Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SKI	6497	hgsc.bcm.edu	37	1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	rs28384811		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SKI-838	NM_003036	exon1	c.C185G	p.A62G	TGCCGGCGCCGGT	.	6	3	3	2	C|0.953;G|0.047	0	0	0	0	0
SLC2A5	6518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	9097752	9097752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SLC2A5-517	NM_003039	exon12	c.A1399G	p.T467A	TGAACGTCTTGGC	.	181	30	209	0	.	97	97	0	0	0
ALPL	249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	21902288	21902288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ALPL-94	NM_000478	exon10	c.G1060A	p.E354K	GCGGTGGAGATGG	.	186	25	278	0	.	3	3	0	0	0
WASF2	10163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27739179	27739179	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	WASF2-228	NM_006990	exon7	c.T711C	p.C237C	TTCAACACAGCCA	.	128	22	147	0	.	85	55	30	0	0
MACF1	23499	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39888512	39888512	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MACF1-165	NM_012090	exon56	c.C9903T	p.A3301A	CATAGCCAATCAG	.	115	11	116	0	.	43	36	7	0	0
TESK2	10420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45813333	45813333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TESK2-624	NM_007170	exon7	c.C656T	p.S219F	AATGGGGAACCCA	.	175	38	217	0	.	3	3	0	0	0
TMEM69	51249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	46159260	46159260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TMEM69-91	NM_016486	exon3	c.A427G	p.I143V	GGTGGGATCAGAT	.	176	31	196	0	.	48	32	16	0	0
ZFYVE9	9372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52704507	52704507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZFYVE9-230	NM_007324	exon4	c.A1418G	p.Y473C	CAAATTATCTATC	.	176	32	173	0	.	4	3	1	0	0
ZYG11B	79699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53262039	53262039	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZYG11B-94	NM_024646	exon7	c.T1410C	p.A470A	AGTTGCTATCATT	.	71	10	69	0	.	15	9	6	0	0
ODF2L	57489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	86851227	86851227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ODF2L-69	NM_001007022	exon3	c.C160T	p.L54F	CCTTAAGTGTTGC	.	53	12	43	0	.	1	1	0	0	0
ABCA4	24	broad.mit.edu	37	1	94522330	94522330	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ABCA4-162	NM_000350	exon15	c.T2209C	p.L737L	CCAACAAGAACAG	.	14	3	24	0	.	0	0	0	0	0
ARHGAP29	9411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94639942	94639942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ARHGAP29-296	NM_004815	exon23	c.T3269C	p.L1090P	GCAGTTAGGCTGT	.	341	56	428	0	.	182	104	78	0	0
GSTM1	2944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110233169	110233169	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GSTM1-44	NM_000561	exon7	c.T550G	p.F184V	AAGGACTTCATCT	.	240	72	317	0	.	93	77	16	0	0
INSRR	3645	ucsc.edu	37	1	156821562	156821562	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	INSRR-1403	NM_014215	exon4	c.C960T	p.C320C	CCCCTCGCACTTG	.	54	6	48	0	.	0	0	0	0	0
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	160105252	160105252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ATP1A2-518	NM_000702	exon16	c.G2144A	p.G715E	GTGACGGGGTGAA	.	73	12	110	0	.	1	1	0	0	0
USP21	27005	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161134645	161134645	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	USP21-660	NM_012475	exon11	c.T1405A	p.S469T	TCTGCCTCCCGAG	.	96	21	109	0	.	21	13	8	0	0
NME7	29922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169102046	169102046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	NME7-514	NM_013330	exon12	c.T1108C	p.F370L	TGAAGAAGTATTG	.	66	7	71	0	.	1	1	0	0	0
PPFIA4	8497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203036824	203036824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PPFIA4-230	NM_015053	exon13	c.A1534G	p.T512A	TGCAGAACCAGTC	.	67	8	94	0	.	0	0	0	0	0
