Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 LOC440563 0 broad.mit.edu;bcgsc.ca 37 1 13183399 13183399 + Silent SNP A A G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . . NM_001136561 exon2 c.T474C p.S158S GAAGCCACTTTTG . 873 80 1035 1 . 1171 1169 2 0 0 C1orf64 149563 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 16332451 16332451 + Silent SNP G G C novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . C1orf64-153 NM_178840 exon2 c.G120C p.T40T CCCCACGGCTCAC . 454 126 555 2 . 0 0 0 0 0 JAK1 3716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 65330541 65330541 + Missense_Mutation SNP A A T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . JAK1-3900 NM_002227 exon8 c.T1105A p.F369I CAGGGAAGTAAGA . 68 22 74 0 . 90 53 37 0 0 SLC6A17 388662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 110738291 110738291 + Missense_Mutation SNP T T A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . SLC6A17-92 NM_001010898 exon10 c.T1576A p.Y526N GATGACTACTCGG . 75 32 73 0 . 0 0 0 0 0 SIKE1 80143 hgsc.bcm.edu;bcgsc.ca 37 1 115323170 115323170 + Missense_Mutation SNP C C A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . SIKE1-227 NM_001102396 exon1 c.G59T p.R20L TGCTCCCGTAGCC . 57 5 53 0 . 8 8 0 0 0 FCGR1A 2209 hgsc.bcm.edu 37 1 149755582 149755582 + Missense_Mutation SNP T T G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . FCGR1A-23 NM_000566 exon3 c.T76G p.L26V ATCACTTTGCAGC . 249 40 230 0 . 6 6 0 0 0 TRIM46 80128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 155148034 155148034 + Missense_Mutation SNP C C G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . TRIM46-228 NM_025058 exon2 c.C236G p.S79C CCACCTCTCCTGC . 97 19 118 0 . 0 0 0 0 0 JMJD1C 221037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 64968980 64968980 + Missense_Mutation SNP A A T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . JMJD1C-275 NM_032776 exon9 c.T2710A p.W904R GTAGCCAAGGACT . 46 19 57 0 . 10 5 5 0 0 LRRC4C 57689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 40136275 40136275 + Missense_Mutation SNP A A C novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . LRRC4C-521 NM_001258419 exon7 c.T1568G p.M523R GTCTTCATGACCT . 109 29 129 0 . 0 0 0 0 0 ACCS 84680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 44105011 44105011 + Missense_Mutation SNP T T C novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . ACCS-155 NM_032592 exon14 c.T1292C p.L431P TGCTGCTCTGGCG . 68 13 62 0 . 33 17 16 0 0 AHNAK 79026 broad.mit.edu 37 11 62288080 62288080 + Missense_Mutation SNP T T G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . AHNAK-109 NM_001620 exon5 c.A13809C p.K4603N TGGACCTTTCAGA . 185 5 183 1 . 172 172 0 0 0 MLL2 8085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 49434235 49434235 + Missense_Mutation SNP C C T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . MLL2-612 NM_003482 exon31 c.G7318A p.V2440I GGGTAACGGGTGA . 101 35 96 0 . 3 3 0 0 0 RDH5 5959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 56115126 56115126 + Missense_Mutation SNP T T C novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . RDH5-91 NM_001199771 exon2 c.T158C p.F53S GAGGCTTCCGAGT . 102 29 120 1 . 45 25 20 0 0 AGAP2 116986 broad.mit.edu;bcgsc.ca 37 12 58120789 58120789 + Missense_Mutation SNP C C T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . AGAP2-716 NM_001122772 exon18 c.G3304A p.A1102T CGTGGGCGAGCTC . 21 6 25 0 . 4 1 3 0 0 HNF1A 6927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 121437343 121437343 + Nonsense_Mutation SNP C C T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . HNF1A-1745 NM_000545 exon9 c.C1681T p.Q561X GCATCTCAGGCCA . 37 10 42 0 . 