Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TRIT1	54802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	40307511	40307511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	TRIT1-91	NM_017646	exon11	c.A1309G	p.I437V	TTTCTATGGTGTT	.	249	99	259	0	.	18	14	4	0	0
MIER1	57708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	67423741	67423741	+	Splice_Site	SNP	G	G	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	MIER1-91	NM_001146111	exon6	c.232-1G>C	.	TATTTAGGAAGGC	.	53	15	88	0	.	0	0	0	0	0
USP33	23032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	78163088	78163088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	USP33-659	NM_015017	exon25	c.G2743T	p.V915F	GGATAACTTCAGG	.	131	47	139	1	.	18	7	11	0	0
ZNHIT6	54680	broad.mit.edu	37	1	86123544	86123544	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	ZNHIT6-153	NM_017953	exon9	c.A1358C	p.K453T	AGAACTTTCATGT	.	155	5	186	0	.	0	0	0	0	0
ARHGAP29	9411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94668261	94668261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	ARHGAP29-296	NM_004815	exon11	c.G982T	p.A328S	ATTTTGCCTTTTT	.	77	26	100	0	.	3	0	3	0	0
KCNC4	3749	ucsc.edu	37	1	110774883	110774883	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	KCNC4-154	NM_004978	exon4	c.T1860C	p.P620P	TTCACCTGAGGCT	.	33	4	41	0	.	0	0	0	0	0
BCL9	607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	147086309	147086309	+	Silent	SNP	A	A	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	BCL9-707	NM_004326	exon6	c.A454C	p.R152R	GCCCCCAGGTCTT	.	76	30	98	0	.	2	2	0	0	0
BCL9	607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	147086367	147086367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	BCL9-707	NM_004326	exon6	c.A512G	p.K171R	CTCAGAAGACTCC	.	63	34	72	0	.	1	0	1	0	0
KPRP	448834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152733695	152733695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	KPRP-95	NM_001025231	exon2	c.G1631A	p.G544D	GTGCTGGCTGTGG	.	117	52	98	0	.	0	0	0	0	0
NID1	4811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	236195870	236195870	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NID1-154	NM_002508	exon6	c.T1368C	p.T456T	GAGGTCAGTGTTC	.	59	23	45	1	.	8	6	2	0	0
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247597496	247597496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NLRP3-674	NM_004895	exon5	c.G2419T	p.D807Y	CTGAGTGACAACG	.	121	38	116	0	.	0	0	0	0	0
DDX50	79009	broad.mit.edu;bcgsc.ca	37	10	70670998	70670998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	DDX50-91	NM_024045	exon4	c.C635T	p.P212L	GCTCACCAAAGGT	.	96	7	115	0	.	0	0	0	0	0
ECD	11319	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	74906091	74906091	+	Missense_Mutation	SNP	C	C	G	rs147908494	byfrequency;alternate_allele	TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	ECD-91	NM_001135752	exon9	c.G1070C	p.R357P	CTTTCCCGGTACT	.	40	7	37	0	C|0.999;T|0.001	7	5	2	0	0
ADK	132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	76468112	76468112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	ADK-228	NM_006721	exon11	c.T998C	p.L333P	AGCCTCTGACTGA	.	184	67	201	0	.	63	40	23	0	0
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115381720	115381720	+	Missense_Mutation	SNP	C	C	T	rs200031510		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NRAP-522	NM_001261463	exon24	c.G2677A	p.V893I	AGCCTACGTCTGT	.	147	51	164	0	C|1.000;T|0.000	0	0	0	0	0
NLRP6	171389	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	281108	281108	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NLRP6-583	NM_138329	exon4	c.G1374C	p.A458A	CAGGGCGCAGTTT	.	188	68	169	1	.	8	3	5	0	0
KCNQ1	3784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	2466713	2466713	+	Missense_Mutation	SNP	G	G	A	rs199472683		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	KCNQ1-515	NM_000218	exon1	c.G385A	p.V129I	TTCGCCGTGTGAG	.	30	10	30	1	.	0	0	0	0	0
OR1S1	219959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57982376	57982376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	OR1S1-113	NM_001004458	exon1	c.G160A	p.G54R	GTGATTGGGAACG	.	229	90	322	0	.	0	0	0	0	0
DPF2	5977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65113439	65113439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	DPF2-91	NM_006268	exon8	c.T814C	p.Y272H	AACAACTACTGTG	.	220	95	176	0	.	10	4	6	0	0
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66488565	66488565	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	SPTBN2-155	NM_006946	exon2	c.G147C	p.K49N	CAGAGCCTTAATG	.	74	37	64	0	.	0	0	0	0	0
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877707	82877707	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PCF11-23	NM_015885	exon5	c.A1768C	p.S590R	TGGCAAAGTTCCA	.	151	57	170	0	.	2	1	1	0	0
