Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CC2D1B	200014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52819228	52819228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	CC2D1B-92	NM_032449	exon24	c.C2540G	p.T847S	TTCTCAGTGACCA	.	46	22	48	0	.	58	29	29	0	0
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	98058809	98058809	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	DPYD-278	NM_000110	exon10	c.A1093T	p.K365X	AGCCTTTTCTGAA	.	140	53	116	0	.	0	0	0	0	0
YY1AP1	55249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	155630357	155630357	+	Silent	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	YY1AP1-93	NM_001198903	exon10	c.C1758T	p.L586L	AATCCGGAGCACC	.	148	40	135	1	.	30	17	13	0	0
RHBG	57127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156347130	156347130	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	RHBG-92	NM_020407	exon2	c.G226C	p.G76R	GGCTTTGGCTTCC	.	147	47	207	0	.	0	0	0	0	0
TDRD5	163589	broad.mit.edu	37	1	179621298	179621298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TDRD5-94	NM_173533	exon13	c.G2126T	p.S709I	AGATAAGTCCACA	.	76	4	39	0	.	0	0	0	0	0
ADD3	120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	111860443	111860443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ADD3-157	NM_001121	exon2	c.C32G	p.T11S	TGATTACCACTCC	.	72	28	77	0	.	0	0	0	0	0
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	10647666	10647666	+	Silent	SNP	C	C	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MRVI1-25	NM_130385	exon9	c.G1215C	p.R405R	CTGCAGCCGGGGG	.	30	11	42	0	.	0	0	0	0	0
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18309441	18309441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	HPS5-133	NM_181507	exon17	c.C2560T	p.R854W	CTTACCGGGTAGC	.	53	24	53	0	.	0	0	0	0	0
NPAT	4863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108032024	108032024	+	Silent	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	NPAT-117	NM_002519	exon17	c.T3789C	p.S1263S	TAAATCACTACTA	.	132	54	164	0	.	4	2	2	0	0
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	133790126	133790126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	IGSF9B-68	NM_014987	exon18	c.G3494T	p.G1165V	TCCAGGCCAAATG	.	99	39	108	0	.	0	0	0	0	0
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	133794760	133794760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	IGSF9B-68	NM_014987	exon15	c.G2074A	p.D692N	TCAGATCCTGCAT	.	174	55	239	0	.	0	0	0	0	0
TROAP	10024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49717751	49717751	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TROAP-91	NM_001100620	exon3	c.A268C	p.N90H	CCTCGGAACCCCT	.	136	34	157	1	.	3	2	1	0	0
KRT8	3856	hgsc.bcm.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	KRT8-92	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	35	4	46	1	.	96	96	0	0	0
RDH5	5959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56118170	56118170	+	Silent	SNP	A	A	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	RDH5-91	NM_001199771	exon5	c.A798T	p.R266R	GAGCCGATGCCTG	.	137	36	162	1	.	431	298	133	0	0
NACA	4666	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	57114205	57114205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	NACA-254	NM_001113203	exon3	c.C1109T	p.T370I	GCCACAGTAGCAG	.	46	27	42	0	.	0	0	0	0	0
MBD6	114785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57918527	57918527	+	Silent	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MBD6-516	NM_052897	exon4	c.C138A	p.S46S	GTCTTCCTTGGAG	.	132	45	106	0	.	15	12	3	0	0
WDR66	144406	broad.mit.edu	37	12	122398516	122398516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	WDR66-92	NM_001178003	exon14	c.A2159G	p.Y720C	CTGTTTACATGCT	.	194	3	143	0	.	3	2	0	1	0
