Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NOC2L	26155	bcgsc.ca	37	1	887486	887486	+	Missense_Mutation	SNP	C	C	G	rs144707752		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NOC2L-92	NM_015658	exon11	c.G1225C	p.V409L	AGTGCACATACTG	.	95	4	72	0	C|1.000;G|0.000	38	38	0	0	0
MEGF6	1953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	3511980	3511980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MEGF6-90	NM_001409	exon3	c.T298C	p.Y100H	TGGTATACACCTG	.	117	41	105	0	.	0	0	0	0	0
TCEB3	6924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24080614	24080614	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	TCEB3-91	NM_003198	exon6	c.A1640C	p.E547A	AAGAAGAAGAAGC	.	120	42	124	0	.	23	13	10	0	0
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	31479871	31479871	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PUM1-92	NM_014676	exon4	c.C511G	p.Q171E	GCCATTGATCACC	.	363	122	340	0	.	41	27	14	0	0
SLC2A1	6513	hgsc.bcm.edu	37	1	43393458	43393458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SLC2A1-94	NM_006516	exon9	c.T1096C	p.Y366H	TCAGATAGGACAT	.	35	2	24	0	.	142	142	0	0	0
CDC20	991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	43828621	43828621	+	Splice_Site	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CDC20-227	NM_001255	exon11	c.1322-1G>A	.	GCTCCAGGTCACA	.	146	61	112	0	.	0	0	0	0	0
TTLL7	79739	hgsc.bcm.edu	37	1	84383373	84383373	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	TTLL7-91	NM_024686	exon14	c.G1501C	p.E501Q	CTTCTTCCTTCAA	.	37	2	31	0	.	0	0	0	0	0
DBT	1629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100680458	100680458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	DBT-91	NM_001918	exon7	c.C854A	p.T285N	AGTTCAGTAAGGT	.	80	29	59	0	.	9	3	6	0	0
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109807126	109807126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CELSR2-526	NM_001408	exon11	c.C5340A	p.S1780R	TCCCAGCCATGGG	.	184	71	148	0	.	50	22	28	0	0
CHIA	27159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	111862962	111862962	+	Silent	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CHIA-91	NM_201653	exon12	c.C1305T	p.N435N	AGCCAACGGCCTC	.	77	31	68	0	.	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	114308975	114308975	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	RSBN1-91	NM_018364	exon7	c.C2036G	p.P679R	TTTCTAGGGATGA	.	177	70	114	0	.	8	5	3	0	0
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152276023	152276023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FLG-106	NM_002016	exon3	c.G11339C	p.R3780T	CCAGACCTATCTA	.	744	264	567	0	.	1	1	0	0	0
PRRC2C	23215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171527271	171527271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	.	NM_015172	exon19	c.T6014C	p.I2005T	ATGATATCTCTAA	.	85	34	77	0	.	3	2	1	0	0
MRPS14	63931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	174987712	174987712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MRPS14-186	NM_022100	exon2	c.A46G	p.M16V	GAACCATCTGAAA	.	88	35	72	0	.	0	0	0	0	0
TNR	7143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	175355248	175355248	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	TNR-324	NM_003285	exon8	c.C1697G	p.P566R	GAGCCAGGCCGCA	.	105	31	91	0	.	0	0	0	0	0
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182856426	182856426	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	DHX9-92	NM_001357	exon28	c.G3670C	p.G1224R	TCCCGAGGTGGCT	.	136	58	103	0	.	114	48	66	0	0
RGS18	64407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	192128419	192128419	+	Silent	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	RGS18-229	NM_130782	exon2	c.C189T	p.S63S	CCGCTCCAGTAGA	.	83	21	64	0	.	1	1	0	0	0
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	232649814	232649814	+	Silent	SNP	A	A	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SIPA1L2-95	NM_020808	exon1	c.T1272A	p.I424I	GAGCGCAATCCGC	.	251	101	170	0	.	5	2	3	0	0
LGALS8	3964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	236702385	236702385	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	LGALS8-91	NM_006499	exon5	c.T341A	p.F114Y	ACAAATTCCAGGT	.	74	27	63	1	.	0	0	0	0	0
