Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 ESPN 83715 ucsc.edu 37 1 6512054 6512054 + Silent SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . ESPN-514 NM_031475 exon10 c.C2223T p.P741P CATCCCCACGCAC . 11 4 19 0 . 7 4 3 0 0 AGL 178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 100346675 100346675 + Missense_Mutation SNP C C G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . AGL-92 NM_000644 exon15 c.C1943G p.S648C TTGTTTCTATGGC . 96 44 104 0 . 18 14 4 0 0 TMEM79 84283 broad.mit.edu 37 1 156256105 156256105 + Missense_Mutation SNP G G C novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . TMEM79-90 NM_032323 exon3 c.G812C p.G271A CCTTTGGGGAGCC . 106 3 143 0 . 3 3 0 0 0 PRRC2C 23215 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 171535917 171535917 + Missense_Mutation SNP G G A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . . NM_015172 exon22 c.G6487A p.E2163K GTCTCAGAAATGT . 37 11 49 0 . 42 18 24 0 0 AGT 183 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 230841797 230841797 + Missense_Mutation SNP A A T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . AGT-226 NM_000029 exon3 c.T1006A p.F336I CAGTGAAGGGCAC . 126 57 146 0 . 51 21 30 0 0 DIP2C 22982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 375449 375449 + Missense_Mutation SNP A A T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . DIP2C-156 NM_014974 exon30 c.T3677A p.V1226D TCTCGGACTTTGT . 54 24 32 0 . 27 16 11 0 0 ZEB1 6935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 31812949 31812949 + Missense_Mutation SNP G G T rs35653460 alternate_allele TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . ZEB1-518 NM_001174096 exon8 c.G2693T p.R898L AAATGCGGAAGAC . 147 59 140 0 G|0.987;A|0.013 13 7 6 0 0 SLK 9748 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 105763115 105763115 + Missense_Mutation SNP G G A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . SLK-549 NM_014720 exon9 c.G2179A p.G727S GAAATAGGTTCTT . 68 31 76 1 . 35 18 17 0 0 SEC23IP 11196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 121692658 121692658 + Missense_Mutation SNP T T C novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . SEC23IP-93 NM_007190 exon17 c.T2900C p.L967P TCGCTCTTCAGAG . 152 68 128 0 . 25 13 12 0 0 ADAM12 8038 broad.mit.edu;ucsc.edu 37 10 127789653 127789653 + Missense_Mutation SNP G G A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . ADAM12-716 NM_021641 exon9 c.C908T p.A303V AGCTGCGCATTGT . 62 6 71 0 . 0 0 0 0 0 DOCK1 1793 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 128788791 128788791 + Missense_Mutation SNP C C G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . DOCK1-698 NM_001380 exon6 c.C397G p.L133V CAAATTCTTTCTG . 29 12 48 0 . 17 8 9 0 0 OR56A1 120796 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 6048449 6048449 + Silent SNP A A G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . OR56A1-115 NM_001001917 exon1 c.T486C p.L162L TGCAGTAAGAAGC . 125 56 148 0 . 0 0 0 0 0 MSANTD4 84437 broad.mit.edu 37 11 105881299 105881299 + Missense_Mutation SNP C C G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . . NM_032424 exon2 c.G346C p.G116R GGAATCCAATCTT . 129 3 173 0 . 24 24 0 0 0 DDX12P 440081 ucsc.edu 37 12 9574037 9574037 + RNA SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . . . . . . TGGAGACCCCGCT . 161 5 107 2 . 40 11 28 0 1 C2CD5 9847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 22623804 22623804 + Silent SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . . NM_014802 exon21 c.G2400A p.Q800Q TAAAGCCTGATTT . 93 27 78 0 . 43 26 17 0 0 ITGB7 3695 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 53586547 53586547 + Missense_Mutation SNP T T C novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . ITGB7-231 NM_000889 exon13 c.A1874G p.Q625R AAGCACTGGCAGC . 106 65 75 0 . 