MIR668	768214	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	101521660	101521660	+	RNA	SNP	C	C	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	.	.	.	.	.	CACTACCCAATAC	.	80	22	66	0	.	0	0	0	0	0
THBS1	7057	hgsc.bcm.edu	37	15	39880743	39880743	+	Silent	SNP	T	T	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	THBS1-653	NM_003246	exon10	c.T1488G	p.G496G	CTGGGGTCCTTGG	.	95	5	65	2	.	1	1	0	0	0
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43299382	43299382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	UBR1-91	NM_174916	exon30	c.G3310A	p.E1104K	CCTGTTCTTCTTG	.	137	49	121	0	.	0	0	0	0	0
SPG11	80208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44951365	44951365	+	Silent	SNP	A	A	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SPG11-95	NM_025137	exon3	c.T579A	p.L193L	CAAGGGAAGTGTG	.	155	56	144	1	.	0	0	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2155892	2155892	+	Silent	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	PKD1-91	NM_000296	exon20	c.T7837C	p.L2613L	GGGCCAACGAGTA	.	36	4	44	0	.	3	2	1	0	0
B3GNT9	84752	broad.mit.edu;bcgsc.ca	37	16	67184131	67184131	+	Silent	SNP	G	G	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	.	NM_033309	exon2	c.C258G	p.R86R	CAAATAGCGGGCG	.	17	5	21	0	.	1	0	1	0	0
ZFHX3	463	hgsc.bcm.edu	37	16	72992635	72992635	+	Silent	SNP	T	T	C	rs140202779		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZFHX3-72	NM_006885	exon2	c.A1410G	p.E470E	CGCCTCTTCCTCC	.	36	4	61	0	T|1.000;C|0.000	0	0	0	0	0
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	72992638	72992638	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZFHX3-72	NM_006885	exon2	c.G1407A	p.E469E	CTCTTCCTCCTCC	.	38	9	59	0	.	0	0	0	0	0
OR1E1	8387	broad.mit.edu	37	17	3301701	3301701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	OR1E1-68	NM_003553	exon1	c.A4G	p.M2V	GTCCCATCATGCT	.	264	3	141	0	.	0	0	0	0	0
MYH10	4628	broad.mit.edu	37	17	8416922	8416922	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MYH10-92	NM_001256012	exon23	c.G2679A	p.L893L	CACCTTCAACAGC	.	355	13	186	0	.	4	4	0	0	0
MPRIP	23164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17030034	17030034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MPRIP-90	NM_015134	exon4	c.G286A	p.G96S	CCTCAGGGCACCA	.	127	36	96	0	.	21	13	8	0	0
PHF12	57649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27251080	27251080	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	PHF12-91	NM_020889	exon4	c.A562T	p.I188F	CGTCAATGATGTC	.	89	51	63	0	.	7	4	3	0	0
KRT17	3872	broad.mit.edu	37	17	39777877	39777877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	KRT17-92	NM_000422	exon4	c.C802A	p.R268S	CCTTGCGGTTCTT	.	197	8	153	0	.	0	0	0	0	0
GJC1	10052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42882624	42882624	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	GJC1-248	NM_005497	exon3	c.G562C	p.E188Q	CCACCTCAAACAC	.	358	131	219	0	.	0	0	0	0	0
SAMD14	201191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48190273	48190273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SAMD14-68	NM_174920	exon11	c.A1322C	p.E441A	TTGGCCTCCTGCT	.	133	51	102	0	.	78	34	44	0	0
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48669448	48669448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	CACNA1G-67	NM_001256360	exon13	c.G2905A	p.A969T	TTCCAGGCGGAGG	.	96	40	59	0	.	0	0	0	0	0
VEZF1	7716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56060465	56060465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	VEZF1-136	NM_007146	exon2	c.C323A	p.T108N	GTGGGGGTTTTCT	.	146	61	131	1	.	1	1	0	0	0
DYM	54808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	46645145	46645145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	DYM-226	NM_017653	exon15	c.C1715T	p.S572L	TGAAATGAAGGAT	.	70	22	63	0	.	5	2	3	0	0