PIGR	5284	ucsc.edu	37	1	207106513	207106513	+	Splice_Site	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PIGR-92	NM_002644	exon8	c.1706-2A>G	.	GGACCCTGCAGCA	.	39	1	66	0	.	3	3	0	0	0
LRIT1	26103	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	85997318	85997318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LRIT1-90	NM_015613	exon2	c.G247A	p.G83S	GGCGGCCCAGGGG	.	48	10	54	0	.	0	0	0	0	0
ZNF143	7702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	9519250	9519250	+	Silent	SNP	T	T	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF143-90	NM_003442	exon10	c.T870G	p.T290T	CAGAACTCATACA	.	56	8	69	0	.	17	10	7	0	0
RAPSN	5913	ucsc.edu;bcgsc.ca	37	11	47469615	47469615	+	Nonsense_Mutation	SNP	C	C	A	rs200550567	alternate_allele	TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RAPSN-91	NM_032645	exon2	c.G280T	p.E94X	GCTTCTCGTTGCT	.	56	12	70	0	C|0.999;T|0.001	0	0	0	0	0
GIF	2694	hgsc.bcm.edu;bcgsc.ca	37	11	59610049	59610049	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GIF-92	NM_005142	exon4	c.C378G	p.N126K	TTCAGCGTTGGGG	.	58	9	81	1	.	0	0	0	0	0
FADS1	3992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	61578255	61578255	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FADS1-90	NM_013402	exon5	c.T883G	p.F295V	CAAAGAAGAAGGG	.	146	26	218	0	.	14	8	6	0	0
SIDT2	51092	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117052793	117052793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SIDT2-90	NM_001040455	exon4	c.G488A	p.S163N	AGTTCAGCTTCAA	.	28	8	54	0	.	27	22	5	0	0
ARHGEF12	23365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	120302543	120302543	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ARHGEF12-661	NM_015313	exon11	c.A847T	p.T283S	GCAGAAACAGATC	.	63	7	59	0	.	52	27	25	0	0
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2910312	2910312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FKBP4-226	NM_002014	exon9	c.G1062T	p.K354N	CGAGAAGGGCCTC	.	108	30	155	1	.	115	61	54	0	0
STYK1	55359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	10780290	10780290	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	STYK1-1379	NM_018423	exon7	c.C667G	p.L223V	CTGTGAGATCATA	.	77	24	57	0	.	0	0	0	0	0
BCL2L14	79370	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12232370	12232370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	BCL2L14-227	NM_138723	exon2	c.C131T	p.S44L	TCTTCTCACCAAA	.	72	9	98	0	.	0	0	0	0	0
PLEKHA5	54477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	19506893	19506893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PLEKHA5-227	NM_001256470	exon26	c.A3095G	p.Y1032C	CTTCCTATGTAAC	.	112	25	87	0	.	20	8	12	0	0
SLC38A4	55089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	47178364	47178364	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SLC38A4-93	NM_001143824	exon6	c.A454T	p.I152F	CTCCAATTTTTCC	.	175	26	169	0	.	0	0	0	0	0
EIF4B	1975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53416313	53416313	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	EIF4B-568	NM_001417	exon6	c.G569C	p.R190P	GAAATCGGGATTC	.	114	16	105	0	.	555	445	108	2	0
RAB5B	5869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56385887	56385887	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RAB5B-227	NM_002868	exon6	c.A539T	p.K180M	CTAAGAAGTTGCC	.	105	35	86	0	.	1	1	0	0	0
FGD6	55785	broad.mit.edu	37	12	95603626	95603626	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FGD6-137	NM_018351	exon2	c.T1434C	p.P478P	CATTTGAGGGGCA	.	119	3	137	0	.	5	5	0	0	0
CCDC38	120935	hgsc.bcm.edu;broad.mit.edu	37	12	96273432	96273432	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	CCDC38-91	NM_182496	exon12	c.C1132T	p.Q378X	TATCCTGTATAAC	.	100	19	87	0	.	0	0	0	0	0