37 11 26 0 0 TDG 6996 hgsc.bcm.edu 37 12 104378526 104378526 + Splice_Site SNP G G T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . TDG-661 NM_003211 exon8 c.793-1G>T . ATTCTAGCTCTGC . 63 5 49 1 . 0 0 0 0 0 MTIF3 219402 ucsc.edu 37 13 28014392 28014392 + Missense_Mutation SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . MTIF3-92 NM_001166263 exon4 c.G194A p.G65E TTTTTTCCTTCAT . 139 1 149 0 . 33 29 4 0 0 FSCB 84075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 44975261 44975261 + Silent SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . FSCB-587 NM_032135 exon1 c.G930A p.A310A ATTCTCCGCAACT . 88 38 88 0 . 0 0 0 0 0 TDP1 55775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 90429932 90429932 + Silent SNP G G A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . TDP1-92 NM_018319 exon3 c.G474A p.L158L CATGCTGGATAAA . 125 51 137 0 . 7 2 5 0 0 LRRC49 54839 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 71341787 71341787 + Missense_Mutation SNP G G A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . LRRC49-91 NM_001199017 exon16 c.G1912A p.E638K TATATAGAAGACC . 121 43 115 1 . 10 10 0 0 0 LRRC49 54839 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 71341790 71341790 + Missense_Mutation SNP G G A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . LRRC49-91 NM_001199017 exon16 c.G1915A p.D639N ATAGAAGACCTTG . 125 46 122 1 . 5 5 0 0 0 SRRM2 23524 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 2814253 2814253 + Missense_Mutation SNP G G A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . SRRM2-93 NM_016333 exon11 c.G3724A p.V1242I GAGGTGGTAGAGA . 303 72 221 0 . 84 60 24 0 0 SRCAP 10847 broad.mit.edu 37 16 30735227 30735227 + Silent SNP A A C novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . SRCAP-94 NM_006662 exon25 c.A4482C p.A1494A CTTGGCACCATCT . 153 7 125 0 . 86 85 1 0 0 C16orf86 388284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 67702137 67702137 + Nonsense_Mutation SNP C C G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . . NM_001012984 exon4 c.C588G p.Y196X CCAGTACGTCAAC . 32 18 25 0 . 17 9 8 0 0 CPNE7 27132 broad.mit.edu 37 16 89662976 89662976 + Missense_Mutation SNP C C A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . CPNE7-90 NM_014427 exon17 c.C1849A p.P617T CTGCCCCCGAGAA . 92 8 71 0 . 4 4 0 0 0 SCARF1 8578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 1538231 1538231 + Missense_Mutation SNP T T C novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . SCARF1-91 NM_003693 exon11 c.A2314G p.R772G CTGGTCTGACTGC . 87 51 75 0 . 11 7 3 1 0 CAMKK1 84254 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 3788622 3788622 + Missense_Mutation SNP C C G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . CAMKK1-334 NM_032294 exon2 c.G360C p.E120D ACCAACCTCTGCA . 46 14 39 0 . 0 0 0 0 0 ZNF232 7775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 5009512 5009512 + Silent SNP A A G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . ZNF232-154 NM_014519 exon5 c.T942C p.Y314Y TGAGTTATAAATG . 188 47 136 0 . 5 2 3 0 0 SLC13A2 9058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 26818545 26818545 + Missense_Mutation SNP G G A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . SLC13A2-90 NM_001145975 exon5 c.G812A p.S271N GCATGAGCCTGTG . 150 46 131 0 . 1 1 0 0 0 SPAG5 10615 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 26919846 26919846 + Missense_Mutation SNP T T C novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . SPAG5-90 NM_006461 exon3 c.A416G p.Q139R TGTTGCTGCCCCA . 253 145 185 0 . 5 5 0 0 0 UNC13D 201294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 73831766 73831766 + Silent SNP G G T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . UNC13D-92 NM_199242 exon19 c.C1689A p.L563L CTCCTTGAGGCTG . 70 23 62 1 . 1 1 0 0 0 CTAGE1 64693 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 19997258 19997258 + Missense_Mutation SNP G G A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . CTAGE1-1 NM_172241 exon1 c.C517T p.R173W CCAACCGTTCTTC . 