PFKFB3	5209	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	6258717	6258717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PFKFB3-117	NM_004566	exon5	c.C415A	p.H139N	ATCCTTCATTTTG	.	206	49	254	0	.	53	52	0	1	0
PRPF18	8559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13653627	13653627	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PRPF18-90	NM_003675	exon6	c.T523A	p.S175T	GGAGAGTCCTTAG	.	105	39	119	0	.	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	16941136	16941136	+	Silent	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CUBN-166	NM_001081	exon54	c.T8457C	p.P2819P	CCAGTGAGGGGAT	.	103	44	111	0	.	1	1	0	0	0
FBXW4	6468	hgsc.bcm.edu	37	10	103454329	103454329	+	Silent	SNP	G	G	C	rs61761937		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FBXW4-226	NM_022039	exon1	c.C69G	p.A23A	CCCCGCGGCCGGG	.	6	3	1	0	G|0.945;C|0.055	21	14	7	0	0
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115365939	115365939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NRAP-522	NM_001261463	exon33	c.G3805T	p.D1269Y	TTACGTCACTCAG	.	84	25	63	0	.	0	0	0	0	0
KRTAP5-4	387267	bcgsc.ca	37	11	1643279	1643279	+	Silent	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	.	NM_001012709	exon1	c.G45A	p.G15G	ACAGCCCCCACAG	.	264	12	245	2	.	2	2	0	0	0
MPEG1	219972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	58978386	58978386	+	Silent	SNP	A	A	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MPEG1-70	NM_001039396	exon1	c.T1953A	p.G651G	TGACAGACCACCA	.	180	58	174	0	.	3	3	0	0	0
FLRT1	23769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63885635	63885635	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FLRT1-90	NM_013280	exon2	c.G1896A	p.E632E	AGAAGAGTACGTG	.	139	58	126	0	.	0	0	0	0	0
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66617172	66617172	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PC-228	NM_000920	exon20	c.C3057G	p.H1019Q	CTTGAAGTGGGCA	.	97	26	81	0	.	34	16	18	0	0
DRD2	1813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113288847	113288847	+	Silent	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	DRD2-92	NM_016574	exon3	c.G297A	p.E99E	TTTCCACTCACCT	.	65	18	65	0	.	0	0	0	0	0
HINFP	25988	broad.mit.edu;bcgsc.ca	37	11	119001504	119001504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	HINFP-320	NM_015517	exon4	c.G251T	p.R84L	TCATCCGCCATGT	.	242	17	194	2	.	10	7	3	0	0
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	133816079	133816079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	IGSF9B-68	NM_014987	exon2	c.G139A	p.V47M	GGATCACGTCGCA	.	46	12	38	0	.	0	0	0	0	0
KLRC4-KLRK1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	10541382	10541382	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	.	NM_001199805	exon7	c.C28T	p.R10X	TGTGTCGAGACCT	.	111	47	98	0	.	0	0	0	0	0
PRB3	5544	broad.mit.edu	37	12	11420475	11420475	+	Silent	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PRB3-1	NM_006249	exon3	c.T708C	p.P236P	ACCTTGAGGTTTG	.	20	4	11	0	.	0	0	0	0	0
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12318144	12318144	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	LRP6-661	NM_002336	exon8	c.A1631T	p.Y544F	TAAACATAGTCAC	.	215	83	195	0	.	6	2	4	0	0
FAR2	55711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	29469910	29469910	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FAR2-90	NM_018099	exon9	c.T1092A	p.Y364X	TATCTATGACTGC	.	358	142	325	0	.	1	1	0	0	0
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40758851	40758851	+	Silent	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	LRRK2-533	NM_198578	exon49	c.A7389G	p.L2463L	ACAGCTAGGCAAG	.	96	34	73	0	.	19	6	13	0	0
ANO6	196527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	45803213	45803213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ANO6-516	NM_001204803	exon17	c.G2017T	p.D673Y	GAACAGGACTACC	.	168	58	161	0	.	43	15	28	0	0
KRT4	3851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53203234	53203234	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	KRT4-96	NM_002272	exon4	c.T767A	p.V256E	AACTCCACCTTGT	.	168	41	147	1	.	0	0	0	0	0
ATXN2	6311	hgsc.bcm.edu	37	12	112036797	112036797	+	Silent	SNP	C	C	T	rs4098854		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ATXN2-136	NM_002973	exon1	c.G522A	p.Q174Q	CTGCTGCTGCTGC	.	4	4	1	1	C|0.429;T|0.571	193	178	15	0	0