TRPC4	7223	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	38237841	38237841	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TRPC4-159	NM_003306	exon6	c.C1400A	p.S467X	TCCCATGATTCTC	.	34	7	50	0	.	1	1	0	0	0
RCBTB1	55213	bcgsc.ca	37	13	50115837	50115837	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RCBTB1-91	NM_018191	exon11	c.C1299T	p.V433V	CAGGTCGACTGTG	.	84	17	83	0	.	11	11	0	0	0
GPR180	160897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	95271585	95271585	+	Splice_Site	SNP	G	G	A	rs138676753	alternate_allele	TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GPR180-153	NM_180989	exon4	c.686+1G>A	.	CTCCAGGTAACTC	.	83	9	67	0	G|1.000;C|0.000	0	0	0	0	0
BIVM-ERCC5	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103492131	103492131	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	.	NM_001204425	exon9	c.C1428G	p.D476E	TCAGGACTCGGCA	.	164	30	153	0	.	87	50	37	0	0
KTN1	3895	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	56079010	56079010	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	KTN1-1147	NM_004986	exon2	c.C244A	p.R82R	GTACCTCGAGACT	.	92	19	93	0	.	54	20	34	0	0
ANPEP	290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90349567	90349567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ANPEP-94	NM_001150	exon2	c.A248G	p.D83G	TAGGAATCGGGTT	.	85	18	137	0	.	95	94	1	0	0
SV2B	9899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91769497	91769497	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SV2B-97	NM_014848	exon3	c.G4C	p.D2H	GGAATGGATGACT	.	44	12	47	0	.	1	1	0	0	0
LMF1	64788	hgsc.bcm.edu	37	16	1004476	1004476	+	Missense_Mutation	SNP	C	C	G	rs115313199		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LMF1-90	NM_022773	exon2	c.G384C	p.L128F	AGCCAGCAAGTCC	.	24	6	35	0	C|0.996;G|0.004	31	20	11	0	0
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	24582943	24582943	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RBBP6-230	NM_006910	exon18	c.G4556C	p.R1519T	AAGAGAGAGATTT	.	45	8	42	0	.	24	18	6	0	0
RPGRIP1L	23322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53691402	53691402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RPGRIP1L-91	NM_001127897	exon13	c.T1544C	p.M515T	ATTAGCATGTTTC	.	89	17	57	0	.	5	3	2	0	0
AP2B1	163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33966737	33966737	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	AP2B1-91	NM_001282	exon11	c.A1395C	p.L465F	TGAGTTACTAGAA	.	117	28	97	1	.	131	69	62	0	0
CBX1	10951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	46152378	46152378	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	CBX1-226	NM_006807	exon4	c.C403T	p.L135L	TCATCAGGAACAT	.	268	62	273	0	.	0	0	0	0	0
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56572475	56572475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MTMR4-91	NM_004687	exon16	c.G3028A	p.D1010N	CATCATCCAAATA	.	214	58	205	0	.	12	8	4	0	0
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	57771125	57771125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	CLTC-835	NM_004859	exon32	c.T4940C	p.V1647A	CCAGTGTTGCCGT	.	144	55	151	0	.	293	180	113	0	0
ACE	1636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61570904	61570904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ACE-94	NM_000789	exon20	c.G3020T	p.R1007M	CCTTGAGGGAGGG	.	87	18	86	0	.	24	23	1	0	0
TMC8	147138	broad.mit.edu;bcgsc.ca	37	17	76133812	76133812	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TMC8-90	NM_152468	exon11	c.C1266T	p.S422S	GAACTCCGTGGGG	.	102	14	136	0	.	18	18	0	0	0
DYM	54808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	46956680	46956680	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DYM-226	NM_017653	exon2	c.A85C	p.N29H	GGTCATTCTCAGA	.	171	29	169	0	.	18	12	6	0	0
SERPINB2	5055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61562567	61562567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SERPINB2-226	NM_002575	exon3	c.G238T	p.G80W	AGCTGTGGGTTCA	.	205	35	231	1	.	0	0	0	0	0