169 71 253 0 . 0 0 0 0 0 HNRNPM 4670 ucsc.edu 37 19 8527467 8527467 + Splice_Site SNP T T G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . HNRNPM-68 NM_031203 exon3 c.336+2T>G . CAAGGGTAAGTGT . 151 2 127 0 . 0 0 0 0 0 ZNF20 7568 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 12246707 12246707 + Missense_Mutation SNP A A C novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . ZNF20-22 NM_021143 exon2 c.T16G p.S6A CCACTGAATCCTG . 87 36 128 1 . 0 0 0 0 0 LGI4 163175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 35617247 35617247 + Missense_Mutation SNP A A G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . LGI4-91 NM_139284 exon8 c.T1226C p.V409A GCATAGACATCCT . 36 17 30 0 . 0 0 0 0 0 ZNF546 339327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 40520846 40520846 + Missense_Mutation SNP G G A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . ZNF546-155 NM_178544 exon7 c.G1669A p.E557K TGTAAGGAATGTG . 84 45 74 0 . 4 2 0 2 0 EGLN2 112398 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 41306603 41306603 + Nonsense_Mutation SNP T T A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . EGLN2-228 NM_053046 exon2 c.T126A p.C42X GCCCTGTCCCCTG . 52 15 56 0 . 26 16 10 0 0 IZUMO2 126123 ucsc.edu;bcgsc.ca 37 19 50666348 50666348 + Missense_Mutation SNP A A G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 A A . . . . Unknown Untested Somatic WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . IZUMO2-90 NM_152358 exon1 c.T104C p.L35P GAGCGCAGGTGAC . 16 4 26 0 . 0 0 0 0 0 PUM2 23369 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 20518349 20518349 + Missense_Mutation SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . PUM2-91 NM_015317 exon2 c.G109A p.G37S ATATGCCTTTTTG . 91 35 108 0 . 25 14 11 0 0 UNC50 25972 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 99232895 99232895 + Missense_Mutation SNP A A T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . UNC50-90 NM_014044 exon5 c.A542T p.H181L TGGCAGATGTTAT . 106 45 140 1 . 3 1 2 0 0 TTN 7273 ucsc.edu;bcgsc.ca 37 2 179611166 179611166 + Missense_Mutation SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . TTN-636 NM_133379 exon46 c.G15961A p.V5321I CTTTAACGTCTTT . 36 10 67 0 . 0 0 0 0 0 ANKRD44 91526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 197986231 197986231 + Missense_Mutation SNP T T C novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . ANKRD44-230 NM_153697 exon8 c.A731G p.H244R GCGATGTGAAGCG . 50 18 54 0 . 0 0 0 0 0 FZD5 7855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 208632800 208632800 + Missense_Mutation SNP A A G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . FZD5-660 NM_003468 exon2 c.T664C p.C222R GGTAGCAGGGTAC . 24 11 25 0 . 37 19 18 0 0 ZNF142 7701 ucsc.edu;bcgsc.ca 37 2 219503380 219503380 + Silent SNP G G T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . ZNF142-137 NM_001105537 exon10 c.C4746A p.T1582T AAGGTGGGTGCGC . 49 10 66 2 . 31 19 12 0 0 SLC24A3 57419 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 19665982 19665982 + Missense_Mutation SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . SLC24A3-91 NM_020689 exon12 c.C1301T p.P434L AAGGACCGTACAC . 106 41 102 0 . 1 0 1 0 0 PCIF1 63935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 44574469 44574469 + Missense_Mutation SNP A A C novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . PCIF1-91 NM_022104 exon12 c.A1288C p.I430L GTCTGCATCCGGT . 147 51 141 1 . 61 25 36 0 0 ARFGEF2 10564 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 47641990 47641990 + Silent SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . ARFGEF2-358 NM_006420 exon36 c.C4896T p.Y1632Y CAATTACGAGCAG . 66 27 90 0 . 30 10 20 0 0 SNAI1 6615 ucsc.edu 37 20 48600833 48600833 + Silent SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . SNAI1-227 NM_005985 exon2 c.C555T p.C185C AACCTGCGGGAAG . 