Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 CROCC 9696 broad.mit.edu 37 1 17272075 17272075 + Missense_Mutation SNP G G A rs2781608 TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . CROCC-137 NM_014675 exon15 c.G2110A p.A704T GAGAAGGCCGAGG . 30 4 54 0 G|0.935;A|0.065 27 13 14 0 0 CR1L 1379 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 207818592 207818592 + Missense_Mutation SNP T T G novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . CR1L-46 NM_175710 exon1 c.T14G p.V5G CTCCCGTCCGTCT . 117 59 172 0 . 0 0 0 0 0 ATF3 467 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 212791490 212791490 + Missense_Mutation SNP A A G novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . ATF3-658 NM_001674 exon3 c.A262G p.R88G GATGAAAGGAAAA . 90 47 128 1 . 7 5 2 0 0 C1orf35 79169 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 228290925 228290925 + Missense_Mutation SNP A A C novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . C1orf35-90 NM_024319 exon1 c.T4G p.F2V AGCCGAACATGGC . 48 28 62 0 . 17 7 10 0 0 CUBN 8029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 16943441 16943441 + Missense_Mutation SNP T T C novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . CUBN-166 NM_001081 exon52 c.A8080G p.I2694V CACCTATCTGTAT . 92 53 88 0 . 1 1 0 0 0 NRG3 10718 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 83635770 83635770 + Missense_Mutation SNP C C A novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . NRG3-522 NM_001165972 exon1 c.C674A p.P225H CCTGGCCTACTGC . 58 28 77 0 . 7 3 4 0 0 LIPJ 142910 bcgsc.ca 37 10 90362367 90362367 + Missense_Mutation SNP C C A novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . LIPJ-91 NM_001010939 exon9 c.C758A p.A253E ACCCAGCAGGAAC . 61 5 55 0 . 0 0 0 0 0 EPS8L2 64787 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 723296 723296 + Nonsense_Mutation SNP C C A rs142895363 alternate_allele TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . EPS8L2-91 NM_022772 exon15 c.C1397A p.S466X CCACTTCAGAGCC . 134 59 184 0 C|0.999;T|0.001 75 50 25 0 0 SCUBE2 57758 hgsc.bcm.edu 37 11 9113002 9113002 + Missense_Mutation SNP A A G rs60494098 TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . SCUBE2-92 NM_001170690 exon1 c.T74C p.L25P AGCAGCAGTGGCG . 4 3 4 1 A|0.699;G|0.301 0 0 0 0 0 TRIM51 84767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 55658774 55658774 + Missense_Mutation SNP A A G novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . . NM_032681 exon7 c.A1025G p.Y342C AATATTATTGGGA . 125 56 80 0 . 0 0 0 0 0 B3GNT1 11041 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 66114291 66114291 + Missense_Mutation SNP T T A novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . B3GNT1-90 NM_006876 exon1 c.A726T p.E242D CAGCATTTCCCGC . 169 82 240 0 . 66 33 33 0 0 PICALM 8301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 85722090 85722090 + Missense_Mutation SNP A A G novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . PICALM-659 NM_007166 exon7 c.T748C p.F250L TGAGGAACTCTGA . 30 18 18 0 . 149 75 74 0 0 FAT3 120114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 92590392 92590392 + Missense_Mutation SNP C C T novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . FAT3-73 NM_001008781 exon19 c.C11378T p.P3793L TGTGTCCGGGGTC . 113 51 168 0 . 0 0 0 0 0 PPFIBP1 8496 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 27787953 27787953 + Silent SNP T T C novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . PPFIBP1-228 NM_003622 exon4 c.T175C p.L59L GGATTGTTAGAGA . 103 46 112 0 . 19 12 7 0 0 ARF3 377 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 49333834 49333834 + Missense_Mutation SNP C C G novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . ARF3-227 NM_001659 exon3 c.G205C p.G69R GGCCACCCACATC . 