ZC3H13	23091	hgsc.bcm.edu	37	13	46549817	46549817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ZC3H13-92	NM_015070	exon12	c.A2069G	p.E690G	TCTCTCTCCCGCT	.	25	2	17	0	.	10	10	0	0	0
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52548876	52548876	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ATP7B-92	NM_001243182	exon2	c.C480T	p.S160S	TTCAATGGAGCTG	.	72	23	71	0	.	3	0	3	0	0
CDC16	8881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	115022697	115022697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CDC16-226	NM_003903	exon13	c.G1242T	p.Q414H	ATTTCAGAATGGA	.	166	53	142	0	.	0	0	0	0	0
PSME2	5721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24612672	24612672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PSME2-90	NM_002818	exon11	c.C666A	p.S222R	CAGGTTGCTGCTG	.	118	38	109	1	.	83	50	33	0	0
TINF2	26277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24709984	24709984	+	Silent	SNP	G	G	C	rs201135568	alternate_allele	TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	TINF2-227	NM_001099274	exon6	c.C702G	p.A234A	AGGCTTGGCTTTT	.	143	35	150	0	G|1.000;A|0.000	37	20	17	0	0
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	65008125	65008125	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	HSPA2-226	NM_021979	exon1	c.G558A	p.L186L	CGGCCTGGACAAG	.	154	45	160	0	.	30	13	17	0	0
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	65008173	65008173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	HSPA2-226	NM_021979	exon1	c.C606A	p.D202E	CTTTGACCTGGGC	.	200	58	169	0	.	34	10	24	0	0
ADAM20	8748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70991146	70991146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ADAM20-226	NM_003814	exon2	c.A479G	p.Y160C	TGGTAGTAGCAGT	.	161	71	123	0	.	0	0	0	0	0
NPC2	10577	broad.mit.edu;bcgsc.ca	37	14	74959964	74959964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NPC2-90	NM_006432	exon1	c.C14T	p.A5V	GTAGCTGCCAGGA	.	24	5	15	0	.	348	309	39	0	0
SAMD15	161394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	77844646	77844646	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SAMD15-90	NM_001010860	exon1	c.G885A	p.K295K	AAGAAAGGCAACT	.	123	47	126	0	.	3	2	1	0	0
NRXN3	9369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	79423648	79423648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NRXN3-587	NM_004796	exon8	c.G1220A	p.R407Q	CCGTTCGGGTGGT	.	172	65	150	0	.	1	0	1	0	0
SYNE3	161176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95903278	95903278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	.	NM_152592	exon14	c.T2417C	p.F806S	TGGGAGAAATCTT	.	145	68	135	0	.	0	0	0	0	0
BEGAIN	57596	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	101012903	101012903	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	BEGAIN-68	NM_020836	exon3	c.C111T	p.H37H	CAGGTAGTGGCGC	.	124	44	127	0	.	0	0	0	0	0
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	28431846	28431846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	HERC2-234	NM_004667	exon56	c.A8702T	p.D2901V	TTACAATCGATTC	.	71	27	54	0	.	3	2	1	0	0
ZNF770	54989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	35274327	35274327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ZNF770-91	NM_014106	exon3	c.A1309G	p.K437E	CTTTCTTATTCAC	.	167	65	117	0	.	26	11	15	0	0
BAHD1	22893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40758294	40758294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	BAHD1-90	NM_014952	exon7	c.T2308C	p.F770L	TATGACTTCCGCC	.	249	103	200	0	.	34	15	19	0	0
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51790750	51790750	+	Silent	SNP	T	T	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	DMXL2-99	NM_001174116	exon18	c.A4671C	p.S1557S	TTTACCTGAGCAA	.	45	16	33	1	.	0	0	0	0	0
MYO5C	55930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	52498142	52498142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MYO5C-145	NM_018728	exon37	c.C4408A	p.P1470T	GCTGTGGACTATT	.	47	19	47	0	.	6	5	1	0	0
C15orf60	283677	hgsc.bcm.edu	37	15	73843452	73843452	+	Silent	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	C15orf60-46	NM_001042367	exon4	c.A507G	p.Q169Q	AAGTCAAGGGAAG	.	34	2	36	0	.	0	0	0	0	0