57 46 11 0 0 HMGB1 3146 broad.mit.edu 37 13 31035512 31035512 + Missense_Mutation SNP T T A rs79036453 TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . HMGB1-227 NM_002128 exon5 c.A630T p.E210D ATCATCTTCTTCT . 63 4 58 1 T|0.500;A|0.500 550 549 0 1 0 CCDC70 83446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 52439743 52439743 + Missense_Mutation SNP C C T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . CCDC70-90 NM_031290 exon2 c.C229T p.H77Y AAGATCCATGCTT . 127 59 95 0 . 0 0 0 0 0 PCDH8 5100 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 53418949 53418949 + Missense_Mutation SNP A A T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . PCDH8-153 NM_002590 exon3 c.T2959A p.F987I TACAGAAGGTTGA . 112 48 122 0 . 0 0 0 0 0 KTN1 3895 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 56107681 56107681 + Nonsense_Mutation SNP C C T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . KTN1-1147 NM_004986 exon16 c.C2014T p.Q672X AAGATGCAACAAA . 55 17 46 0 . 0 0 0 0 0 ITGA11 22801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 68631978 68631978 + Missense_Mutation SNP C C G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . ITGA11-538 NM_001004439 exon11 c.G1136C p.G379A AGAACCCCATCCT . 84 19 100 0 . 0 0 0 0 0 SCAPER 49855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 76673781 76673781 + Missense_Mutation SNP C C T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . SCAPER-137 NM_020843 exon27 c.G3643A p.V1215M TGGCCACTTGGAT . 50 11 59 0 . 15 10 5 0 0 XYLT1 64131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 17252766 17252766 + Missense_Mutation SNP C C G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . XYLT1-94 NM_022166 exon6 c.G1290C p.R430S ATTTGTCCTGTGG . 121 65 85 1 . 0 0 0 0 0 DCUN1D3 123879 broad.mit.edu 37 16 20871518 20871518 + Missense_Mutation SNP C C A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . DCUN1D3-92 NM_173475 exon3 c.G605T p.R202L ATTTCCCGATGCA . 371 7 252 0 . 11 11 0 0 0 MYH13 8735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 10227379 10227379 + Nonsense_Mutation SNP A A T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . MYH13-6 NM_003802 exon23 c.T2894A p.L965X TTCGTCAAGGTCA . 105 68 70 0 . 0 0 0 0 0 MYH8 4626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 10309460 10309460 + Missense_Mutation SNP T T C novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . MYH8-101 NM_002472 exon21 c.A2330G p.E777G ATTTCTTCCAGAA . 101 54 90 0 . 0 0 0 0 0 TVP23C 201158 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA . 573 78 346 54 . 109 15 94 0 0 STAC2 342667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 37368584 37368584 + Silent SNP C C T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . STAC2-91 NM_198993 exon11 c.G1197A p.K399K GCCCCGCTTCTTG . 60 14 35 0 . 1 1 0 0 0 KRTAP4-11 653240 broad.mit.edu 37 17 39274087 39274087 + Missense_Mutation SNP G G C rs80322557 TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . . NM_033059 exon1 c.C481G p.L161V GACGCAGGCAGCA . 48 8 26 0 G|0.500;C|0.500 0 0 0 0 0 ITGB4 3691 hgsc.bcm.edu 37 17 73750000 73750000 + Silent SNP C C G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . ITGB4-227 NM_000213 exon33 c.C4263G p.G1421G CGGCGGCGCGGGC . 4 2 0 0 . 0 0 0 0 0 C19orf21 126353 broad.mit.edu 37 19 757398 757398 + Missense_Mutation SNP C C A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . C19orf21-91 NM_173481 exon2 c.C452A p.A151E GCCAGGCAGTCAG . 18 7 21 0 . 42 28 14 0 0 CAPS 828 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 5914495 5914495 + Silent SNP G G T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . CAPS-90 NM_080590 exon2 c.G78T p.L26L GGGCCTGGCCAGG . 57 22 72 0 . 