25 4 27 0 . 1 1 0 0 0 LAMA5 3911 ucsc.edu 37 20 60891785 60891785 + Silent SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . LAMA5-93 NM_005560 exon57 c.G7698A p.L2566L GTTGGCCAGGAGC . 31 5 24 0 . 73 73 0 0 0 KRTAP10-3 386682 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 45978008 45978008 + Silent SNP G G A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . KRTAP10-3-91 NM_198696 exon1 c.C591T p.L197L GCAGAGGAGGGAC . 33 16 68 0 . 0 0 0 0 0 GSTT1 2952 broad.mit.edu;bcgsc.ca 37 22 24376512 24376512 + Missense_Mutation SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . GSTT1-91 NM_000853 exon5 c.G634A p.E212K TGACCTCATGGGC . 80 7 49 0 . 233 227 6 0 0 SEPT3 55964 hgsc.bcm.edu 37 22 42373072 42373072 + Missense_Mutation SNP T T G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . SEPT3-68 NM_019106 exon1 c.T4G p.S2A TTCATGTCCAAAG . 38 3 32 0 . 0 0 0 0 0 ZNF620 253639 bcgsc.ca 37 3 40553892 40553892 + Splice_Site SNP G G C novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . ZNF620-91 NM_175888 exon4 c.152-1G>C . TGGGCAGCATTCC . 57 4 36 0 . 0 0 0 0 0 FBXW12 285231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 48436087 48436087 + Missense_Mutation SNP A A G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . FBXW12-226 NM_207102 exon11 c.A1358G p.D453G TAAGTGACTCCAG . 197 65 121 1 . 0 0 0 0 0 KIAA1407 57577 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 113721375 113721375 + Missense_Mutation SNP C C A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . KIAA1407-92 NM_020817 exon12 c.G1989T p.E663D TGCTCTCTCTTCC . 108 34 51 0 . 4 2 2 0 0 POLQ 10721 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 121217327 121217327 + Missense_Mutation SNP T T G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . POLQ-664 NM_199420 exon13 c.A2150C p.K717T TACCTTTTATGGA . 221 118 170 0 . 0 0 0 0 0 SEC62 7095 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 169706125 169706125 + Silent SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . SEC62-69 NM_003262 exon7 c.C708T p.A236A TGTAGCCAGTATT . 180 49 150 0 . 89 59 30 0 0 ACAP2 23527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 195006526 195006526 + Silent SNP T T C novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . ACAP2-136 NM_012287 exon22 c.A2235G p.P745P TTGACCTGGCTGT . 81 15 63 0 . 1 0 1 0 0 LMLN 89782 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 197687145 197687145 + Missense_Mutation SNP G G A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . LMLN-91 NM_001136049 exon1 c.G53A p.G18D GAGTGGGTTACTC . 61 13 47 0 . 9 9 0 0 0 CWH43 80157 broad.mit.edu 37 4 49040168 49040168 + Missense_Mutation SNP C C G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . CWH43-93 NM_025087 exon13 c.C1774G p.L592V GATTATCTACAGC . 284 5 290 0 . 0 0 0 0 0 TET2 54790 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 106157461 106157461 + Nonsense_Mutation SNP G G T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . TET2-4618 NM_001127208 exon3 c.G2362T p.E788X CATGGTGAAAATC . 49 24 43 0 . 6 3 3 0 0 TRPC3 7222 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 122853525 122853525 + Silent SNP G G A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . TRPC3-92 NM_001130698 exon2 c.C888T p.S296S AGCCGGGCTGGCC . 29 10 46 0 . 0 0 0 0 0 CPE 1363 bcgsc.ca 37 4 166385584 166385584 + Missense_Mutation SNP A A G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . CPE-155 NM_001873 exon2 c.A350G p.E117G GGAATGAGGCTGT . 59 4 67 0 . 40 40 0 0 0 FAT1 2195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 187530418 187530418 + Silent SNP T T A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . FAT1-34 NM_005245 exon16 c.A10125T p.I3375I GCCATCTATAATT . 82 32 73 0 . 