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	662534	662534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	B4GALNT3-92	NM_173593	exon14	c.C1445A	p.P482H	CTCAGCCCCGGGA	.	132	40	128	0	.	0	0	0	0	0
TMTC3	160418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	88548132	88548132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	TMTC3-91	NM_181783	exon4	c.A476G	p.Y159C	TGTCATATACCAG	.	82	30	103	0	.	0	0	0	0	0
FOXO1	2308	bcgsc.ca	37	13	41134471	41134471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	FOXO1-1295	NM_002015	exon2	c.C1157T	p.S386L	GTTAATGATGTTG	.	118	7	192	0	.	1	1	0	0	0
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31598378	31598378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	HECTD1-570	NM_015382	exon25	c.G4199T	p.G1400V	GTCGAACCCAAGC	.	267	87	306	1	.	4	4	0	0	0
PCNX	22990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	71413816	71413816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PCNX-91	NM_014982	exon2	c.G338T	p.R113M	CAACCAGGAGAAA	.	24	9	31	0	.	0	0	0	0	0
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64005696	64005696	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	HERC1-666	NM_003922	exon23	c.C4319G	p.A1440G	CATGCAGCAGTGT	.	96	33	104	0	.	0	0	0	0	0
CILP	8483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65496681	65496681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	CILP-97	NM_003613	exon6	c.T844A	p.F282I	GGGCAAACTTGAC	.	128	53	143	0	.	0	0	0	0	0
SRL	6345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4245669	4245669	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	SRL-73	NM_001098814	exon5	c.T495G	p.F165L	CTGGCCAAACTTC	.	217	154	104	0	.	0	0	0	0	0
GSG2	83903	hgsc.bcm.edu	37	17	3629036	3629036	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	GSG2-297	NM_031965	exon1	c.C1807G	p.L603V	ATTGTGCTGGAAT	.	60	3	132	0	.	0	0	0	0	0
NLK	51701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26490600	26490600	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NLK-1403	NM_016231	exon5	c.A783G	p.L261L	CATTTTACATCGA	.	46	17	59	0	.	9	3	6	0	0
COX11	1353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	53045784	53045784	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	COX11-91	NM_001162861	exon1	c.A224C	p.K75T	GAGCTCTTAGGCC	.	149	75	108	0	.	19	8	11	0	0
DDX5	1655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62500170	62500170	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	DDX5-228	NM_004396	exon4	c.A372G	p.G124G	TGGCCATCCCTGA	.	172	103	173	1	.	96	40	56	0	0
SLC9A3R1	9368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	72745286	72745286	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	SLC9A3R1-90	NM_004252	exon1	c.A301T	p.K101X	CTGCAGAAGCTCG	.	28	15	19	0	.	21	19	2	0	0
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80038618	80038618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	FASN-90	NM_004104	exon39	c.G6776A	p.S2259N	GCCAGGCTGTGGA	.	32	7	28	0	.	53	39	14	0	0
METTL4	64863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	2554953	2554953	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	METTL4-227	NM_022840	exon4	c.C544G	p.Q182E	TGTCCTGTTTTTC	.	104	61	219	0	.	0	0	0	0	0
OSBPL1A	114876	broad.mit.edu;bcgsc.ca	37	18	21819191	21819191	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	OSBPL1A-94	NM_080597	exon16	c.G1437T	p.A479A	TGACAGCGCATCA	.	68	5	88	1	.	0	0	0	0	0
PALM	5064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	746543	746543	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PALM-68	NM_002579	exon9	c.T893G	p.V298G	CCCCGGTCACAAT	.	56	19	49	0	.	21	16	5	0	0
CELF5	60680	broad.mit.edu	37	19	3293390	3293390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	CELF5-92	NM_021938	exon12	c.G1404T	p.M468I	CGGCATGAAGAGG	.	94	6	74	0	.	1	1	0	0	0
PIAS4	51588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4013072	4013072	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PIAS4-659	NM_015897	exon2	c.A179C	p.E60A	TCAAGGAGCTGTA	.	86	38	55	0	.	4	2	2	0	0
FBXW9	84261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12807385	12807385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	FBXW9-227	NM_032301	exon1	c.C11A	p.P4H	CCTAGGGGAAGCT	.	99	31	75	0	.	14	7	7	0	0
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38976604	38976604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	RYR1-100	NM_001042723	exon34	c.C5309T	p.S1770L	CCACTTCGCTGAG	.	87	41	67	0	.	0	0	0	0	0
PSG3	5671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43237192	43237192	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PSG3-92	NM_021016	exon3	c.C453A	p.I151I	GCTGGAGATGGAG	.	310	117	341	1	.	0	0	0	0	0