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	156	2	111	3	.	0	0	0	0	0
ZNF699	374879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9406673	9406673	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF699-68	NM_198535	exon5	c.C1407G	p.H469Q	TCCAGTGTGATCT	.	55	8	57	0	.	5	4	1	0	0
ICAM5	7087	ucsc.edu	37	19	10402464	10402464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ICAM5-153	NM_003259	exon3	c.C652A	p.P218T	TCGGCCCCCAGAG	.	42	6	89	1	.	0	0	0	0	0
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18274091	18274091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PIK3R2-1311	NM_005027	exon11	c.G1309A	p.D437N	AAGGAGGACAGCG	.	75	13	135	0	.	111	65	46	0	0
ZNF85	7639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	21132080	21132080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF85-514	NM_001256171	exon5	c.G850A	p.G284R	CATACTGGAGAGA	.	33	8	53	0	.	100	91	9	0	0
ZNF85	7639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	21132138	21132138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF85-514	NM_001256171	exon5	c.T908C	p.L303P	CAACTCTTACTAC	.	32	4	59	0	.	1	1	0	0	0
LGI4	163175	broad.mit.edu;ucsc.edu	37	19	35617765	35617765	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LGI4-91	NM_139284	exon7	c.A785T	p.E262V	GGCAGCTCTTCCT	.	31	5	23	0	.	0	0	0	0	0
SUPT5H	6829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39964723	39964723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SUPT5H-94	NM_003169	exon25	c.C2613A	p.N871K	GGTCAACCCACAA	.	66	11	121	0	.	144	103	41	0	0
LGALS13	29124	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40095901	40095901	+	Missense_Mutation	SNP	G	G	T	rs138148689		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LGALS13-91	NM_013268	exon3	c.G176T	p.G59V	ACTTTGGCAATCA	.	77	14	86	0	G|1.000;T|0.000	0	0	0	0	0
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42907053	42907053	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LIPE-154	NM_005357	exon9	c.C2673T	p.T891T	CTCGGGGGTGTCC	.	88	21	121	1	.	2	2	0	0	0
ZNF223	7766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44570872	44570872	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF223-91	NM_013361	exon5	c.C891T	p.F297F	GAGCTTCCGTCTT	.	107	15	148	0	.	5	1	4	0	0
PIH1D1	55011	broad.mit.edu	37	19	49950353	49950353	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PIH1D1-90	NM_017916	exon7	c.T615C	p.P205P	CTTTTCAGGCCTG	.	93	4	127	0	.	0	0	0	0	0
FCGRT	2217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50017313	50017313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FCGRT-91	NM_001136019	exon3	c.A248G	p.Y83C	CCTGGTATTGGGA	.	49	19	63	0	.	388	331	56	1	0
ZNF473	25888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50549983	50549983	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF473-91	NM_015428	exon5	c.G2283C	p.Q761H	TTGTCAGGAATGC	.	111	26	136	0	.	6	4	2	0	0
TTYH1	57348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54937848	54937848	+	Splice_Site	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TTYH1-90	NM_001005367	exon5	c.639-2A>G	.	CCTCCCAGGTGGC	.	116	21	162	1	.	0	0	0	0	0
KIR2DL4	3805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	55324637	55324637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	KIR2DL4-70	NM_001080772	exon6	c.C764T	p.T255I	TCTTTACCATCCT	.	63	25	57	0	.	0	0	0	0	0
ANAPC1	64682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	112608404	112608404	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ANAPC1-228	NM_022662	exon14	c.T1599C	p.D533D	AACGCCATCTAGT	.	131	28	118	0	.	16	11	5	0	0
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141762906	141762906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LRP1B-311	NM_018557	exon15	c.C2501A	p.T834K	TTACATGTGCAAG	.	66	14	55	0	.	0	0	0	0	0