PML	5371	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	74327953	74327953	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PML-1083	NM_033239	exon8	c.G2151A	p.R717R	GCAAAGGGGCATC	.	128	39	119	0	.	52	36	16	0	0
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	338194	338194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	AXIN1-684	NM_003502	exon11	c.G2517T	p.E839D	TCGAACCTCCTCA	.	170	47	166	0	.	53	27	26	0	0
GLYR1	84656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4864623	4864623	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	GLYR1-90	NM_032569	exon11	c.C932G	p.A311G	AGACGGGCCCCCT	.	61	17	43	0	.	33	12	21	0	0
NTAN1	123803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	15133833	15133833	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NTAN1-90	NM_173474	exon8	c.G632C	p.G211A	GGTCCTCCTGCTA	.	286	106	277	0	.	0	0	0	0	0
SH2B1	25970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28880661	28880661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SH2B1-92	NM_001145796	exon5	c.C1266A	p.D422E	CCAGGACCTGCTG	.	96	35	96	0	.	52	20	32	0	0
RABEP2	79874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28925762	28925762	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	RABEP2-137	NM_024816	exon5	c.A689T	p.D230V	GCGCTGTCATCGC	.	48	11	46	0	.	21	11	8	2	0
RNF40	9810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30775599	30775599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	RNF40-226	NM_014771	exon5	c.T542C	p.L181P	TGGAGCTGCAAGG	.	36	11	20	0	.	32	9	23	0	0
ITGAM	3684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31340556	31340556	+	Missense_Mutation	SNP	G	G	T	rs199790913		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ITGAM-226	NM_001145808	exon24	c.G2803T	p.V935F	CATGGGGTCTCCA	.	28	10	31	0	.	1	1	0	0	0
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	47684490	47684490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PHKB-154	NM_000293	exon19	c.G1833T	p.M611I	GAAAATGCATGGA	.	120	40	140	0	.	19	9	10	0	0
TANGO6	79613	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	68953020	68953020	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	.	NM_024562	exon12	c.A2025T	p.R675S	GCAGAGAGCCTGT	.	31	12	37	0	.	6	5	1	0	0
DHX33	56919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	5353590	5353590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	DHX33-228	NM_020162	exon10	c.C1661A	p.S554Y	TCGCTGGATATGA	.	298	114	243	1	.	5	4	1	0	0
FLII	2314	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18150014	18150014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FLII-91	NM_002018	exon23	c.G2945A	p.C982Y	ACGATGCACTGGA	.	33	9	14	0	.	235	121	114	0	0
C17orf53	78995	hgsc.bcm.edu	37	17	42228328	42228328	+	Splice_Site	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	C17orf53-90	NM_001171251	exon4	c.1225-1G>C	.	CTCTTAGCAGAGT	.	31	2	34	0	.	0	0	0	0	0
HOXB7	3217	broad.mit.edu	37	17	46688052	46688052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	HOXB7-90	NM_004502	exon1	c.G229A	p.G77S	CATAGCCGGCCGC	.	13	7	10	0	.	11	8	3	0	0
COG1	9382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	71197359	71197359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	COG1-91	NM_018714	exon7	c.A1393G	p.I465V	AAGCACATCCACT	.	195	69	187	0	.	11	5	6	0	0
QRICH2	84074	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74277019	74277019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	QRICH2-94	NM_032134	exon9	c.G3781T	p.G1261C	CACGGCCCAGCAG	.	42	12	49	0	.	1	0	1	0	0
SOGA2	23255	hgsc.bcm.edu;bcgsc.ca	37	18	8813135	8813135	+	Silent	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	.	NM_015210	exon12	c.C2763T	p.N921N	GAAGAACTGGAAC	.	26	14	36	0	.	0	0	0	0	0
ZNF358	140467	hgsc.bcm.edu;broad.mit.edu	37	19	7585576	7585576	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ZNF358-90	NM_018083	exon2	c.G1448C	p.R483T	GCTCCAGATCCAC	.	40	15	45	0	.	136	80	56	0	0
FARSA	2193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13039366	13039366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FARSA-91	NM_004461	exon6	c.G708T	p.Q236H	GAAGATCTGTCGG	.	32	20	42	1	.	38	21	17	0	0
CILP2	148113	hgsc.bcm.edu	37	19	19656391	19656391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CILP2-91	NM_153221	exon8	c.A3037G	p.M1013V	ACCATTATGCCCC	.	29	3	28	0	.	0	0	0	0	0
