205	NM_001080424	exon9	c.A786C	p.P262P	ACCACCACCACCC	.	33	5	25	1	.	1	1	0	0	0
TOP3A	7156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18181411	18181411	+	Missense_Mutation	SNP	G	G	A	rs201017469		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	TOP3A-228	NM_004618	exon18	c.C2405T	p.P802L	GCCGTGGGTGGTG	.	119	45	164	0	G|0.999;A|0.000	5	3	2	0	0
GPS1	2873	hgsc.bcm.edu	37	17	80011903	80011903	+	Missense_Mutation	SNP	C	C	A	rs199969665	alternate_allele	TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GPS1-226	NM_212492	exon3	c.C406A	p.R136S	ATCCACCGCAAGC	.	37	2	39	0	C|0.999;T|0.000	78	78	0	0	0
MRO	83876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	48331527	48331527	+	Silent	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MRO-90	NM_001127175	exon4	c.T468C	p.D156D	TACGTCATCTAAT	.	87	34	120	1	.	0	0	0	0	0
NEDD4L	23327	hgsc.bcm.edu	37	18	56056373	56056373	+	Silent	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	NEDD4L-658	NM_001144967	exon28	c.T2604C	p.I868I	TTCTATTTACAAG	.	40	2	48	0	.	33	33	0	0	0
LINGO3	645191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	2290213	2290213	+	Silent	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_001101391	exon2	c.G1563A	p.P521P	GTCGAGCGGCGCG	.	59	23	47	0	.	0	0	0	0	0
ZNF557	79230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7075688	7075688	+	Silent	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ZNF557-92	NM_001044387	exon4	c.C54G	p.A18A	CCCAGCCTCTCAG	.	108	52	140	0	.	4	4	0	0	0
CTXN1	404217	hgsc.bcm.edu	37	19	7990272	7990272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CTXN1-69	NM_206833	exon2	c.G152A	p.R51H	AGGATGCGCACGC	.	30	3	32	0	.	35	35	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13318726	13318726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CACNA1A-67	NM_001127222	exon47	c.G6922A	p.G2308S	CCGAGCCGCCGGC	.	3	2	1	1	.	0	0	0	0	0
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13346025	13346025	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CACNA1A-67	NM_001127221	exon33	c.C5134T	p.Q1712X	TCACCTGCATCCC	.	15	5	21	0	.	0	0	0	0	0
SLC1A6	6511	hgsc.bcm.edu	37	19	15067322	15067322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SLC1A6-186	NM_005071	exon6	c.C1135A	p.Q379K	GGGCTTGTAGCAT	.	33	2	29	0	.	41	41	0	0	0
GDF15	9518	hgsc.bcm.edu	37	19	18499142	18499142	+	Silent	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GDF15-650	NM_004864	exon2	c.C324A	p.A108A	TCGGGCCGCCCTT	.	48	3	67	0	.	191	187	3	0	1
ZNF461	92283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37147417	37147417	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_153257	exon4	c.C165G	p.I55M	TGAGGAGATTACG	.	78	32	94	0	.	0	0	0	0	0
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39058443	39058443	+	Silent	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RYR1-100	NM_000540	exon93	c.C13545T	p.P4515P	AGTTCCCGAGCCC	.	84	24	137	2	.	1	1	0	0	0
ERCC2	2068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45868315	45868315	+	Silent	SNP	G	G	A	rs139263710	alternate_allele	TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ERCC2-848	NM_000400	exon6	c.C462T	p.H154H	TCGGCAGTGGGGC	.	50	23	60	0	G|1.000;C|0.000	18	9	9	0	0
BAX	581	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	49464330	49464330	+	Silent	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	BAX-1271	NM_004324	exon5	c.T633C	p.Y211Y	GGTCTATAATGCG	.	96	45	83	0	.	13	7	6	0	0
ZNF816-ZNF321P	100529240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53432286	53432286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_001202473	exon4	c.T572C	p.L191S	GATGTCAAAATTA	.	200	89	214	0	.	4	3	1	0	0