101 41 182 0 . 281 144 137 0 0 MBD6 114785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 57920964 57920964 + Missense_Mutation SNP C C T novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . MBD6-516 NM_052897 exon7 c.C2036T p.A679V ATTCTGCGCTGCT . 18 13 35 0 . 34 13 21 0 0 HCFC2 29915 bcgsc.ca 37 12 104473281 104473281 + Missense_Mutation SNP A A G novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . HCFC2-92 NM_013320 exon4 c.A532G p.S178G GGTTGGAGCATTC . 99 4 99 1 . 1 1 0 0 0 BTBD11 121551 bcgsc.ca 37 12 108011117 108011117 + Missense_Mutation SNP C C T novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . BTBD11-93 NM_001018072 exon9 c.C2135T p.A712V GTGGTGCCGATCC . 157 6 239 0 . 1 1 0 0 0 MED13L 23389 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 116429670 116429670 + Missense_Mutation SNP G G C novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . MED13L-232 NM_015335 exon17 c.C3089G p.A1030G TTGCTGGCTGGGG . 77 35 79 0 . 17 8 9 0 0 ZMYM2 7750 hgsc.bcm.edu 37 13 20601376 20601376 + Missense_Mutation SNP A A G novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . ZMYM2-685 NM_001190964 exon10 c.A1769G p.N590S AGCGAAACTCTTT . 16 2 10 0 . 25 25 0 0 0 STARD13 90627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 33700266 33700266 + Missense_Mutation SNP T T G rs143789881 byfrequency;alternate_allele TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . STARD13-94 NM_178006 exon7 c.A2034C p.Q678H AATACTTTGAGGC . 185 91 210 0 T|1.000;C|0.000 3 2 1 0 0 SLC38A6 145389 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 61449295 61449295 + Missense_Mutation SNP A A C novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . SLC38A6-92 NM_153811 exon2 c.A175C p.M59L GCCATCATGGGAA . 102 48 110 0 . 9 5 4 0 0 TJP1 7082 bcgsc.ca 37 15 30033565 30033565 + Missense_Mutation SNP G G A novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . TJP1-95 NM_175610 exon10 c.C1226T p.P409L GAATTAGGTAGGA . 69 5 93 0 . 14 14 0 0 0 WWP2 11060 bcgsc.ca 37 16 69971116 69971116 + Missense_Mutation SNP G G A novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . WWP2-658 NM_001270454 exon20 c.G2213A p.R738H GGCTGCGCTACTT . 97 6 104 0 . 44 44 0 0 0 ADAD2 161931 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 84228944 84228944 + Missense_Mutation SNP T T A novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . ADAD2-68 NM_139174 exon6 c.T1022A p.L341Q ACAAGCTGGTGGC . 28 11 59 0 . 0 0 0 0 0 TVP23C 201158 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA . 503 62 410 56 . 75 12 63 0 0 SREBF1 6720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 17721579 17721579 + Missense_Mutation SNP T T C novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . SREBF1-91 NM_001005291 exon7 c.A1268G p.K423R CTGCTTTTGTGGA . 102 27 124 0 . 0 0 0 0 0 KRTAP2-1 81872 broad.mit.edu 37 17 39203187 39203187 + Silent SNP G G A novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . . NM_001123387 exon1 c.C333T p.P111P GCAGGGGGGCCGG . 13 3 12 0 . 0 0 0 0 0 CYP2A6 1548 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 41352945 41352945 + Missense_Mutation SNP C C T novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . CYP2A6-92 NM_000762 exon5 c.G666A p.M222I AGAGAACATCTCA . 110 25 168 0 . 0 0 0 0 0 CYP2A7 1549 hgsc.bcm.edu;broad.mit.edu 37 19 41384830 41384830 + Missense_Mutation SNP C C T novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . CYP2A7-93 NM_000764 exon5 c.G666A p.M222I AGAGAACATCTCA . 65 9 82 0 . 0 0 0 0 0 DMPK 1760 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 46281110 46281110 + Missense_Mutation SNP C C T novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . DMPK-546 NM_001081563 exon6 c.G727A p.G243S GGGTGCCCACAGC . 98 43 166 0 . 