FAP	2191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	163074641	163074641	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FAP-93	NM_004460	exon9	c.T617A	p.L206H	GTAGCAAGCATTT	.	97	14	75	0	.	0	0	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	EEF1B2-227	NM_021121	exon3	c.A127G	p.S43G	GTGTCCAGCCCAC	.	129	4	121	0	.	1026	1022	2	2	0
TNS1	7145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218678433	218678433	+	Silent	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TNS1-156	NM_022648	exon26	c.A4524T	p.P1508P	GATGGTTGGAGGT	.	92	10	131	0	.	112	83	29	0	0
FAM134A	79137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220047044	220047044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FAM134A-91	NM_024293	exon9	c.T1325C	p.L442P	GTGGCCTCACTGC	.	183	40	251	1	.	199	138	61	0	0
GMPPA	29926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220370077	220370077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GMPPA-90	NM_205847	exon8	c.T748C	p.S250P	ATCAAGTCCGCAG	.	120	22	142	0	.	1	1	0	0	0
STAU1	6780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47741019	47741019	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	STAU1-230	NM_017453	exon7	c.A715T	p.K239X	CATTTTTCTTTGA	.	268	78	248	0	.	71	67	4	0	0
SMDT1	0	ucsc.edu	37	22	42475836	42475836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	.	NM_033318	exon1	c.G64A	p.G22R	CGGAGCGGGCCTA	.	74	4	102	0	.	103	91	12	0	0
CAMK1	8536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9801228	9801228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	CAMK1-335	NM_003656	exon10	c.A856G	p.I286V	GGTGGATATTCTT	.	204	42	250	0	.	78	57	21	0	0
GPD1L	23171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	32169609	32169609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GPD1L-90	NM_015141	exon2	c.A89C	p.K30T	TCAAGAAACTTCA	.	49	9	50	0	.	7	3	4	0	0
NXPE3	91775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	101540473	101540473	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	.	NM_145037	exon8	c.C1355G	p.P452R	CCTTCCCTTTGGA	.	64	11	85	0	.	28	20	8	0	0
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121260288	121260288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	POLQ-664	NM_199420	exon3	c.C382T	p.L128F	AAATAAGTAATTC	.	448	78	380	0	.	0	0	0	0	0
DNAJC13	23317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132207161	132207161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DNAJC13-272	NM_015268	exon30	c.C3287A	p.P1096H	TTGACCCTATCCT	.	69	14	67	0	.	23	14	9	0	0
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142284995	142284995	+	Missense_Mutation	SNP	C	C	T	rs200407265	alternate_allele	TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ATR-1139	NM_001184	exon3	c.G260A	p.S87N	CTTCCACTCACAT	.	111	23	98	0	C|0.999;A|0.000	10	4	6	0	0
WDR1	9948	ucsc.edu	37	4	10090323	10090323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	WDR1-48	NM_017491	exon6	c.G601T	p.G201W	TGTTCCCATCAGG	.	23	2	21	0	.	273	207	66	0	0
BOD1L1	259282	broad.mit.edu	37	4	13603393	13603393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	.	NM_148894	exon10	c.C5131A	p.Q1711K	TTCCCTGGGAGCC	.	309	10	277	0	.	14	14	0	0	0
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	40122682	40122682	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	N4BP2-602	NM_018177	exon9	c.C2951G	p.P984R	GTGCACCAACTGT	.	58	9	70	0	.	0	0	0	0	0
SCD5	79966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	83557889	83557889	+	Silent	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SCD5-91	NM_001037582	exon4	c.C657G	p.S219S	GAAGTAGGAATTC	.	45	9	85	0	.	13	7	6	0	0
DMP1	1758	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	88584223	88584223	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DMP1-132	NM_004407	exon6	c.G1293A	p.E431E	CCAGGAGGGCCTC	.	50	11	69	0	.	0	0	0	0	0
ABCG2	9429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89034494	89034494	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ABCG2-90	NM_004827	exon9	c.C1155G	p.F385L	GTTTTTGAATGAA	.	187	33	211	1	.	3	3	0	0	0