236 114 122 0 0 AGGF1 55109 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 76344781 76344781 + Missense_Mutation SNP C C A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . AGGF1-117 NM_018046 exon8 c.C1334A p.T445N AACATACTCTCCG . 179 82 150 0 . 33 15 18 0 0 PCDH12 51294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 141336615 141336615 + Missense_Mutation SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . PCDH12-93 NM_016580 exon1 c.G802A p.A268T CTGTGGCGGTCAG . 97 37 76 0 . 5 5 0 0 0 AGXT2L2 85007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 177642285 177642285 + Silent SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . AGXT2L2-91 NM_153373 exon9 c.G1074A p.G358G GACATCCCCGACG . 53 27 62 0 . 0 0 0 0 0 OR2Y1 134083 broad.mit.edu;bcgsc.ca 37 5 180166694 180166694 + Missense_Mutation SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . OR2Y1-68 NM_001001657 exon1 c.G365A p.R122H GCATAGCGGTCAA . 35 11 49 0 . 0 0 0 0 0 MRS2 57380 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 24418322 24418322 + Missense_Mutation SNP A A T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . MRS2-68 NM_020662 exon8 c.A847T p.S283C AAGAGCAGTGCTG . 99 43 74 1 . 0 0 0 0 0 KCTD20 222658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 36454734 36454734 + Missense_Mutation SNP C C T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . KCTD20-92 NM_173562 exon8 c.C1042T p.R348C GTACAACGCCCCT . 119 45 182 0 . 31 17 14 0 0 ULBP1 80329 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 150289835 150289835 + Missense_Mutation SNP C C A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . ULBP1-91 NM_025218 exon2 c.C178A p.P60T GAAAGGCCTTTTC . 192 90 213 0 . 0 0 0 0 0 MLLT4 4301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 168344092 168344092 + Missense_Mutation SNP T T A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . MLLT4-685 NM_001040000 exon24 c.T3155A p.L1052Q GACGTCTAGCTGC . 250 105 233 0 . 0 0 0 0 0 TNRC18 84629 hgsc.bcm.edu 37 7 5401235 5401235 + Missense_Mutation SNP T T G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . TNRC18-46 NM_001080495 exon14 c.A4651C p.S1551R CGCTACTGTGGCC . 15 13 6 2 . 0 0 0 0 0 ACTB 60 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 5568236 5568236 + Missense_Mutation SNP T T C novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . ACTB-226 NM_001101 exon4 c.A478G p.T160A TGTGGGTGACCCC . 149 98 152 1 . 5733 2411 3312 4 6 C7orf26 79034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 6639834 6639834 + Missense_Mutation SNP T T G novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . C7orf26-91 NM_024067 exon4 c.T955G p.F319V ATCCTCTTCGACC . 46 29 48 0 . 33 15 18 0 0 ASB4 51666 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 95125264 95125264 + Missense_Mutation SNP G G A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . ASB4-226 NM_016116 exon2 c.G382A p.D128N CTCTGTGATCGTG . 112 23 101 0 . 0 0 0 0 0 NRCAM 4897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 107808822 107808822 + Silent SNP G G A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . NRCAM-156 NM_001037132 exon26 c.C3213T p.S1071S AAGATTGCTGATC . 81 27 66 0 . 0 0 0 0 0 CHD7 55636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 61654762 61654762 + Silent SNP T T C novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . CHD7-141 NM_017780 exon2 c.T771C p.H257H GTTCCATCACCAC . 218 89 258 1 . 5 3 2 0 0 PTPRD 5789 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 8460558 8460558 + Missense_Mutation SNP G G T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . PTPRD-912 NM_002839 exon33 c.C3728A p.T1243N GGGCTGGTTGCAT . 94 40 85 1 . 0 0 0 0 0 CEL 1056 broad.mit.edu 37 9 135941956 135941956 + Missense_Mutation SNP G G T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . CEL-91 NM_001807 exon5 c.G587T p.W196L TTGCTTGGGTGAA . 145 9 174 0 . 0 0 0 0 0 CACNA1B 774 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 140943670 140943670 + Silent SNP T T C novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . CACNA1B-138 NM_001243812 exon24 c.T3613C p.L1205L ATCGACTTGGGAC . 