ZNF599	148103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35250173	35250173	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ZNF599-92	NM_001007248	exon4	c.A1533T	p.E511D	TCCACATTCTCTA	.	173	71	136	0	.	0	0	0	0	0
ZNF599	148103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35250175	35250175	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ZNF599-92	NM_001007248	exon4	c.G1531T	p.E511X	CACATTCTCTACA	.	176	71	142	0	.	0	0	0	0	0
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56370219	56370219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NLRP4-216	NM_134444	exon3	c.A1460G	p.N487S	TTGCCAATTTTGA	.	193	85	167	1	.	0	0	0	0	0
RASGRP3	25780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	33768640	33768640	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	RASGRP3-661	NM_170672	exon14	c.G1340C	p.S447T	TTGAAAGTATAGC	.	39	18	39	0	.	3	1	2	0	0
STRN	6801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37129786	37129786	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	STRN-91	NM_003162	exon5	c.A600C	p.K200N	CTGATTTTTGTCA	.	224	92	224	0	.	4	2	2	0	0
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97428005	97428005	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CNNM4-154	NM_020184	exon1	c.C1269A	p.Y423X	TCTCTACGTCAAA	.	209	74	217	0	.	3	2	1	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179599140	179599140	+	Silent	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	TTN-636	NM_001267550	exon52	c.T15411C	p.F5137F	ACTATTAAACGAA	.	232	81	185	0	.	0	0	0	0	0
NEUROD1	4760	broad.mit.edu	37	2	182543429	182543429	+	Silent	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NEUROD1-91	NM_002500	exon2	c.G159T	p.L53L	GTTCCTCAGTGAG	.	13	5	18	0	.	0	0	0	0	0
ANKRD44	91526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197889959	197889959	+	Silent	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ANKRD44-230	NM_001195144	exon17	c.A1683G	p.E561E	ATCTGATTCTTCA	.	107	39	118	0	.	1	0	1	0	0
ALS2CR8	79800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	203848266	203848266	+	Silent	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ALS2CR8-136	NM_024744	exon17	c.A2097G	p.Q699Q	GAGCCAAGTTAAA	.	93	33	111	0	.	5	4	1	0	0
SALL4	57167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	50407897	50407897	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SALL4-92	NM_020436	exon2	c.C1125G	p.D375E	CGCCTCGTCTTTG	.	128	45	134	0	.	2	1	1	0	0
RGL4	266747	hgsc.bcm.edu;bcgsc.ca	37	22	24034222	24034222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	RGL4-228	NM_153615	exon1	c.G5A	p.R2K	TGATGAGGAAGCT	.	88	5	109	0	.	2	2	0	0	0
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38328888	38328888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MICALL1-153	NM_033386	exon12	c.A2227G	p.I743V	GAGCTCATCTATG	.	77	31	67	0	.	0	0	0	0	0
MKL1	57591	hgsc.bcm.edu;bcgsc.ca	37	22	40816901	40816901	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MKL1-948	NM_020831	exon10	c.G831C	p.Q277H	CTGCTGCTGGTTG	.	72	4	59	0	.	16	16	0	0	0
SLC22A13	9390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38316610	38316610	+	Silent	SNP	C	C	A	rs200811458	alternate_allele	TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SLC22A13-91	NM_004256	exon4	c.C768A	p.T256T	GATCACCGGCACT	.	310	107	272	2	C|0.999;T|0.001	0	0	0	0	0
CAMP	820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48266893	48266893	+	Silent	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CAMP-91	NM_004345	exon4	c.T501C	p.L167L	GAATCTTGTACCC	.	225	83	164	0	.	0	0	0	0	0
IQCF2	389123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	51897303	51897303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	IQCF2-90	NM_203424	exon3	c.T412C	p.C138R	CACAACTGCCAGA	.	180	12	204	0	.	0	0	0	0	0
ARHGEF3	50650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	56779418	56779418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ARHGEF3-228	NM_001128615	exon10	c.A781C	p.K261Q	CTTGCTTTTTGTG	.	238	82	229	0	.	21	11	10	0	0
C3orf14	57415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	62317065	62317065	+	Silent	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	C3orf14-278	NM_020685	exon4	c.T243A	p.V81V	GGTGGTTTCTCTT	.	147	57	112	0	.	0	0	0	0	0