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56244868	56244868	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	NLRP9-294	NM_176820	exon2	c.T329A	p.I110K	TCCCATATGAGTT	.	124	57	149	0	.	0	0	0	0	0
ZNF749	388567	hgsc.bcm.edu	37	19	57954667	57954667	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_001023561	exon3	c.C151G	p.H51D	TGTTGGCATGGAG	.	40	2	66	0	.	0	0	0	0	0
ZNF814	730051	broad.mit.edu	37	19	58385546	58385546	+	Missense_Mutation	SNP	G	G	T	rs201682072		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_001144989	exon3	c.C1212A	p.D404E	TTTTTTGTCAGTG	.	16	3	18	0	.	2	0	2	0	0
MZF1	7593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	59073766	59073766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MZF1-91	NM_198055	exon6	c.C1878A	p.H626Q	ACCGCAGTGGTAG	.	17	11	16	0	.	15	6	9	0	0
PSME4	23198	broad.mit.edu;ucsc.edu	37	2	54176408	54176408	+	Silent	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	PSME4-275	NM_014614	exon2	c.T255C	p.L85L	CCCATAAAGTCGA	.	32	9	39	0	.	0	0	0	0	0
CHRNA1	1134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	175624262	175624262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CHRNA1-518	NM_001039523	exon2	c.T143A	p.V48D	TCCACGACCTGGC	.	277	92	288	1	.	1	1	0	0	0
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190428363	190428363	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SLC40A1-91	NM_014585	exon7	c.T1349A	p.V450E	ATGGGCACAGATT	.	95	40	118	0	.	82	44	38	0	0
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197187250	197187250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	HECW2-668	NM_020760	exon7	c.G836A	p.G279E	AGTTTCCCCAGAA	.	194	77	223	0	.	1	1	0	0	0
ABCB6	10058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220075814	220075814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ABCB6-153	NM_005689	exon15	c.T1985C	p.L662P	GACCGGAGAGAGG	.	142	55	183	0	.	55	34	21	0	0
SIRPA	140885	hgsc.bcm.edu	37	20	1895835	1895835	+	Missense_Mutation	SNP	C	C	T	rs17855612		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SIRPA-227	NM_001040022	exon3	c.C170T	p.A57V	GCACTGCGACCTC	.	41	5	53	2	C|0.677;T|0.323	10	10	0	0	0
CPXM1	56265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2776796	2776796	+	Silent	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CPXM1-94	NM_001184699	exon10	c.G1254C	p.L418L	GCCCACCAGCTCT	.	83	32	101	0	.	0	0	0	0	0
MACROD2	140733	hgsc.bcm.edu	37	20	14066372	14066372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MACROD2-22	NM_080676	exon3	c.C269T	p.A90V	TCAATGCCGGTGA	.	39	2	37	0	.	0	0	0	0	0
HUNK	30811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	33371363	33371363	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	HUNK-334	NM_014586	exon11	c.A2011C	p.M671L	GGACAGATGTTAA	.	114	36	143	0	.	3	2	1	0	0
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18293513	18293513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MICAL3-68	NM_015241	exon28	c.A5512G	p.R1838G	CCTGTCTCCGAGC	.	76	26	68	0	.	21	17	4	0	0
MTMR3	8897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30413918	30413918	+	Silent	SNP	G	G	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MTMR3-292	NM_153050	exon16	c.G1677T	p.V559V	TCAGGTGCTGTAC	.	171	55	193	1	.	1	1	0	0	0
POLR2F	5435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38355418	38355418	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	POLR2F-153	NM_021974	exon3	c.C156G	p.I52M	GCGAATCACCACA	.	230	99	294	0	.	209	90	119	0	0
KDELR3	11015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38875733	38875733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	KDELR3-92	NM_016657	exon3	c.A328G	p.N110D	CTTGAAAACTACA	.	386	171	418	0	.	110	52	58	0	0