19 9 10 0 0 NLRP2 55655 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 55494859 55494859 + Missense_Mutation SNP C C T novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . NLRP2-120 NM_017852 exon6 c.C1793T p.T598M ATTCAACGGTGAC . 84 39 95 0 . 0 0 0 0 0 ALMS1 7840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 73827935 73827935 + Silent SNP T T C novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . ALMS1-142 NM_015120 exon18 c.T11796C p.R3932R AAAACGTGAAGAG . 51 28 76 0 . 44 20 24 0 0 SPAG16 79582 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 214161997 214161997 + Missense_Mutation SNP C C G novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . SPAG16-188 NM_024532 exon3 c.C195G p.D65E AGATGACAATTTT . 99 36 61 0 . 0 0 0 0 0 SNX5 27131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 17933351 17933351 + Missense_Mutation SNP C C G novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . SNX5-289 NM_014426 exon5 c.G393C p.E131D GAGATACTCACTG . 33 15 37 0 . 0 0 0 0 0 MIR658 724028 bcgsc.ca 37 22 38240305 38240305 + RNA SNP T T G novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . . . . . . CGGACCTACTTCC . 26 8 49 0 . 1 1 0 0 0 PDZRN3 23024 hgsc.bcm.edu 37 3 73673578 73673578 + Silent SNP G G C rs6763344 TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . PDZRN3-232 NM_015009 exon1 c.C399G p.A133A GTCGCAGGCGTCG . 2 2 0 0 G|0.119;C|0.881 0 0 0 0 0 XRN1 54464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 142141567 142141567 + Missense_Mutation SNP A A T novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . XRN1-93 NM_001042604 exon8 c.T824A p.I275N CTTTCAATATCAT . 66 28 88 0 . 4 2 2 0 0 SLBP 7884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 1701385 1701385 + Missense_Mutation SNP C C G novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . SLBP-90 NM_006527 exon5 c.G385C p.E129Q CTGTCTCAAAGTC . 114 56 138 0 . 56 23 33 0 0 BOD1L1 259282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 13604361 13604361 + Missense_Mutation SNP C C T novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . . NM_148894 exon10 c.G4163A p.S1388N AACTTACTTCCAA . 125 63 127 0 . 7 3 4 0 0 GRIA1 2890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 153078528 153078528 + Missense_Mutation SNP C C G novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . GRIA1-96 NM_001258021 exon10 c.C1377G p.H459Q CAAGCACGTGGGC . 74 33 104 0 . 0 0 0 0 0 PTK7 5754 hgsc.bcm.edu;bcgsc.ca 37 6 43044271 43044271 + Silent SNP T T G novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . PTK7-1493 NM_152882 exon1 c.T45G p.P15P GTTGCCTCTGCTC . 25 18 34 0 . 7 4 3 0 0 SP8 221833 hgsc.bcm.edu 37 7 20824953 20824953 + Silent SNP G G C novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . SP8-91 NM_182700 exon2 c.C483G p.G161G GCCGCCGCCCCCG . 14 5 9 2 . 0 0 0 0 0 SP8 221833 hgsc.bcm.edu 37 7 20824956 20824956 + Silent SNP C C G rs201180283 TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . SP8-91 NM_182700 exon2 c.G480C p.G160G GCCGCCCCCGCCG . 12 4 9 0 . 10 0 8 2 0 HNRNPA2B1 3181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 26235509 26235509 + Missense_Mutation SNP C C T novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . HNRNPA2B1-70 NM_031243 exon8 c.G715A p.G239R CAAATCCACGTCC . 74 33 99 0 . 822 405 417 0 0 MGAM 8972 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 141731533 141731533 + Silent SNP T T G novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . MGAM-70 NM_004668 exon13 c.T1524G p.V508V TGCTGTTTGGTGG . 149 70 109 0 . 0 0 0 0 0 TAS2R41 259287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 143175477 143175477 + Missense_Mutation SNP A A T novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . TAS2R41-92 NM_176883 exon1 c.A512T p.K171M CCTACAAGTGGAA . 50 20 76 0 . 