CPOX	1371	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	98309567	98309567	+	Silent	SNP	A	A	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CPOX-90	NM_000097	exon3	c.T720A	p.A240A	GCCCATAGCACAA	.	88	22	99	0	.	10	7	3	0	0
MCM2	4171	bcgsc.ca	37	3	127340566	127340566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MCM2-230	NM_004526	exon16	c.A2665G	p.N889D	AGGATGAACAAGT	.	80	4	76	0	.	12	12	0	0	0
PLSCR2	57047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	146167110	146167110	+	Silent	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PLSCR2-90	NM_001199978	exon8	c.G747A	p.K249K	CCAGTGCTTAGAA	.	228	90	164	0	.	1	1	0	0	0
MCCC1	56922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	182789038	182789038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MCCC1-92	NM_020166	exon6	c.A599G	p.Y200C	ACAGGATAGCCAA	.	129	30	103	0	.	16	14	2	0	0
IDUA	3425	hgsc.bcm.edu	37	4	980971	980971	+	Missense_Mutation	SNP	T	T	G	rs10794537		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	IDUA-91	NM_000203	exon1	c.T99G	p.H33Q	GGTGCATGTGGAC	.	2	2	1	1	T|0.175;G|0.825	5	0	5	0	0
CPZ	8532	hgsc.bcm.edu	37	4	8621334	8621334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CPZ-93	NM_001014447	exon11	c.T1949C	p.L650P	GGCTGCTCAAGTA	.	37	2	22	0	.	16	16	0	0	0
CDKL2	8999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76529105	76529105	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CDKL2-454	NM_003948	exon6	c.A691T	p.K231X	GATTTTTATTAAA	.	113	46	127	0	.	1	1	0	0	0
USO1	8615	broad.mit.edu	37	4	76721515	76721515	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	USO1-25	.	.	.	.	AGGACAAATTGCA	.	13	5	11	0	.	0	0	0	0	0
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123202841	123202841	+	Missense_Mutation	SNP	G	G	C	rs115036597	by1000genomes;alternate_allele	TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	KIAA1109-80	NM_015312	exon50	c.G8949C	p.M2983I	TGCCATGTTAGAT	.	160	57	124	0	G|0.999;T|0.001	2	0	2	0	0
FNIP2	57600	hgsc.bcm.edu	37	4	159816929	159816929	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FNIP2-68	NM_020840	exon16	c.C3178G	p.Q1060E	AGACTACAGGAGA	.	31	2	28	0	.	14	14	0	0	0
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	7878202	7878202	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MTRR-91	NM_024010	exon5	c.G628T	p.E210X	AAGTCAGAGCTGC	.	57	19	64	0	.	25	9	16	0	0
DROSHA	29102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	31515239	31515239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	DROSHA-227	NM_013235	exon7	c.G1146C	p.K382N	ATAGTTCTTGTCT	.	178	63	148	0	.	13	6	7	0	0
MROH2B	133558	hgsc.bcm.edu	37	5	41017998	41017998	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	.	NM_173489	exon28	c.C2838G	p.I946M	CTGACGGATGGTG	.	13	2	15	0	.	0	0	0	0	0
CHD1	1105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	98192299	98192299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CHD1-274	NM_001270	exon35	c.C4918T	p.H1640Y	CTGAATGTAACCG	.	45	29	68	0	.	15	2	13	0	0
PCDHGB2	56103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140741729	140741729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PCDHGB2-33	NM_018923	exon1	c.G2027A	p.S676N	ACCTCAGCGACCG	.	68	44	67	0	.	1	0	1	0	0
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180030377	180030377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FLT4-1490	NM_182925	exon30	c.G3907A	p.G1303S	TCTGGCCAGGTCC	.	47	17	27	0	.	0	0	0	0	0
CDKAL1	54901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	20548882	20548882	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CDKAL1-92	NM_017774	exon4	c.T232G	p.S78A	AATAATTCAGATG	.	171	68	127	0	.	6	2	4	0	0
HLA-G	3135	ucsc.edu	37	6	29797253	29797253	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	HLA-G-517	NM_002127	exon5	c.G678A	p.R226R	CCTGAGGTGCTGG	.	295	2	277	1	.	4893	4889	1	0	3
COL11A2	1302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33156195	33156195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	COL11A2-95	NM_080681	exon4	c.G550T	p.D184Y	GGGTGTCCAATAC	.	140	54	152	1	.	1	1	0	0	0
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	71003975	71003975	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	COL9A1-94	NM_001851	exon5	c.C591T	p.D197D	GTTGCAGTCAACA	.	215	73	135	0	.	0	0	0	0	0