KIAA0922	23240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	154557454	154557454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	KIAA0922-92	NM_001131007	exon35	c.C4559T	p.P1520L	TTCAGCCCTACCT	.	208	24	230	0	.	0	0	0	0	0
FNIP2	57600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	159756556	159756556	+	Splice_Site	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FNIP2-68	NM_020840	exon7	c.656-1G>A	.	ATCTTAGCACACA	.	298	56	305	0	.	0	0	0	0	0
LIFR	3977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38489203	38489203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LIFR-1173	NM_002310	exon16	c.C2312T	p.S771F	ATCTTAGATGTGT	.	109	26	96	0	.	4	1	3	0	0
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	70837317	70837317	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	BDP1-92	NM_018429	exon29	c.A6059T	p.D2020V	CAAAGGATAAAAG	.	184	33	179	1	.	7	4	3	0	0
PCDHB6	56130	ucsc.edu	37	5	140531445	140531445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PCDHB6-91	NM_018939	exon1	c.C1607T	p.S536F	GCGGCTCCCCGGC	.	113	3	167	6	.	23	14	9	0	0
PCDHGC4	56098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140864817	140864817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PCDHGC4-72	NM_018928	exon1	c.A77G	p.Y26C	TGGGTTACGTTTG	.	86	15	117	0	.	0	0	0	0	0
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	29079815	29079815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	OR2J3-90	NM_001005216	exon1	c.A148G	p.I50V	ATCATCATCCTGT	.	269	53	337	0	.	0	0	0	0	0
ZBTB22	9278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33284668	33284668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZBTB22-69	NM_001145338	exon2	c.G26A	p.S9N	GCCCCACTGGGAG	.	47	10	82	0	.	15	9	6	0	0
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42559909	42559909	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	UBR2-94	NM_001184801	exon3	c.C359G	p.T120S	ATCCAACTTGTGT	.	78	11	89	0	.	18	12	6	0	0
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44222677	44222677	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SLC35B2-91	NM_178148	exon4	c.C1065G	p.I355M	GTAAAAGATGAAG	.	29	6	47	0	.	78	48	30	0	0
UBE3D	90025	ucsc.edu;bcgsc.ca	37	6	83728805	83728805	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	.	NM_198920	exon8	c.C897A	p.S299S	ATATTTGGAATTT	.	69	10	53	0	.	1	1	0	0	0
TTYH3	80727	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	2691878	2691878	+	Splice_Site	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TTYH3-90	NM_025250	exon8	c.927+2T>C	.	AGCAGGTGAGAGC	.	40	6	55	0	.	1	1	0	0	0
GPNMB	10457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23313792	23313792	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GPNMB-580	NM_001005340	exon11	c.C1668G	p.N556K	GGGAAACCAGGAA	.	109	17	104	1	.	3046	2994	49	0	3
TPST1	8460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	65705725	65705725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TPST1-90	NM_003596	exon2	c.C313A	p.P105T	GTCATTCCCCGAA	.	96	39	74	0	.	31	11	20	0	0
ELN	2006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73474279	73474279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ELN-95	NM_001081754	exon23	c.C1493T	p.P498L	TGGCTCCTGGAGT	.	376	128	408	1	.	16	12	4	0	0
MCM7	4176	ucsc.edu;bcgsc.ca	37	7	99690937	99690937	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MCM7-651	NM_005916	exon14	c.G1936T	p.G646X	TGTCTCCTAGAAG	.	301	31	265	3	.	96	75	21	0	0
TRIM56	81844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100732355	100732355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TRIM56-226	NM_030961	exon3	c.T1762C	p.S588P	AGCCTCTCCCAGG	.	166	43	217	2	.	20	10	10	0	0
DLD	1738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107542828	107542828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DLD-226	NM_000108	exon4	c.T257C	p.I86T	GTTGTATTCCTTC	.	97	31	75	0	.	0	0	0	0	0