88 38 89 0 . 0 0 0 0 0 CASK 8573 hgsc.bcm.edu 37 X 41448782 41448782 + Missense_Mutation SNP G G C novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . CASK-616 NM_001126054 exon13 c.C1219G p.Q407E CTCTCTGTACTGC . 36 2 23 0 . 25 25 0 0 0 MAGT1 84061 ucsc.edu;bcgsc.ca 37 X 77150838 77150838 + Missense_Mutation SNP C C A novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . MAGT1-63 NM_032121 exon1 c.G166T p.V56F AGGGAACGTCGCA . 32 5 30 0 . 34 34 0 0 0 VPS9D1 9605 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 89775318 89775318 + Frame_Shift_Del DEL G G - novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . . NM_004913 exon13 c.1644delC p.P548fs . . 29 12 27 0 . 0 0 0 0 0 FAM20A 54757 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 66538845 66538846 + Frame_Shift_Del DEL AA AA - novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 AA AA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . FAM20A-90 NM_017565 exon6 c.917_918del p.306_306del . . 131 30 102 0 . 0 0 0 0 0 SYN2 6854 broad.mit.edu 37 3 12046124 12046126 + In_Frame_Del DEL AGC AGC - novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 AGC AGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . SYN2-24 . . . . CCAGCAAGCGCCG . 9 3 13 0 . 0 0 0 0 0 FRYL 285527 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 48598002 48598003 + Frame_Shift_Del DEL TT TT - novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 TT TT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . FRYL-69 NM_015030 exon14 c.1050_1051del p.350_351del . . 64 18 54 0 . 0 0 0 0 0 NME5 8382 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 137474383 137474383 + Frame_Shift_Del DEL C C - novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . NME5-115 NM_003551 exon2 c.87delG p.E29fs . . 63 32 64 0 . 0 0 0 0 0 NME5 8382 hgsc.bcm.edu 37 5 137474383 137474386 + Frame_Shift_Del DEL CTCC CTCC - novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 CTCC CTCC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . NME5-115 NM_003551 exon2 c.84_87del p.28_29del . . 70 25 65 0 . 0 0 0 0 0 LCN12 286256 broad.mit.edu 37 9 139846817 139846819 + In_Frame_Del DEL TGC TGC - novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 TGC TGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . LCN12-90 NM_178536 exon1 c.38_40del p.13_14del TCTCCTTGCTGAA . 25 7 28 0 . 0 0 0 0 0 SMARCB1 6598 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 24175838 24175839 + Frame_Shift_Ins INS - - T novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . SMARCB1-2699 NM_003073 exon8 c.1066_1067insT p.L356fs . . 111 91 149 0 . 0 0 0 0 0 BNC2 54796 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 16552614 16552615 + In_Frame_Ins INS - - GAA novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . BNC2-92 NM_017637 exon5 c.583_584insTTC p.S195delinsFS . . 77 17 90 0 . 0 0 0 0 0 NME5 8382 hgsc.bcm.edu 37 5 137474385 137474386 + Nonsense_Mutation DNP CC CC AG novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 CC CC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . NME5 exon2 c.G84C p.EE28D* TATCTCCTCCTCT . 66.0 33.0 67.0 0.0 . 0 0 0 0 0 GTF3C5 9328 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 135917679 135917680 + Missense_Mutation DNP TT TT AA novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 TT TT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . GTF3C5 exon2 c.T360A p.I120K CACCATTTACAAA . 94.0 35.0 119.0 0.0 . 0 0 0 0 0 POLDIP2 26073 broad.mit.edu 37 17 26684350 26684351 + Missense_Mutation DNP GC GC AT novel TCGA-GL-6846-01A-11D-1961-08 TCGA-GL-6846-10A-01D-1962-08 GC GC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 98a51f37-1d5f-4db0-b785-b751168bf46e 631ce65b-a92f-4c3c-b0eb-c2e13249edd7 . . . . . . TCGACGCTGGCGA . 31 18 9 0 . 0 0 0 0 0