0 0 0 0 0 DENND4C 55667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 19316719 19316719 + Missense_Mutation SNP A A T novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . DENND4C-92 NM_017925 exon12 c.A1689T p.Q563H AATTCAAGAGGCA . 212 95 237 0 . 1 0 1 0 0 DENND1A 57706 hgsc.bcm.edu;bcgsc.ca 37 9 126214605 126214605 + Missense_Mutation SNP T T C novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . DENND1A-92 NM_024820 exon17 c.A1249G p.N417D CAGTATTCAGAAT . 79 5 112 0 . 17 17 0 0 0 NUDT10 170685 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 51075840 51075840 + Missense_Mutation SNP C C T novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . NUDT10-90 NM_153183 exon2 c.C23T p.T8I ACCAGACACGGAC . 68 12 94 0 . 0 0 0 0 0 NUDT11 55190 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 51239274 51239274 + Missense_Mutation SNP G G A novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . NUDT11-130 NM_018159 exon1 c.C23T p.T8M GTCCGCGTCTGGT . 26 12 41 0 . 0 0 0 0 0 RGAG4 340526 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 71351213 71351213 + Missense_Mutation SNP T T C novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . RGAG4-132 NM_001024455 exon1 c.A178G p.I60V GCACTATGGGTAC . 118 53 190 0 . 7 7 0 0 0 COL11A1 1301 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 103400626 103400626 + Frame_Shift_Del DEL G G - novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . COL11A1-586 NM_080629 exon45 c.3518delC p.P1173fs . . 48 18 43 0 . 0 0 0 0 0 TNRC6A 27327 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 24802526 24802526 + Frame_Shift_Del DEL G G - novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . TNRC6A-92 NM_014494 exon6 c.2563delG p.D855fs . . 67 28 73 0 . 0 0 0 0 0 TMEM131 23505 broad.mit.edu 37 2 98427639 98427639 + Frame_Shift_Del DEL T T - novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . TMEM131-74 NM_015348 exon18 c.1920delA p.K640fs CTCTAATTTTTTT . 304 7 262 0 . 0 0 0 0 0 WFDC10A 140832 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 44258534 44258534 + Frame_Shift_Del DEL A A - novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . WFDC10A-90 NM_080753 exon1 c.82delA p.R28fs . . 49 20 53 0 . 0 0 0 0 0 ATP11B 23200 bcgsc.ca 37 3 182597406 182597429 + In_Frame_Del DEL GCTGTCGTATGGCTCCACTGCAGA GCTGTCGTATGGCTCCACTGCAGA - novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 GCTGTCGTATGGCTCCACTGCAGA GCTGTCGTATGGCTCCACTGCAGA - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . ATP11B-93 NM_014616 exon20 c.2375_2398del p.792_800del TATTATGCTGTCG . 51 5 93 0 . 0 0 0 0 0 SAMD9 54809 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 92734994 92734994 + Frame_Shift_Del DEL T T - novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . SAMD9-140 NM_001193307 exon2 c.417delA p.K139fs . . 113 50 102 0 . 0 0 0 0 0 LRRC14 9684 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 145746824 145746825 + Frame_Shift_Del DEL AT AT - novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 AT AT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . LRRC14-90 NM_001272036 exon5 c.1444_1445del p.482_482del . . 47 23 88 0 . 0 0 0 0 0 HOMER2 9455 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 83518619 83518620 + Frame_Shift_Ins INS - - T novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 . HOMER2-67 NM_199330 exon9 c.913_914insA p.V305fs . . 112 53 152 0 . 0 0 0 0 0 ERBB2 2064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 37880219 37880220 + Missense_Mutation DNP TT TT CC novel TCGA-DW-7839-01A-11D-2136-08 TCGA-DW-7839-10A-01D-2136-08 TT TT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20 59a27c03-2a9d-4978-81e0-94d09e0e5d43 ERBB2,NS,carcinoma,0 ERBB2 exon19 c.T2264C p.L755P AAGTGTTGAGGGA . 71.0 45.0 88.0 0.0 . 0 0 0 0 0