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116417457	116417457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MET-5874	NM_001127500	exon16	c.G3328A	p.V1110I	GGTTGTGTATATC	.	223	26	158	0	.	305	212	93	0	0
DLGAP2	9228	broad.mit.edu	37	8	1497740	1497740	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DLGAP2-22	NM_004745	exon2	c.T881A	p.L294Q	CTACGCTGACGGT	.	20	5	39	0	.	0	0	0	0	0
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	6302563	6302563	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MCPH1-229	NM_001172574	exon8	c.T1320C	p.A440A	CCCTGCTCAGTTG	.	120	18	117	0	.	8	7	1	0	0
TM2D2	83877	ucsc.edu	37	8	38853742	38853742	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TM2D2-90	NM_078473	exon1	c.T217A	p.C73S	AAGAGCAGAGGAT	.	47	3	45	0	.	0	0	0	0	0
HGSNAT	138050	hgsc.bcm.edu;broad.mit.edu	37	8	43002092	43002092	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	HGSNAT-68	NM_152419	exon2	c.C120G	p.D40E	ACCAGACTTAGAC	.	28	5	27	0	.	0	0	0	0	0
COL14A1	7373	broad.mit.edu	37	8	121170484	121170484	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	COL14A1-543	NM_021110	exon3	c.A204G	p.S68S	AACTTCAGGTAAA	.	79	3	64	0	.	0	0	0	0	0
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	131921969	131921969	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ADCY8-157	NM_001115	exon6	c.C1625G	p.S542C	CCTCCAGATTCGA	.	337	67	372	0	.	0	0	0	0	0
NAPRT1	93100	broad.mit.edu	37	8	144659504	144659504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	NAPRT1-91	NM_145201	exon4	c.T503C	p.M168T	AGGCCCATCTCTA	.	20	3	40	0	.	37	23	14	0	0
DENND4C	55667	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19369966	19369966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DENND4C-92	NM_017925	exon30	c.C5509T	p.P1837S	ATGAAGCCAGGCA	.	63	11	67	0	.	45	29	16	0	0
TEK	7010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	27197591	27197591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TEK-1584	NM_000459	exon12	c.A1903G	p.S635G	ACCCTTAGTGACA	.	38	8	44	0	.	0	0	0	0	0
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	88943326	88943326	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZCCHC6-92	NM_024617	exon11	c.G1537C	p.D513H	CACTGTCAGTATG	.	232	48	253	0	.	10	9	1	0	0
CRAT	1384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131864688	131864688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	CRAT-90	NM_000755	exon5	c.C621A	p.H207Q	GTAGTTGTGTACC	.	162	42	232	0	.	0	0	0	0	0
HDHD1	8226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	7023838	7023838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	HDHD1-130	NM_001135565	exon3	c.A172C	p.N58H	AGCGATTACATAT	.	33	12	34	0	.	6	1	5	0	0
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	101910063	101910063	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GPRASP1-131	NM_001099411	exon3	c.T1222A	p.W408R	GGGACCTGGTTCT	.	49	22	72	1	.	1	0	1	0	0
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	24908604	24908604	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ARHGAP21-235	NM_020824	exon9	c.2220delA	p.K740fs	.	.	156	25	177	0	.	0	0	0	0	0
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	70645179	70645179	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	STOX1-92	NM_152709	exon3	c.1627delT	p.F543fs	.	.	53	12	63	0	.	0	0	0	0	0
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	66765625	66765625	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GRIP1-494	NM_021150	exon22	c.2705delT	p.F902fs	.	.	202	34	219	0	.	0	0	0	0	0
RCBTB1	55213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	50115836	50115836	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RCBTB1-91	NM_018191	exon11	c.1300delG	p.D434fs	.	.	86	15	95	0	.	0	0	0	0	0
RCBTB1	55213	hgsc.bcm.edu	37	13	50115836	50115837	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RCBTB1-91	NM_018191	exon11	c.1299_1300del	p.433_434del	.	.	91	15	98	0	.	0	0	0	0	0