SEC13	6396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	10342967	10342967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SEC13-91	NM_183352	exon9	c.A947G	p.E316G	TGGCCCTCTGTCA	.	98	40	130	0	.	193	110	83	0	0
MLH1	4292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37042512	37042512	+	Missense_Mutation	SNP	G	G	A	rs63750133	alternate_allele	TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MLH1-2559	NM_000249	exon3	c.G274A	p.A92T	GATTTAGCCAGTA	.	82	41	111	0	.	11	3	8	0	0
XYLB	9942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38404484	38404484	+	Silent	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	XYLB-91	NM_005108	exon4	c.C267G	p.V89V	TCAAGTCCTAGCC	.	109	48	116	0	.	0	0	0	0	0
SLC38A3	10991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	50257565	50257565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SLC38A3-67	NM_006841	exon16	c.A1471G	p.I491V	ATCATCATTGACT	.	13	10	14	0	.	0	0	0	0	0
ABHD10	55347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	111700691	111700691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ABHD10-90	NM_001272069	exon2	c.A203G	p.Y68C	TGGCTTATAAGAA	.	140	62	136	0	.	59	25	34	0	0
EEFSEC	60678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	127981023	127981023	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	EEFSEC-91	NM_021937	exon3	c.G577C	p.A193P	CCAGAGGCCCCCG	.	172	75	203	2	.	17	9	8	0	0
ZMAT3	64393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	178785387	178785387	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ZMAT3-228	NM_022470	exon2	c.G154T	p.E52X	ATAACTCTTCTTC	.	123	45	161	0	.	8	5	3	0	0
PDS5A	23244	ucsc.edu	37	4	39911931	39911931	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_001100399	exon10	c.A1020C	p.R340S	TTCTAATCTCACA	.	7	1	14	0	.	28	17	11	0	0
SPOCK3	50859	hgsc.bcm.edu;bcgsc.ca	37	4	167713322	167713322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SPOCK3-136	NM_016950	exon8	c.C717A	p.S239R	CTTACTGCTTCTC	.	60	4	75	0	.	0	0	0	0	0
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1324927	1324927	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CLPTM1L-153	NM_030782	exon11	c.T1148A	p.F383Y	GTGCCAAACTGTT	.	94	43	100	1	.	1	1	0	0	0
ITGA2	3673	hgsc.bcm.edu	37	5	52368456	52368456	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ITGA2-226	NM_002203	exon19	c.A2360C	p.K787T	TCCACAAAGACTG	.	32	2	45	0	.	0	0	0	0	0
MAST4	375449	hgsc.bcm.edu	37	5	66440576	66440576	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MAST4-647	NM_001164664	exon22	c.C2810G	p.T937S	GCACCACCTTGCC	.	37	2	26	0	.	2	2	0	0	0
ARHGEF28	64283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	73205322	73205322	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_001080479	exon34	c.T4247A	p.I1416N	ACTCTATCCTCCG	.	20	10	30	0	.	35	17	18	0	0
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	115822558	115822558	+	Silent	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SEMA6A-92	NM_020796	exon10	c.C849T	p.C283C	AACTGAGCAGTTC	.	137	59	136	0	.	7	3	4	0	0
SLC25A48	153328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	135178132	135178132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SLC25A48-91	NM_145282	exon2	c.C74A	p.P25H	GCCACCCTCTGGA	.	204	69	180	0	.	0	0	0	0	0
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	170323085	170323085	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RANBP17-524	NM_022897	exon5	c.T455A	p.I152K	GAGTAATAATCCT	.	106	43	90	0	.	2	2	0	0	0
RNF44	22838	hgsc.bcm.edu	37	5	175957116	175957116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RNF44-658	NM_014901	exon7	c.C893A	p.P298Q	TAGGGTGGTGGGG	.	5	4	8	0	.	13	0	13	0	0
RANBP9	10048	broad.mit.edu	37	6	13711709	13711709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RANBP9-414	NM_005493	exon1	c.C29A	p.P10Q	TGCTGCGGCGGCG	.	10	2	12	0	.	0	0	0	0	0