0 0 0 0 0 C3 718 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 6709834 6709834 + Missense_Mutation SNP T T G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . C3-95 NM_000064 exon14 c.A1706C p.Q569P TCTGACTGGCCGC . 72 18 101 1 . 176 6 170 0 0 FCER2 2208 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 7755293 7755293 + Missense_Mutation SNP T T A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . FCER2-130 NM_002002 exon9 c.A620T p.Q207L CCCACCTGCTCCT . 92 27 105 0 . 0 0 0 0 0 SMARCA4 6597 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 11113781 11113781 + Missense_Mutation SNP G G C novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . SMARCA4-1523 NM_003072 exon12 c.G1889C p.G630A TCACAGGCACAGA . 111 28 148 0 . 45 19 26 0 0 MAU2 23383 broad.mit.edu;bcgsc.ca 37 19 19431865 19431865 + Missense_Mutation SNP G G T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . MAU2-91 NM_015329 exon1 c.G197T p.R66L AGGCCCGTACACA . 33 10 35 0 . 13 5 8 0 0 RYR1 6261 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 38990577 38990577 + Missense_Mutation SNP G G A rs201584482 TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . RYR1-100 NM_001042723 exon45 c.G7244A p.R2415Q AAAACCGGGTGCA . 105 35 109 0 . 0 0 0 0 0 MYH14 79784 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 50764757 50764757 + Missense_Mutation SNP A A G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . MYH14-23 NM_001145809 exon21 c.A2450G p.N817S ACCCCAACCTCTA . 74 20 85 0 . 53 22 31 0 0 NLRP8 126205 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 56459545 56459545 + Missense_Mutation SNP C C A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . NLRP8-361 NM_176811 exon1 c.C277A p.P93T CGTTTCCCTGGAC . 37 9 49 0 . 0 0 0 0 0 ZBTB45 84878 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 59027831 59027831 + Missense_Mutation SNP C C G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . ZBTB45-90 NM_032792 exon2 c.G1210C p.E404Q TGCACTCATACGT . 52 14 43 1 . 19 15 4 0 0 GRHL1 29841 broad.mit.edu;bcgsc.ca 37 2 10130855 10130855 + Missense_Mutation SNP G G A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . GRHL1-92 NM_198182 exon10 c.G1301A p.R434Q AAGAACGAAAGCA . 29 9 34 0 . 8 7 1 0 0 GREB1 9687 hgsc.bcm.edu;broad.mit.edu 37 2 11758729 11758729 + Missense_Mutation SNP A A G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . GREB1-91 NM_014668 exon22 c.A3728G p.Q1243R TCCTGCAGGCCTC . 54 3 42 0 . 11 11 0 0 0 NBAS 51594 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 15691634 15691634 + Missense_Mutation SNP A A G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . NBAS-94 NM_015909 exon6 c.T362C p.I121T CCAATAATGGATG . 20 6 16 0 . 9 9 0 0 0 LTBP1 4052 hgsc.bcm.edu 37 2 33172879 33172879 + Missense_Mutation SNP T T C rs62135680 TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . LTBP1-230 NM_206943 exon1 c.T488C p.L163P AGCAGCTGCAGGG . 21 10 11 1 T|0.992;C|0.008 0 0 0 0 0 SMEK2 57223 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 55812212 55812212 + Missense_Mutation SNP A A G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . SMEK2-228 NM_001122964 exon7 c.T1208C p.M403T TCTTGCATTACAA . 134 29 77 0 . 59 33 26 0 0 GAD1 2571 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 171687570 171687570 + Silent SNP C C T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . GAD1-91 NM_000817 exon5 c.C415T p.L139L AAGGTGCTGGACT . 128 63 137 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 179419674 179419674 + Silent SNP A A G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . TTN-636 NM_001267550 exon331 c.T88512C p.D29504D AAGGCGATCGGCA . 