ADAP2	55803	hgsc.bcm.edu;broad.mit.edu	37	17	29261211	29261211	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ADAP2-91	NM_018404	exon5	c.406delG	p.E136fs	.	.	59	10	51	0	.	0	0	0	0	0
BAIAP2	10458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	79082274	79082274	+	Splice_Site	DEL	G	G	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	BAIAP2-90	NM_001144888	exon13	c.1501-1G>-	.	.	.	55	12	70	0	.	0	0	0	0	0
SOCS6	9306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	67992496	67992496	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SOCS6-721	NM_004232	exon2	c.592delA	p.N198fs	.	.	129	28	146	0	.	0	0	0	0	0
PLCD1	5333	broad.mit.edu;bcgsc.ca	37	3	38051199	38051201	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	TCG	TCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PLCD1-226	NM_001130964	exon9	c.1452_1454del	p.484_485del	GCAGCCTCGTCTT	.	42	9	42	0	.	0	0	0	0	0
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	108107907	108107918	+	In_Frame_Del	DEL	TTCCAGTTCACG	TTCCAGTTCACG	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	TTCCAGTTCACG	TTCCAGTTCACG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MYH15-73	NM_014981	exon39	c.5494_5505del	p.1832_1835del	.	.	136	21	242	0	.	0	0	0	0	0
SEC22A	26984	broad.mit.edu	37	3	122978380	122978380	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SEC22A-91	NM_012430	exon6	c.667delG	p.D223fs	GATGGTGATGATT	.	50	8	40	0	.	0	0	0	0	0
ANK2	287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	114195785	114195785	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ANK2-583	NM_001148	exon15	c.1663delG	p.A555fs	.	.	69	12	85	0	.	0	0	0	0	0
SYNPO	11346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	150027927	150027927	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SYNPO-153	NM_001166209	exon3	c.822delA	p.L274fs	.	.	92	24	135	0	.	0	0	0	0	0
ZFP37	7539	broad.mit.edu;bcgsc.ca	37	9	115806495	115806495	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZFP37-92	NM_003408	exon4	c.403delC	p.L135fs	TGAGGAGTTTGTT	.	190	27	158	0	.	0	0	0	0	0
OR1N1	138883	bcgsc.ca	37	9	125288660	125288670	+	Frame_Shift_Del	DEL	GACTGAAGAGC	GACTGAAGAGC	-	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	GACTGAAGAGC	GACTGAAGAGC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	OR1N1-133	NM_012363	exon1	c.903_913del	p.301_305del	TCCTGTGACTGAA	.	78	4	82	0	.	0	0	0	0	0
LRRC27	80313	broad.mit.edu;bcgsc.ca	37	10	134144951	134144952	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LRRC27-91	.	.	.	.	TTCCTCGCCCCCC	.	32	7	60	0	.	0	0	0	0	0
GIF	2694	broad.mit.edu;bcgsc.ca	37	11	59610051	59610052	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GIF-92	NM_005142	exon4	c.376_377insC	p.N126fs	CAGCGTTGGGGCC	.	55	9	68	0	.	0	0	0	0	0
INTS2	57508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	59945081	59945082	+	In_Frame_Ins	INS	-	-	GAA	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	INTS2-206	NM_020748	exon25	c.3452_3453insTTC	p.Q1151delinsLQ	.	.	132	27	100	0	.	0	0	0	0	0
BCR	613	broad.mit.edu;bcgsc.ca	37	22	23523615	23523616	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	BCR-1349	NM_021574	exon1	c.468_469insA	p.S156fs	CAGGTCCAACTTC	.	83	18	92	0	.	0	0	0	0	0
RPL24	6152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	101401697	101401698	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RPL24-90	NM_000986	exon4	c.247_248insT	p.T83fs	.	.	98	23	96	0	.	0	0	0	0	0
SLC7A14	57709	broad.mit.edu;bcgsc.ca	37	3	170201153	170201154	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SLC7A14-94	NM_020949	exon6	c.1065_1066insT	p.F355fs	CATCGGGAAGAGG	.	105	12	152	0	.	0	0	0	0	0
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	41496201	41496202	+	Missense_Mutation	DNP	AA	AA	TG	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DSCAM		exon20	c.T3616C	p.F1206H	ACACAAAGACCAT	.	163.0	26.0	207.0	0.0	.	0	0	0	0	0