FAM46A	55603	hgsc.bcm.edu	37	6	82461790	82461790	+	Silent	SNP	T	T	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FAM46A-90	NM_017633	exon2	c.A69C	p.L23L	GCCGCCTAGGGGG	.	17	2	13	1	.	2	2	0	0	0
BACH2	60468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90660214	90660214	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	BACH2-231	NM_021813	exon7	c.C1611T	p.P537P	GCTGCAGGGTGAG	.	102	40	68	0	.	0	0	0	0	0
PREP	5550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	105776878	105776878	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PREP-93	NM_002726	exon9	c.A1039T	p.N347Y	AGAAGTTGGACCT	.	91	35	67	0	.	18	8	10	0	0
CLIP2	7461	broad.mit.edu;bcgsc.ca	37	7	73790824	73790824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CLIP2-93	NM_003388	exon10	c.G2093T	p.G698V	TGGCTGGGCTGCA	.	19	8	20	0	.	32	15	17	0	0
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	83631283	83631283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SEMA3A-156	NM_006080	exon12	c.G1440T	p.M480I	AACTGTCATTTCT	.	79	22	73	0	.	0	0	0	0	0
SLC25A13	10165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	95818645	95818645	+	Silent	SNP	C	C	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SLC25A13-515	NM_001160210	exon9	c.G894A	p.E298E	AGTTCCCTCTTCC	.	54	23	48	0	.	13	9	4	0	0
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	10466983	10466983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	RP1L1-139	NM_178857	exon4	c.G4625T	p.R1542L	CGTGCTCGGAGCT	.	62	19	47	0	.	0	0	0	0	0
CA13	377677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	86180770	86180770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CA13-90	NM_198584	exon6	c.T583G	p.Y195D	TGGACATATCCTG	.	166	64	145	0	.	9	7	2	0	0
EFR3A	23167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	132982859	132982859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	EFR3A-139	NM_015137	exon10	c.G1128T	p.K376N	TGAGAAGATTGTG	.	182	56	141	0	.	20	14	6	0	0
KIAA0020	9933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	2810352	2810352	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	KIAA0020-91	NM_014878	exon16	c.G1715C	p.G572A	TCTCTCCCATTTT	.	91	21	65	0	.	0	0	0	0	0
PRSS3	5646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	33798069	33798069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PRSS3-90	NM_007343	exon3	c.T614C	p.L205P	ACACTCTGAGCTT	.	174	52	129	0	.	0	0	0	0	0
SEMA4D	10507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	92007357	92007357	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SEMA4D-92	NM_006378	exon10	c.T603A	p.Y201X	GATTGCATATTCT	.	139	40	138	0	.	19	16	3	0	0
STX17	55014	broad.mit.edu;bcgsc.ca	37	9	102730748	102730748	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	STX17-153	NM_017919	exon8	c.G702A	p.V234V	GCCTGTGGCAGGT	.	62	5	56	0	.	16	15	1	0	0
ABL1	25	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	133759486	133759486	+	Silent	SNP	G	G	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ABL1-3810	NM_007313	exon11	c.G1866A	p.L622L	CGCCTTGATCAAG	.	232	97	225	1	.	37	19	18	0	0
NUP214	8021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	134019822	134019822	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NUP214-1131	NM_005085	exon12	c.T1450A	p.F484I	TTCTCCTTTGGTT	.	479	161	413	0	.	9	4	5	0	0
PLS3	5358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	114883786	114883786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PLS3-193	NM_005032	exon16	c.G1798C	p.V600L	GCCAGAGTGTATG	.	183	72	156	0	.	36	2	34	0	0
WDR44	54521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	117526750	117526750	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	WDR44-133	NM_001184965	exon4	c.T342G	p.D114E	CATAGATCAAGTA	.	190	78	159	0	.	8	8	0	0	0
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	122801090	122801090	+	Silent	SNP	A	A	G	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	THOC2-133	NM_001081550	exon11	c.T1057C	p.L353L	TCTTTAATAAGGC	.	171	64	155	0	.	7	1	6	0	0
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152826336	152826336	+	Silent	SNP	C	C	T	rs181539158	by1000genomes;alternate_allele	TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ATP2B3-109	NM_001001344	exon17	c.C3042T	p.F1014F	CACTTTCGGGATT	.	106	50	114	0	C|1.000;A|0.000	0	0	0	0	0