64 37 50 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 179650834 179650834 + Missense_Mutation SNP G G C novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . TTN-636 NM_001267550 exon14 c.C2111G p.T704R ACAACTGTTGCTA . 110 56 66 0 . 0 0 0 0 0 ZNF804A 91752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 185801068 185801068 + Silent SNP A A G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . ZNF804A-163 NM_194250 exon4 c.A945G p.Q315Q GTTTCAACTTCAG . 67 41 47 0 . 0 0 0 0 0 RUFY4 285180 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 218938568 218938568 + Missense_Mutation SNP A A T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . RUFY4-46 NM_198483 exon8 c.A560T p.Q187L AAACCCAGGGAAG . 66 11 58 0 . 0 0 0 0 0 COL6A3 1293 broad.mit.edu 37 2 238277277 238277277 + Missense_Mutation SNP A A G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . COL6A3-526 NM_004369 exon10 c.T4829C p.M1610T GAGTTCATGATTC . 190 6 161 1 . 5 5 0 0 0 CEP250 11190 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 34092361 34092361 + Missense_Mutation SNP A A G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . CEP250-27 NM_007186 exon30 c.A6164G p.Q2055R ATCAGCAGGAACG . 52 17 29 0 . 7 6 1 0 0 EPB41L1 2036 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 34778270 34778270 + Silent SNP C C A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . EPB41L1-93 NM_001258329 exon11 c.C1098A p.V366V GAAGGTCTGCATC . 47 10 46 0 . 37 22 15 0 0 TMEM189-UBE2V1 387522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 48713266 48713266 + Silent SNP T T C novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . TMEM189-UBE2V1-454 NM_199203 exon6 c.A783G p.E261E GTCATCTTCTAGA . 196 58 210 2 . 60 39 21 0 0 ADNP 23394 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 49510230 49510230 + Missense_Mutation SNP A A T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . ADNP-92 NM_015339 exon5 c.T1021A p.Y341N CACTGTAACCCTG . 98 31 114 0 . 22 13 9 0 0 ADARB1 104 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 46596347 46596347 + Missense_Mutation SNP G G A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . ADARB1-91 NM_001160230 exon4 c.G731A p.R244H AACTGCGCCCAGG . 122 44 117 0 . 5 5 0 0 0 CRKL 1399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 21272259 21272259 + Missense_Mutation SNP G G C novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . CRKL-439 NM_005207 exon1 c.G37C p.A13P CGCTCCGCCTGGT . 60 13 60 1 . 19 8 11 0 0 APOL4 80832 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 36595420 36595420 + Missense_Mutation SNP A A G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . APOL4-90 . . . . TGCTGCACCCTTG . 152 44 162 0 . 0 0 0 0 0 PODXL2 50512 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 127379599 127379599 + Nonsense_Mutation SNP T T A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . PODXL2-91 NM_015720 exon3 c.T728A p.L243X CCAGCTTGCTGCT . 88 18 95 0 . 1 1 0 0 0 XRN1 54464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 142123863 142123863 + Missense_Mutation SNP C C G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . XRN1-93 NM_001042604 exon16 c.G1769C p.R590T CTTTTCCTCTCTT . 82 35 76 0 . 9 3 6 0 0 CHRD 8646 hgsc.bcm.edu 37 3 184098193 184098193 + Silent SNP A A C rs1920128 TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . CHRD-93 NM_003741 exon1 c.A87C p.P29P CGGCCCAGAGCCC . 4 4 0 0 T|0.680;G|0.319 6 0 6 0 0 FRYL 285527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 48578148 48578148 + Missense_Mutation SNP C C T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . FRYL-69 NM_015030 exon24 c.G2620A p.A874T TTGCTGCACTGCA . 97 27 148 0 . 