TMPRSS9	360200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2408353	2408353	+	Splice_Site	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TMPRSS9-91	NM_182973	exon7	c.741-1G>A	.	CCTGCAGGTTCCA	.	59	7	61	0	.	0	0	0	0	0
SSBP4	170463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18538728	18538728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SSBP4-90	NM_001009998	exon4	c.G215A	p.C72Y	TGTACTGCGCGGC	.	107	40	163	0	.	43	25	18	0	0
SLC25A42	284439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19218750	19218750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SLC25A42-90	NM_178526	exon7	c.G545T	p.G182V	AAGAGGGGCTGAA	.	134	51	139	0	.	8	1	7	0	0
ZNF254	9534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	24310237	24310237	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZNF254-90	NM_203282	exon4	c.A1435T	p.R479X	CTAACTAGACATA	.	74	21	107	0	.	3	0	3	0	0
SPINT2	10653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38774304	38774304	+	Silent	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SPINT2-90	NM_021102	exon2	c.G144T	p.R48R	ATGCCGGGCCTCC	.	208	55	211	0	.	73	37	36	0	0
CYP2S1	29785	broad.mit.edu	37	19	41712375	41712375	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	CYP2S1-91	NM_030622	exon9	c.C1497T	p.S499S	TCACTCCACCACG	.	95	8	133	0	.	0	0	0	0	0
ZNF471	57573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57037032	57037032	+	Silent	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZNF471-154	NM_020813	exon5	c.A1596G	p.Q532Q	TGCCCAACATCAG	.	121	40	152	0	.	0	0	0	0	0
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	9645412	9645412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ADAM17-659	NM_003183	exon12	c.A1427C	p.K476T	CAAACTTTATTGC	.	154	72	120	0	.	1	0	1	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	21260848	21260848	+	Silent	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	APOB-175	NM_000384	exon5	c.C519T	p.A173A	TTGCTTGGCTTCT	.	173	94	140	0	.	0	0	0	0	0
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24051776	24051776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ATAD2B-68	NM_001242338	exon15	c.G1762T	p.D588Y	TCCAGTCCCTGGT	.	138	59	97	0	.	0	0	0	0	0
AGBL5	60509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27291539	27291539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	AGBL5-154	NM_021831	exon13	c.A2282G	p.E761G	AACCAGAGGCTGT	.	180	52	117	0	.	20	12	8	0	0
PAX8	7849	bcgsc.ca	37	2	113984805	113984805	+	Missense_Mutation	SNP	G	G	A	rs189229644		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	PAX8-684	NM_013952	exon10	c.C1037T	p.P346L	GTATCCGGGCAGC	.	32	9	15	0	G|0.999;A|0.001	122	69	53	0	0
PKP4	8502	bcgsc.ca	37	2	159490676	159490676	+	Silent	SNP	G	G	T	rs200605632	alternate_allele	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	PKP4-97	NM_001005476	exon9	c.G1437T	p.A479A	CTACGCGGAGCCC	.	280	12	223	1	G|0.999;A|0.000	4	4	0	0	0
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	218713795	218713795	+	Missense_Mutation	SNP	G	G	A	rs200862766		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TNS1-156	NM_022648	exon17	c.C1070T	p.T357M	CCCTGCGTGTGTC	.	198	38	189	0	G|0.999;A|0.001	1	1	0	0	0
UGT1A5	54579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234622277	234622277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	UGT1A5-3	NM_019078	exon1	c.A640G	p.M214V	AAGAACATGCTCT	.	368	195	352	1	.	0	0	0	0	0
RALGAPA2	57186	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	20491913	20491913	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	RALGAPA2-24	NM_020343	exon33	c.T4913A	p.L1638X	GAGTCCAAATTTT	.	24	11	18	0	.	1	0	1	0	0
