Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 FBXO2 26232 hgsc.bcm.edu 37 1 11710791 11710791 + Silent SNP C C G rs61749273 bycluster TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . FBXO2-226 NM_012168 exon2 c.G123C p.A41A GGCGGCCGCCGCC . 4 2 1 0 . 0 0 0 0 0 SYDE2 84144 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 85648788 85648788 + Missense_Mutation SNP T T C novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . SYDE2-70 NM_032184 exon3 c.A1537G p.N513D ACCAATTAATTGA . 156 9 154 0 . 0 0 0 0 0 LAMB3 3914 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 209800244 209800244 + Missense_Mutation SNP C C T rs144249951 TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . LAMB3-156 NM_000228 exon13 c.G1565A p.R522Q TAGGTCCGGTCTG . 73 15 68 0 C|1.000;T|0.000 6 2 4 0 0 FBXO28 23219 hgsc.bcm.edu;broad.mit.edu 37 1 224302059 224302059 + Silent SNP C C G novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . FBXO28-661 NM_001136115 exon1 c.C228G p.L76L CATCCTCAGCTTT . 25 3 11 0 . 4 4 0 0 0 SBF2 81846 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 10011061 10011061 + Missense_Mutation SNP C C T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . SBF2-93 NM_030962 exon13 c.G1378A p.E460K GTTGCTCAGCAAG . 61 15 56 0 . 2 2 0 0 0 SLCO2B1 11309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 74880776 74880776 + Missense_Mutation SNP C C A novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . SLCO2B1-154 NM_007256 exon6 c.C748A p.R250S ATGCTGCGCCTTT . 155 43 158 0 . 11 10 1 0 0 BAZ2A 11176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 57005874 57005874 + Missense_Mutation SNP G G A novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . BAZ2A-22 NM_013449 exon6 c.C1298T p.T433I GGGGAGGTTGTTG . 73 55 37 0 . 14 4 10 0 0 ASCL1 429 hgsc.bcm.edu 37 12 103352211 103352211 + Silent SNP G G C novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . ASCL1-90 NM_004316 exon1 c.G189C p.A63A GCAGGCGCCGCAG . 14 5 7 2 . 0 0 0 0 0 KBTBD7 84078 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 41767953 41767953 + Silent SNP G G A novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . KBTBD7-91 NM_032138 exon1 c.C441T p.A147A GTCGGAGGCCGCG . 105 31 115 0 . 3 2 1 0 0 TDRD3 81550 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 61103190 61103190 + Missense_Mutation SNP G G A novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . TDRD3-516 NM_001146070 exon11 c.G1831A p.A611T GTCACAGCTGTAC . 84 32 57 0 . 15 12 3 0 0 SLC7A8 23428 hgsc.bcm.edu 37 14 23597353 23597353 + Missense_Mutation SNP A A G novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . SLC7A8-91 NM_012244 exon10 c.T1316C p.V439A CTGAAGACCAGCA . 47 3 62 0 . 4 4 0 0 0 FANCM 57697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 45650876 45650876 + Missense_Mutation SNP G G A novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . FANCM-569 NM_020937 exon16 c.G4354A p.A1452T CTTCATGCTGTCA . 50 13 48 0 . 2 1 1 0 0 TBPL2 387332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 55890942 55890942 + Missense_Mutation SNP A A C novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . TBPL2-90 NM_199047 exon6 c.T986G p.I329S CTATAAATAAGAC . 142 40 151 0 . 0 0 0 0 0 GPR135 64582 hgsc.bcm.edu 37 14 59931931 59931931 + Missense_Mutation SNP T T G rs1752428 TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . GPR135-90 NM_022571 exon1 c.A14C p.Q5P GGCGGCTGCGGCT . 3 3 0 0 T|0.531;G|0.469 0 0 0 0 0 KCNH5 27133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 63447722 63447722 + Missense_Mutation SNP G G T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . KCNH5-98 NM_172375 exon6 c.C810A p.F270L CCCCACGAAAGTC . 