9 9 0 0 0 SHROOM3 57619 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 77675996 77675996 + Missense_Mutation SNP C C A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . SHROOM3-93 NM_020859 exon7 c.C4360A p.L1454M GCAAACCTGAAGC . 57 21 73 0 . 29 13 16 0 0 SLC39A8 64116 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 103225511 103225511 + Missense_Mutation SNP T T C novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . SLC39A8-90 NM_022154 exon5 c.A803G p.H268R TGGATATGTCCAT . 68 23 68 0 . 149 71 78 0 0 ACSL1 2180 broad.mit.edu 37 4 185686012 185686012 + Missense_Mutation SNP G G A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . ACSL1-92 NM_001995 exon15 c.C1427T p.T476I CCTGCGGTCCAGT . 33 9 25 0 . 0 0 0 0 0 IPO11 51194 ucsc.edu 37 5 61897615 61897615 + Missense_Mutation SNP G G T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . IPO11-227 NM_001134779 exon29 c.G2823T p.E941D TCTTGAGGAACCA . 32 5 49 0 . 12 12 0 0 0 CTNNA1 1495 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 138266342 138266342 + Nonsense_Mutation SNP C C T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . CTNNA1-671 NM_001903 exon15 c.C2191T p.R731X TTTACCCGGTGAG . 195 75 191 0 . 0 0 0 0 0 FAM71B 153745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 156590094 156590094 + Silent SNP T T A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . FAM71B-96 NM_130899 exon2 c.A1182T p.A394A TCCCACTGCTGGT . 92 36 103 0 . 0 0 0 0 0 HIST1H3A 8350 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 26021008 26021008 + Silent SNP C C T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . HIST1H3A-92 NM_003529 exon1 c.C291T p.C97C GGCGTGCGAGGCC . 57 14 47 0 . 0 0 0 0 0 FTSJD2 23070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 37442389 37442389 + Silent SNP A A G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . FTSJD2-94 NM_015050 exon18 c.A1911G p.L637L TCTGCTATCTGTG . 101 31 109 0 . 37 18 19 0 0 ADCY1 107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 45747951 45747951 + Silent SNP T T C novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . ADCY1-95 NM_021116 exon18 c.T2820C p.A940A CTAGGCTAAGAAG . 104 56 83 0 . 0 0 0 0 0 MLL5 55904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 104717426 104717426 + Missense_Mutation SNP T T G novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . MLL5-93 NM_018682 exon9 c.T785G p.I262S CAGAGATTGATCC . 59 25 41 0 . 13 5 8 0 0 COL14A1 7373 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 121237425 121237425 + Silent SNP A A T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . COL14A1-543 NM_021110 exon15 c.A1836T p.S612S ACAGTCAGAGCCT . 78 20 99 0 . 0 0 0 0 0 WDYHV1 55093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 124448833 124448833 + Missense_Mutation SNP G G T rs201436036 alternate_allele TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . WDYHV1-92 NM_018024 exon4 c.G375T p.Q125H CCCACAGTTTAGG . 78 24 93 1 G|0.999;A|0.000 0 0 0 0 0 WASH1 100287171 hgsc.bcm.edu 37 9 17011 17011 + Silent SNP T T C rs3874689 TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . . NM_182905 exon7 c.A837G p.P279P CAGTTCTGGAATG . 24 5 33 2 . 98 41 57 0 0 CNTLN 54875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 17332674 17332674 + Silent SNP G G A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . CNTLN-91 NM_017738 exon10 c.G1590A p.K530K ACAGAAGCTGAGA . 71 17 69 0 . 3 3 0 0 0 ACO1 48 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 32448942 32448942 + Missense_Mutation SNP A A T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . ACO1-226 NM_002197 exon20 c.A2419T p.N807Y CGCAGTAACCTGG . 74 29 93 0 . 