SSTR4	6754	broad.mit.edu	37	20	23017198	23017198	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SSTR4-522	NM_001052	exon1	c.A1078T	p.M360L	GGGTGCATGTGCC	.	108	6	108	0	.	0	0	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29628283	29628283	+	RNA	SNP	G	G	C	rs200164543		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	FRG1B-22	.	.	.	.	AGCAGGGGACATA	.	144	6	79	1	.	33	33	0	0	0
BPIFA2	140683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31761923	31761923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	.	NM_080574	exon4	c.C341T	p.A114V	TCAAAGCTGAACC	.	136	38	119	0	.	0	0	0	0	0
MX1	4599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	42807881	42807881	+	Missense_Mutation	SNP	G	G	A	rs150271063		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MX1-515	NM_001144925	exon8	c.G223A	p.V75I	ATCGCCGTCATCG	.	101	40	132	0	G|1.000;A|0.000	4	4	0	0	0
BCR	613	ucsc.edu	37	22	23656859	23656859	+	Silent	SNP	T	T	A	rs55715766	byfrequency;alternate_allele	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	BCR-1349	NM_004327	exon22	c.T3684A	p.P1228P	CCAGCCTATCACC	.	39	4	38	0	T|0.999;C|0.001	104	104	0	0	0
SYNPR	132204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	63466530	63466530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	.	NM_001130003	exon3	c.C107T	p.A36V	CATTTGCAACATG	.	239	94	280	1	.	0	0	0	0	0
ROBO2	6092	broad.mit.edu;bcgsc.ca	37	3	77542437	77542437	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ROBO2-328	NM_002942	exon5	c.T710G	p.L237R	TGGTACTGGAGGA	.	96	6	93	0	.	0	0	0	0	0
PLOD2	5352	broad.mit.edu	37	3	145806381	145806381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	PLOD2-92	NM_182943	exon9	c.C997T	p.H333Y	TGTTATGAATAAA	.	30	8	37	0	.	0	0	0	0	0
P2RY1	5028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	152553966	152553966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	P2RY1-500	NM_002563	exon1	c.A395G	p.H132R	TCTTTCATGTGAA	.	100	34	85	0	.	0	0	0	0	0
SH3TC1	54436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8230107	8230107	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SH3TC1-154	NM_018986	exon12	c.C2686T	p.L896L	CGGGACCTGGGCC	.	116	57	102	0	.	11	4	7	0	0
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	169317122	169317122	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	DDX60L-69	NM_001012967	exon27	c.G3645A	p.R1215R	TTTATTCCTGGTA	.	139	72	93	1	.	0	0	0	0	0
WDR70	55100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37381726	37381726	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	WDR70-187	NM_018034	exon3	c.C114T	p.D38D	ATTTGACTTGGAA	.	220	71	166	0	.	1	1	0	0	0
TUBE1	51175	hgsc.bcm.edu	37	6	112408628	112408628	+	Missense_Mutation	SNP	A	A	C	rs199513778		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TUBE1-91	NM_016262	exon1	c.T10G	p.S4A	CCACCGACTGGGT	.	3	2	1	1	.	0	0	0	0	0
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48506568	48506568	+	Silent	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ABCA13-521	NM_152701	exon44	c.C12831T	p.N4277N	CGACAACTTGGAC	.	237	82	144	2	.	0	0	0	0	0
ZNF680	340252	broad.mit.edu	37	7	63982808	63982808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZNF680-91	NM_178558	exon4	c.A324G	p.I108M	TCTCAGTATCACT	.	136	5	75	0	.	1	1	0	0	0
SLC13A1	6561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	122765636	122765636	+	Silent	SNP	A	A	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SLC13A1-92	NM_022444	exon11	c.T1227C	p.P409P	TCCTGTAGGTGTA	.	384	147	192	0	.	0	0	0	0	0
AKR1B15	441282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	134260255	134260255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	AKR1B15-23	NM_001080538	exon7	c.G597T	p.L199F	GCTCTTGAACAAA	.	265	97	164	0	.	0	0	0	0	0