81 35 62 0 . 0 0 0 0 0 RYR3 6263 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 33603296 33603296 + Missense_Mutation SNP C C T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . RYR3-520 NM_001243996 exon1 c.C50T p.T17I TGAGGACTGTGAG . 47 16 48 0 . 0 0 0 0 0 ADPGK 83440 hgsc.bcm.edu 37 15 73045222 73045222 + Silent SNP C C A novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . ADPGK-90 NM_031284 exon7 c.G951T p.A317A AGTCACCGCGGGA . 71 4 66 0 . 22 21 1 0 0 CSPG4 1464 hgsc.bcm.edu 37 15 75982391 75982391 + Missense_Mutation SNP G G A rs200187536 TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . CSPG4-229 NM_001897 exon3 c.C1015T p.R339C CCAGGCGGTGTTC . 41 5 33 1 G|0.999;A|0.001 3 3 0 0 0 WDR90 197335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 716291 716291 + Missense_Mutation SNP C C A rs143767432 alternate_allele TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . WDR90-92 NM_145294 exon37 c.C4681A p.R1561S ACCTTCCGTGTGC . 98 27 105 0 C|0.996;T|0.004 35 20 15 0 0 TMC5 79838 hgsc.bcm.edu 37 16 19498618 19498618 + Missense_Mutation SNP T T C novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . TMC5-91 NM_001105249 exon17 c.T2543C p.V848A CCGGGGTCTTGTG . 77 4 63 0 . 0 0 0 0 0 GTF3C1 2975 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 27519910 27519910 + Missense_Mutation SNP A A G novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . GTF3C1-94 NM_001520 exon8 c.T1193C p.L398P GCTTCTAGTTTTC . 118 36 91 0 . 2 2 0 0 0 PELP1 27043 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 4575082 4575082 + Silent SNP C C T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . PELP1-24 NM_014389 exon16 c.G3204A p.E1068E CTCAGTCTCCTCT . 67 12 49 0 . 109 74 35 0 0 SOX15 6665 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 7492754 7492754 + Missense_Mutation SNP T T C novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . SOX15-135 NM_006942 exon1 c.A241G p.K81E GGCGCTTGGAGAT . 58 22 52 0 . 1 0 1 0 0 TMEM88 92162 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 7758402 7758402 + Missense_Mutation SNP G G T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . TMEM88-68 NM_203411 exon1 c.G10T p.V4F GCGGATGTCCCCG . 43 11 33 1 . 6 6 0 0 0 TLCD1 116238 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 27052951 27052951 + Silent SNP G G T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . TLCD1-68 NM_138463 exon1 c.C165A p.S55S CACAATGGAGTGA . 82 31 63 0 . 9 6 3 0 0 DDX52 11056 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 36003445 36003445 + Missense_Mutation SNP T T C novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . DDX52-228 NM_007010 exon1 c.A5G p.D2G TGGACGTCCATCT . 85 17 77 0 . 1 0 1 0 0 KRT27 342574 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 38933310 38933310 + Missense_Mutation SNP T T C novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . KRT27-90 NM_181537 exon8 c.A1321G p.T441A CCACAGTGTGAAC . 133 28 120 0 . 0 0 0 0 0 KRTAP4-6 81871 broad.mit.edu;bcgsc.ca 37 17 39296291 39296291 + Missense_Mutation SNP C C A novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . . NM_030976 exon1 c.G449T p.C150F GGGCGGCAGCAGC . 60 6 37 0 . 0 0 0 0 0 FOXJ1 2302 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 74134123 74134123 + Missense_Mutation SNP C C A novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . FOXJ1-227 NM_001454 exon3 c.G577T p.G193C AGAAGCCCCCCTT . 58 19 70 0 . 