89 52 37 0 0 HNRNPK 3190 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 86585225 86585225 + Nonsense_Mutation SNP T T A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . HNRNPK-227 NM_031262 exon16 c.A1213T p.K405X CACCTTTGCCAAT . 71 24 60 0 . 431 423 8 0 0 SPTLC1 10558 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 94877626 94877626 + Silent SNP A A T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . SPTLC1-154 NM_006415 exon1 c.T27A p.V9V CACCAGAACCCAC . 78 13 93 0 . 49 24 25 0 0 ADAMTS13 11093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 136305491 136305491 + Missense_Mutation SNP G G C novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . ADAMTS13-229 NM_139027 exon16 c.G1813C p.V605L TATGTCGTGGCTG . 77 27 70 0 . 5 3 2 0 0 OFD1 8481 broad.mit.edu 37 X 13754640 13754640 + Missense_Mutation SNP T T C novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . OFD1-108 NM_003611 exon3 c.T155C p.V52A ACCCTGTATTGAG . 156 4 154 0 . 11 11 0 0 0 PNCK 139728 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 152937464 152937464 + Silent SNP A A T novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . PNCK-207 NM_001039582 exon5 c.T534A p.G178G CTCGCCACCCGTC . 21 10 30 0 . 0 0 0 0 0 RC3H1 149041 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 173916659 173916660 + Frame_Shift_Del DEL GT GT - novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 GT GT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . RC3H1-92 NM_172071 exon14 c.2584_2585del p.862_862del . . 130 29 153 0 . 0 0 0 0 0 DBX1 120237 bcgsc.ca 37 11 20177947 20177947 + Frame_Shift_Del DEL G G - novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . DBX1-91 NM_001029865 exon4 c.845delC p.P282fs CTGCCCGGGCCCT . 16 6 31 0 . 0 0 0 0 0 NLK 51701 broad.mit.edu;bcgsc.ca 37 17 26459690 26459690 + Frame_Shift_Del DEL T T - novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . NLK-1403 NM_016231 exon3 c.633delT p.Y211fs TGACTATTTTGAA . 37 9 33 0 . 0 0 0 0 0 GREB1 9687 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 11706688 11706688 + Frame_Shift_Del DEL G G - novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . GREB1-91 NM_148903 exon4 c.360delG p.V120fs . . 135 41 101 0 . 0 0 0 0 0 BPHL 670 broad.mit.edu;bcgsc.ca 37 6 3123907 3123927 + In_Frame_Del DEL GCCAAAGTGGCTGTGAATGGC GCCAAAGTGGCTGTGAATGGC - novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 GCCAAAGTGGCTGTGAATGGC GCCAAAGTGGCTGTGAATGGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . BPHL-90 NM_004332 exon2 c.124_144del p.42_48del ACCTCTGCCAAAG . 112 8 131 0 . 0 0 0 0 0 F5 2153 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 169510915 169510916 + Frame_Shift_Ins INS - - TT novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . F5-157 NM_000130 exon13 c.3413_3414insAA p.M1138fs . . 276 80 289 0 . 0 0 0 0 0 RPL10A 4736 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 35437266 35437267 + Frame_Shift_Ins INS - - A novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . RPL10A-91 NM_007104 exon4 c.270_271insA p.L90fs . . 44 12 52 0 . 0 0 0 0 0 EPSTI1 94240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 43463356 43463357 + Nonsense_Mutation DNP CT CT TA novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 CT CT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . EPSTI1 exon12 c.A970T p.R324* GGTGCCTCGAAAA . 27.0 16.0 47.0 0.0 . 0 0 0 0 0 FRYL 285527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 48578146 48578147 + Missense_Mutation DNP TG TG CT novel TCGA-G7-6790-01A-11D-1961-08 TCGA-G7-6790-10A-01D-1962-08 TG TG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ef807a92-f471-4d93-8ae9-24bbb846feaa 66cbb40f-14b3-40c0-a332-e8a8e21bca11 . FRYL exon24 c.C2621A p.A874E GTTGCTGCACTGC . 99.0 29.0 149.0 1.0 . 0 0 0 0 0