STIL	6491	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	47717027	47717027	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	STIL-659	NM_001048166	exon17	c.3648delA	p.P1216fs	.	.	175	71	117	0	.	0	0	0	0	0
NBPF10	100132406	broad.mit.edu	37	1	145323659	145323659	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	.	NM_001039703	exon27	c.3496delA	p.K1166fs	GGAATTAAAAAGG	.	1209	7	987	0	.	0	0	0	0	0
FUT4	2526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	94278647	94278649	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FUT4-91	NM_002033	exon1	c.1348_1350del	p.450_450del	.	.	73	25	58	0	.	0	0	0	0	0
CLEC1B	51266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	10145838	10145838	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CLEC1B-90	NM_016509	exon6	c.594delT	p.F198fs	.	.	191	72	127	0	.	0	0	0	0	0
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	105408067	105408067	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	AHNAK2-47	NM_138420	exon7	c.13721delA	p.D4574fs	.	.	302	94	307	0	.	0	0	0	0	0
SKAP1	8631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	46423341	46423341	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SKAP1-90	NM_003726	exon4	c.206delA	p.D69fs	.	.	67	30	55	0	.	0	0	0	0	0
LRTM1	57408	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	54952818	54952823	+	In_Frame_Del	DEL	CAGGAA	CAGGAA	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	CAGGAA	CAGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	LRTM1-90	NM_020678	exon3	c.701_706del	p.234_236del	.	.	43	14	38	0	.	0	0	0	0	0
ZBTB20	26137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	114057877	114057878	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ZBTB20-95	NM_001164342	exon5	c.2200_2201del	p.734_734del	.	.	141	56	124	0	.	0	0	0	0	0
F12	2161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176829362	176829363	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	F12-90	NM_000505	exon14	c.1778_1779del	p.593_593del	.	.	44	13	41	0	.	0	0	0	0	0
PRPF38A	84950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	52881045	52881046	+	Nonsense_Mutation	INS	-	-	AGT	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PRPF38A-90	NM_032864	exon9	c.883_884insAGT	p.K295delinsKX	.	.	51	19	53	0	.	0	0	0	0	0
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	164781319	164781320	+	Frame_Shift_Ins	INS	-	-	GTATA	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PBX1-659	NM_001204963	exon6	c.930_931insGTATA	p.A310fs	.	.	100	23	83	0	.	0	0	0	0	0
SOGA2	23255	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	8813134	8813135	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	.	NM_015210	exon12	c.2762_2763insT	p.N921fs	.	.	26	14	37	0	.	0	0	0	0	0
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	407694	407695	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CHL1-583	NM_001253388	exon13	c.1647_1648insT	p.E549fs	.	.	87	36	71	0	.	0	0	0	0	0
DIAPH1	1729	broad.mit.edu	37	5	140953588	140953589	+	In_Frame_Ins	INS	-	-	GAT	rs35249023	alternate_allele	TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	DIAPH1-91	NM_005219	exon16	c.1829_1830insATC	p.P610delinsHP	GGAGGAGGAGGAG	.	6	3	7	0	.	0	0	0	0	0
ARMCX1	51309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	100808732	100808733	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ARMCX1-134	NM_016608	exon4	c.819_820insT	p.N273fs	.	.	103	44	96	0	.	0	0	0	0	0
PFKFB3	5209	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	6258718	6258719	+	Missense_Mutation	DNP	AT	AT	TA	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PFKFB3		exon5	c.T417A	p.H153L	CCTTCATTTTGCC	.	201.0	47.0	244.0	0.0	.	0	0	0	0	0
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115365937	115365938	+	Missense_Mutation	DNP	GT	GT	TA	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NRAP		exon33	c.A3806T	p.D1277V	CTTACGTCACTCA	.	84.0	24.0	63.0	0.0	.	0	0	0	0	0
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65134124	65134125	+	Missense_Mutation	DNP	TG	TG	GA	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	HELZ		exon22	c.C2875T	p.Q959S	ACACTTGATCAGC	.	197.0	74.0	173.0	0.0	.	0	0	0	0	0
UQCR10	29796	hgsc.bcm.edu	37	22	30163538	30163539	+	Missense_Mutation	DNP	GT	GT	AA	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	UQCR10		exon1	c.T152A	p.V51K	AGGGGGTGAGGGC	.	53.0	7.0	47.0	2.0	.	0	0	0	0	0