14 5 9 0 0 ARID3A 1820 hgsc.bcm.edu 37 19 971936 971936 + Silent SNP C C G rs138086881 byfrequency;alternate_allele TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . ARID3A-90 NM_005224 exon9 c.C1653G p.G551G AGGAGGCGGCGGC . 89 5 67 0 C|0.999;T|0.001 0 0 0 0 0 HNRNPM 4670 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 8551158 8551158 + Missense_Mutation SNP G G A rs199749036 TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . HNRNPM-68 NM_005968 exon14 c.G1846A p.G616S GGTGGCGGTGCCA . 74 28 85 0 G|0.999;A|0.000 91 56 35 0 0 ZNF497 162968 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 58867603 58867603 + Nonsense_Mutation SNP C C A novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . ZNF497-90 NM_001207009 exon2 c.G1399T p.E467X GCCTCTCGCCCGT . 30 9 17 0 . 8 3 5 0 0 LRPPRC 10128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 44207047 44207047 + Silent SNP A A G novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . LRPPRC-93 NM_133259 exon3 c.T387C p.S129S ACCACAACTACGT . 75 23 50 0 . 8 6 2 0 0 SCN7A 6332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 167284362 167284362 + Missense_Mutation SNP A A T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . SCN7A-67 NM_002976 exon17 c.T2789A p.I930N TCTACAATCTTGC . 46 15 30 0 . 0 0 0 0 0 CTCFL 140690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 56090837 56090837 + Missense_Mutation SNP C C G novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . CTCFL-292 NM_001269044 exon5 c.G1113C p.Q371H GCAACACTGAAAG . 296 139 247 0 . 0 0 0 0 0 MICAL3 57553 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 18293564 18293564 + Missense_Mutation SNP C C T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . MICAL3-68 NM_015241 exon28 c.G5461A p.E1821K CCTCCTCCGTGTA . 93 21 91 0 . 17 8 9 0 0 AP1B1 162 hgsc.bcm.edu 37 22 29738275 29738275 + Missense_Mutation SNP T T C novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . AP1B1-92 NM_001127 exon12 c.A1535G p.Q512R CCCACCTGAGTGG . 38 3 29 0 . 0 0 0 0 0 MEI1 150365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 42154472 42154472 + Silent SNP A A C novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . MEI1-70 NM_152513 exon18 c.A2055C p.G685G GGAGGGAGCTGCT . 36 12 36 0 . 0 0 0 0 0 POLDIP3 84271 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 43010826 43010826 + Missense_Mutation SNP C C T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . POLDIP3-90 NM_178136 exon1 c.G38A p.R13H GCCCCGCGCTTCC . 110 26 125 0 . 7 5 2 0 0 MCAT 27349 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 43533107 43533107 + Missense_Mutation SNP C C T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . MCAT-91 NM_173467 exon3 c.G709A p.V237M AAATCACCCTGCA . 245 62 211 0 . 54 30 24 0 0 SHISA5 51246 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 48510782 48510782 + Silent SNP C C T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . SHISA5-68 NM_016479 exon5 c.G621A p.P207P GTAGGCCGGTGGG . 135 30 148 0 . 139 102 37 0 0 KPNA4 3840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 160249310 160249310 + Missense_Mutation SNP T T C novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . KPNA4-226 NM_002268 exon6 c.A323G p.D108G AAGTCATCAATTG . 139 31 153 0 . 23 18 5 0 0 SLC30A9 10463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 42037333 42037333 + Missense_Mutation SNP T T G novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . SLC30A9-91 NM_006345 exon7 c.T652G p.F218V AGAGATTTCTTGG . 139 33 123 0 . 10 4 6 0 0 PRDM9 56979 hgsc.bcm.edu 37 5 23526915 23526915 + Missense_Mutation SNP T T C rs199686868 alternate_allele TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . PRDM9-139 NM_020227 exon11 c.T1718C p.I573T AGAGGATACACAC . 