SLC17A4	10050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25773825	25773825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SLC17A4-91	NM_005495	exon8	c.G910A	p.E304K	TTCTGTGAATACT	.	92	36	89	0	.	1	1	0	0	0
HLA-G	3135	ucsc.edu	37	6	29797247	29797247	+	Silent	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	HLA-G-517	NM_002127	exon5	c.C672T	p.T224T	GGCCACCCTGAGG	.	255	1	259	0	.	3	3	0	0	0
MUC21	394263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30955264	30955264	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MUC21-92	NM_001010909	exon2	c.T1312A	p.S438T	ACCAACTCTGGGT	.	179	75	211	0	.	0	0	0	0	0
MCM3	4172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	52141973	52141973	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MCM3-228	NM_002388	exon8	c.C1192G	p.Q398E	GAAGCTGAGACTT	.	39	12	65	0	.	31	16	15	0	0
GPRC6A	222545	hgsc.bcm.edu;bcgsc.ca	37	6	117113765	117113765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GPRC6A-96	NM_148963	exon6	c.A2321G	p.K774R	TCATATTTGCCTT	.	35	4	30	0	.	0	0	0	0	0
DPY19L1	23333	hgsc.bcm.edu	37	7	35009095	35009095	+	Missense_Mutation	SNP	C	C	A	rs201226448		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	DPY19L1-68	NM_015283	exon9	c.G745T	p.V249L	AAAATACATTGGA	.	103	7	62	0	.	17	15	2	0	0
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	138597164	138597164	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	KIAA1549-369	NM_020910	exon3	c.T2921G	p.I974S	TCTTTGATTGCTG	.	71	43	71	0	.	6	2	4	0	0
ATP6V0E2	155066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149576654	149576654	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_001100592	exon3	c.C530G	p.P177R	AATACCCGCACTG	.	28	19	25	0	.	88	35	53	0	0
GOT1L1	137362	hgsc.bcm.edu	37	8	37797478	37797478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GOT1L1-23	NM_152413	exon1	c.T70C	p.Y24H	GTTTGTAGGTCTT	.	36	2	29	0	.	0	0	0	0	0
LYN	4067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	56922610	56922610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	LYN-1002	NM_002350	exon13	c.C1480A	p.Q494K	TACTTACAGAGCG	.	103	39	125	0	.	15	10	5	0	0
GEM	2669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	95262646	95262646	+	Silent	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GEM-659	NM_181702	exon5	c.C783T	p.S261S	GGGCATGCTCTCC	.	67	25	83	0	.	8	2	6	0	0
NDUFAF6	137682	hgsc.bcm.edu	37	8	96037319	96037319	+	Missense_Mutation	SNP	G	G	C	rs201223057		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_152416	exon1	c.G83C	p.G28A	CTCTGGGTCTGTA	.	9	2	2	1	.	0	0	0	0	0
PTK2	5747	hgsc.bcm.edu	37	8	141684434	141684434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	PTK2-1517	NM_005607	exon29	c.T2738C	p.L913P	CTGCTGAGGCTGG	.	13	2	18	0	.	85	85	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144997533	144997533	+	Silent	SNP	C	C	G	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	PLEC-141	NM_201380	exon31	c.G6975C	p.L2325L	TGTTGTCAGCTCC	.	22	2	35	0	.	11	11	0	0	0
GRINA	2907	hgsc.bcm.edu	37	8	145066937	145066937	+	Silent	SNP	G	G	A	rs184930535		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GRINA-90	NM_001009184	exon7	c.G1044A	p.A348A	TGCTGCGCTGAAC	.	41	3	52	1	G|0.999;A|0.000	339	339	0	0	0
OR13J1	392309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35869823	35869823	+	Silent	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	OR13J1-68	NM_001004487	exon1	c.G576A	p.T192T	GACCGACGTGTTG	.	56	18	89	0	.	0	0	0	0	0
SECISBP2	79048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	91965762	91965762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SECISBP2-93	NM_024077	exon14	c.C2108T	p.S703L	TACAGTCAAAAGG	.	67	34	75	0	.	0	0	0	0	0