OXR1	55074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	107718929	107718929	+	Silent	SNP	T	T	C	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	OXR1-68	NM_001198532	exon8	c.T1183C	p.L395L	GGTCACTTAAGAT	.	71	19	63	0	.	1	1	0	0	0
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	139737673	139737673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	COL22A1-103	NM_152888	exon24	c.G2150A	p.G717E	GGGGGTCCTGGAG	.	127	44	131	0	.	0	0	0	0	0
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139371469	139371469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	.	NM_014866	exon3	c.C599T	p.A200V	GGGGATGCTGCTG	.	63	30	80	1	.	0	0	0	0	0
ATP2A1	487	broad.mit.edu	37	16	28913640	28913640	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ATP2A1-93	NM_004320	exon17	c.2457delC	p.R819fs	GGACCGCCCCCCC	.	129	7	183	0	.	0	0	0	0	0
ZFHX3	463	broad.mit.edu	37	16	72992645	72992647	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZFHX3-72	NM_006885	exon2	c.1398_1400del	p.466_467del	TCCTCCTCTTCCT	.	38	7	55	0	.	0	0	0	0	0
USHBP1	83878	hgsc.bcm.edu;bcgsc.ca	37	19	17370111	17370111	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	USHBP1-91	NM_031941	exon7	c.1033delG	p.A345fs	.	.	41	12	50	0	.	0	0	0	0	0
ITSN2	50618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	24509153	24509155	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ITSN2-539	NM_147152	exon16	c.1789_1791del	p.597_597del	.	.	120	24	67	0	.	0	0	0	0	0
NDUFS1	4719	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	207006722	207006724	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	NDUFS1-91	NM_001199984	exon12	c.1245_1247del	p.415_416del	.	.	138	21	101	0	.	0	0	0	0	0
LRRFIP1	9208	broad.mit.edu	37	2	238672176	238672176	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	LRRFIP1-153	NM_001137552	exon11	c.1820delA	p.E607fs	TTAAGGAAGAAGA	.	43	7	26	0	.	0	0	0	0	0
MGAM	8972	broad.mit.edu	37	7	141794622	141794622	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MGAM-70	NM_004668	exon40	c.4729delT	p.F1577fs	GGGGCCTTTTACC	.	134	7	66	0	.	0	0	0	0	0
TPD52	7163	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	80963849	80963851	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TPD52-523	NM_001025252	exon4	c.417_419del	p.139_140del	.	.	75	26	74	0	.	0	0	0	0	0
ZNF658	26149	broad.mit.edu	37	9	40772391	40772392	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZNF658-45	NM_033160	exon5	c.2883_2884del	p.961_962del	TCTCCCCTGTGTG	.	245	8	345	0	.	0	0	0	0	0
MYCN	4613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	16082320	16082321	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MYCN-1271	NM_005378	exon2	c.134_135insG	p.P45fs	.	.	49	23	47	0	.	0	0	0	0	0
UBR3	130507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	170843280	170843281	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	UBR3-68	NM_172070	exon25	c.3760_3761insT	p.V1254fs	.	.	136	32	85	0	.	0	0	0	0	0
TOPBP1	11073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	133329894	133329895	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TOPBP1-540	NM_007027	exon25	c.4127_4128insAG	p.R1376fs	.	.	249	88	230	0	.	0	0	0	0	0
LAP3	51056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	17586652	17586653	+	Missense_Mutation	DNP	AC	AC	GA	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	LAP3		exon6	c.C598A	p.R200S	TTGGCACGCCAAT	.	91.0	24.0	69.0	1.0	.	0	0	0	0	0
NDFIP1	80762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141524143	141524144	+	Missense_Mutation	DNP	CC	CC	AG	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	NDFIP1		exon7	c.C571G	p.L191V	TTTCTCCTGTTTC	.	207.0	51.0	194.0	1.0	.	0	0	0	0	0