153 8 133 1 . 0 0 0 0 0 ZCCHC9 84240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 80600585 80600585 + Silent SNP G G A novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . ZCCHC9-91 NM_001131036 exon2 c.G9A p.R3R GACCAGGTGGGCC . 124 34 83 0 . 6 5 1 0 0 PCDHGA6 56109 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140753888 140753888 + Nonsense_Mutation SNP C C T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . PCDHGA6-67 NM_018919 exon1 c.C238T p.R80X AATCCGCGAAACG . 103 36 84 0 . 1 1 0 0 0 PWWP2A 114825 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 159520919 159520919 + Silent SNP G G A novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . PWWP2A-68 NM_052927 exon2 c.C738T p.V246V ATGCGGGACAGGA . 116 33 111 0 . 5 3 2 0 0 RPL10A 4736 broad.mit.edu 37 6 35436591 35436591 + Silent SNP C C T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . RPL10A-91 NM_007104 exon2 c.C21T p.R7R CTCTCGCGACACC . 21 4 17 0 . 1569 991 576 2 0 TNFAIP3 7128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 138200108 138200108 + Missense_Mutation SNP C C T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . TNFAIP3-1498 NM_001270507 exon7 c.C1526T p.A509V GCCACGCCCCAGA . 73 17 74 0 . 44 40 4 0 0 CBX3 11335 hgsc.bcm.edu 37 7 26251700 26251700 + Splice_Site SNP A A T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . CBX3-227 NM_007276 exon6 c.426-2A>T . TAAAACAGGAAAG . 68 5 58 0 . 0 0 0 0 0 FAM91A1 157769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 124787418 124787418 + Nonsense_Mutation SNP C C A novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . FAM91A1-91 NM_144963 exon3 c.C189A p.Y63X CAGATACTATGAG . 74 33 56 0 . 1 1 0 0 0 SUSD1 64420 hgsc.bcm.edu;bcgsc.ca 37 9 114820888 114820888 + Missense_Mutation SNP A A T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . SUSD1-90 NM_022486 exon14 c.T1929A p.F643L GTTGCTAAAGAAG . 146 36 134 0 . 3 3 0 0 0 BSPRY 54836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 116132384 116132384 + Missense_Mutation SNP T T A novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . BSPRY-135 NM_017688 exon6 c.T1171A p.F391I CCAGTCTTTGCTG . 118 37 156 1 . 10 7 3 0 0 DFNB31 25861 hgsc.bcm.edu 37 9 117170277 117170277 + Missense_Mutation SNP T T C novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . DFNB31-95 NM_001173425 exon8 c.A1648G p.T550A CGCCAGTTTCCTC . 15 2 25 0 . 8 8 0 0 0 RPL7A 6130 ucsc.edu 37 9 136216909 136216909 + Splice_Site SNP T T A novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . RPL7A-90 NM_000972 exon4 c.415+2T>A . AGCAGGTGAGTAG . 116 1 105 1 . 1 1 0 0 0 C9orf172 389813 broad.mit.edu 37 9 139739071 139739071 + Missense_Mutation SNP G G C novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . . NM_001080482 exon1 c.G205C p.E69Q CTGCCGGAGCCAC . 8 3 9 0 . 2 1 1 0 0 ERRFI1 54206 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 8075357 8075374 + Frame_Shift_Del DEL AGAATACATACCAAGTGG AGAATACATACCAAGTGG - novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 AGAATACATACCAAGTGG AGAATACATACCAAGTGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . ERRFI1-91 NM_018948 exon3 c.196_202del p.66_68del . . 80 12 89 0 . 0 0 0 0 0 COL17A1 1308 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 105793785 105793785 + Frame_Shift_Del DEL G G - novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . COL17A1-95 NM_000494 exon52 c.4074delC p.G1358fs . . 99 17 104 0 . 