RAD23B	5887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	110091836	110091836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RAD23B-228	NM_002874	exon10	c.G1129A	p.G377R	GCATTAGGATTTC	.	102	33	114	0	.	0	0	0	0	0
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125751642	125751642	+	Silent	SNP	C	C	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RABGAP1-500	NM_012197	exon5	c.C657T	p.V219V	CTGTGTCAGAGGG	.	90	44	119	0	.	11	8	3	0	0
ZXDB	158586	hgsc.bcm.edu	37	X	57619097	57619097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ZXDB-130	NM_007157	exon1	c.G616A	p.G206R	CAGCCCGGGTGTC	.	13	2	17	0	.	4	0	4	0	0
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	211749303	211749308	+	In_Frame_Del	DEL	ATCTAA	ATCTAA	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	ATCTAA	ATCTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SLC30A1-93	NM_021194	exon2	c.946_951del	p.316_317del	.	.	95	72	214	0	.	0	0	0	0	0
SIDT2	51092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117058116	117058118	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SIDT2-90	NM_001040455	exon11	c.1038_1040del	p.346_347del	.	.	153	58	170	0	.	0	0	0	0	0
DISP2	85455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	40661086	40661086	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	DISP2-92	NM_033510	exon8	c.2773delA	p.N925fs	.	.	98	40	138	0	.	0	0	0	0	0
CHMP3	51652	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	86790455	86790455	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_016079	exon1	c.17delA	p.K6fs	.	.	219	93	223	0	.	0	0	0	0	0
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	123229112	123229112	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	KIAA1109-80	NM_015312	exon56	c.9850delT	p.F3284fs	.	.	171	65	193	0	.	0	0	0	0	0
HSPA9	3313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	137904733	137904733	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	HSPA9-226	NM_004134	exon5	c.416delA	p.N139fs	.	.	103	40	100	0	.	0	0	0	0	0
COL19A1	1310	broad.mit.edu	37	6	70866589	70866589	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	COL19A1-156	NM_001858	exon34	c.2266delG	p.G756fs	TACCCTGGGATAC	.	20	7	25	0	.	0	0	0	0	0
FERD3L	222894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	19184646	19184646	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	FERD3L-153	NM_152898	exon1	c.340delA	p.M114fs	.	.	80	26	64	0	.	0	0	0	0	0
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	84636164	84636164	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SEMA3D-138	NM_152754	exon16	c.1862delC	p.T621fs	.	.	441	305	276	0	.	0	0	0	0	0
NEIL2	252969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	11637150	11637150	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	NEIL2-659	NM_001135746	exon3	c.182delA	p.E61fs	.	.	190	91	183	0	.	0	0	0	0	0
RAD54B	25788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	95419720	95419720	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RAD54B-539	NM_012415	exon5	c.728delA	p.N243fs	.	.	116	58	99	0	.	0	0	0	0	0
DLGAP5	9787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	55655750	55655751	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	DLGAP5-92	NM_001146015	exon2	c.148_149insAT	p.V50fs	.	.	43	28	58	0	.	0	0	0	0	0
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	38568034	38568035	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	TTC3-590	NM_003316	exon42	c.5276_5277insT	p.S1759fs	.	.	305	129	340	0	.	0	0	0	0	0
MOCS2	4338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	52397195	52397196	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MOCS2-90	NM_004531	exon5	c.371_372insA	p.R124fs	.	.	175	83	175	0	.	0	0	0	0	0