0 0 0 0 0 MICALCL 84953 broad.mit.edu 37 11 12316384 12316389 + In_Frame_Del DEL CTCCTA CTCCTA - novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 CTCCTA CTCCTA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . MICALCL-91 NM_032867 exon3 c.1406_1411del p.469_471del CTCCTCCTCCTAC . 9 5 8 0 . 0 0 0 0 0 BIVM-ERCC5 0 broad.mit.edu 37 13 103524612 103524612 + Frame_Shift_Del DEL A A - novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . . NM_001204425 exon21 c.4105delA p.K1369fs AAAGTGAAAAAAA . 72 7 70 0 . 0 0 0 0 0 PIPOX 51268 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 27380072 27380083 + In_Frame_Del DEL GGTTGCCCAGGG GGTTGCCCAGGG - novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 GGTTGCCCAGGG GGTTGCCCAGGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . PIPOX-90 NM_016518 exon3 c.398_409del p.133_137del . . 126 27 148 0 . 0 0 0 0 0 C17orf70 80233 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 79514289 79514299 + Frame_Shift_Del DEL TGAGACTGTAG TGAGACTGTAG - novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 TGAGACTGTAG TGAGACTGTAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . C17orf70-92 NM_025161 exon5 c.1809_1819del p.603_607del . . 90 31 89 0 . 0 0 0 0 0 ACVR2A 92 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 148684830 148684834 + Frame_Shift_Del DEL AATCT AATCT - novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 AATCT AATCT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . ACVR2A-831 NM_001616 exon11 c.1529_1533del p.510_511del . . 80 17 49 0 . 0 0 0 0 0 SLC35A5 55032 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 112282282 112282290 + In_Frame_Del DEL TATGCTCCT TATGCTCCT - novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 TATGCTCCT TATGCTCCT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . SLC35A5-91 NM_017945 exon2 c.32_40del p.11_14del . . 89 19 98 0 . 0 0 0 0 0 SUSD1 64420 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 114820886 114820886 + Frame_Shift_Del DEL C C - novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . SUSD1-90 NM_022486 exon14 c.1931delG p.S644fs . . 144 34 135 0 . 0 0 0 0 0 SUSD1 64420 hgsc.bcm.edu 37 9 114820890 114820890 + Frame_Shift_Del DEL A A - novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . SUSD1-90 NM_022486 exon14 c.1927delT p.F643fs . . 142 26 133 0 . 0 0 0 0 0 PCDH8 5100 broad.mit.edu 37 13 53421017 53421018 + Frame_Shift_Ins INS - - AT novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . PCDH8-153 NM_032949 exon1 c.1555_1556insAT p.V519fs CGGCCACCGTGGC . 7 3 13 0 . 0 0 0 0 0 PDE9A 5152 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 44185564 44185565 + Frame_Shift_Ins INS - - G novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . PDE9A-92 NM_002606 exon15 c.1316_1317insG p.M439fs . . 41 16 53 0 . 0 0 0 0 0 SEC14L2 23541 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 30805476 30805477 + Splice_Site INS - - T novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . SEC14L2-90 NM_033382 exon7 c.580+1->T . . . 122 33 136 0 . 0 0 0 0 0 ADAM9 8754 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 38880710 38880711 + Frame_Shift_Ins INS - - GG novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . ADAM9-227 NM_003816 exon9 c.780_781insGG p.V260fs . . 80 26 84 0 . 0 0 0 0 0 COL17A1 1308 bcgsc.ca 37 10 105793785 105793786 + Missense_Mutation DNP GC GC AA novel TCGA-DW-7841-01A-11D-2136-08 TCGA-DW-7841-10A-01D-2136-08 GC GC - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq aa4db950-5986-4268-9554-23eeace63f53 77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea . COL17A1-95 NM_000494 exon52 c.G4073T p.G1358V CCATTGCCAGCAT . 88 17 100 0 . 0 0 0 0 0