PPP1R15A	23645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49377875	49377875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PPP1R15A-226	NM_014330	exon2	c.G1385A	p.G462E	CCTTGGGAGAAGC	.	115	32	85	1	.	72	54	18	0	0
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32726845	32726845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	BIRC6-233	NM_016252	exon47	c.G9097A	p.G3033R	TCAGTTGGGGATG	.	116	23	138	1	.	0	0	0	0	0
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37280725	37280725	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	HEATR5B-142	NM_019024	exon17	c.G2425T	p.E809X	CACATTCAGCAAA	.	28	8	46	0	.	0	0	0	0	0
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109379713	109379713	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	RANBP2-675	NM_006267	exon20	c.T2718C	p.N906N	CATGAATAGGCTT	.	93	29	92	0	.	0	0	0	0	0
UBXN4	23190	hgsc.bcm.edu	37	2	136505919	136505919	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	UBXN4-92	NM_014607	exon2	c.T165C	p.A55A	TGTTGCTATTAAA	.	37	2	38	0	.	19	19	0	0	0
ZNF804A	91752	ucsc.edu;bcgsc.ca	37	2	185802049	185802049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	ZNF804A-163	NM_194250	exon4	c.G1926T	p.Q642H	AAAGCAGTATTTA	.	136	53	195	4	.	0	0	0	0	0
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190428768	190428768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	SLC40A1-91	NM_014585	exon7	c.C944T	p.A315V	AGGAAAGCAAGAC	.	60	25	50	1	.	19	19	0	0	0
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190428774	190428774	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	SLC40A1-91	NM_014585	exon7	c.G938C	p.G313A	GCAAGACCCATGC	.	68	28	53	0	.	25	25	0	0	0
PCBP3	54039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47333926	47333926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PCBP3-227	NM_020528	exon8	c.T662G	p.F221C	TCATTTTTGCAGG	.	100	39	78	0	.	0	0	0	0	0
VPRBP	9730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	51456171	51456171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	VPRBP-92	NM_014703	exon15	c.C3237A	p.N1079K	GTGACAGTTATAG	.	208	171	198	0	.	2	0	2	0	0
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52584609	52584609	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PBRM1-575	NM_018313	exon29	c.T4404A	p.Y1468X	GCCGGGATATGGA	.	95	68	87	0	.	2	1	1	0	0
COL8A1	1295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	99513269	99513269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	COL8A1-90	NM_001850	exon5	c.C524T	p.P175L	GCATGCCTGGGGC	.	52	44	49	0	.	3	3	0	0	0
PDIA5	10954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122821610	122821610	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PDIA5-91	NM_006810	exon5	c.T354A	p.F118L	TGCATTTCATACT	.	27	24	37	0	.	0	0	0	0	0
CSN3	1448	hgsc.bcm.edu;broad.mit.edu	37	4	71114720	71114720	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	CSN3-93	NM_005212	exon4	c.T93A	p.H31Q	GTGCCATGAGAAT	.	65	7	85	0	.	0	0	0	0	0
AFM	173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	74364944	74364944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	AFM-92	NM_001133	exon11	c.T1403C	p.F468S	AAGAGTTTGCCTG	.	49	18	66	0	.	0	0	0	0	0
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	88029422	88029422	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	AFF1-289	NM_001166693	exon11	c.A1488T	p.S496S	CAGTTCAAGTGAC	.	73	8	68	1	.	7	6	1	0	0
LEF1	51176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	109084775	109084775	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	LEF1-721	NM_001130714	exon3	c.T363G	p.N121K	GTCGTTATTCATA	.	103	40	169	0	.	1	1	0	0	0
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	155226303	155226303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	DCHS2-94	NM_017639	exon16	c.G3976T	p.V1326L	TCACTACCTCTCC	.	43	17	58	2	.	0	0	0	0	0
TRIP13	9319	broad.mit.edu	37	5	916037	916037	+	Silent	SNP	C	C	T	rs147247158		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	TRIP13-90	NM_004237	exon12	c.C1152T	p.S384S	CCTCAGCGGCCGG	.	281	7	305	0	C|1.000;T|0.000	5	5	0	0	0
FAM105A	54491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	14609077	14609077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	FAM105A-91	NM_019018	exon7	c.T848C	p.F283S	TGAGCTTCATGAT	.	222	83	217	0	.	11	5	6	0	0
NSD1	64324	bcgsc.ca	37	5	176637986	176637986	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NSD1-188	NM_022455	exon5	c.C2586T	p.S862S	TTTATCCGAGTTG	.	136	6	115	0	.	1	1	0	0	0
TXNDC5	81567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7889004	7889004	+	Silent	SNP	A	A	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	TXNDC5-90	NM_030810	exon7	c.T897G	p.T299T	CGCTCCAGTCTCT	.	275	114	250	0	.	27	19	8	0	0
HCRTR2	3062	broad.mit.edu	37	6	55039406	55039406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	HCRTR2-525	NM_001526	exon1	c.G21T	p.E7D	ATTGGAGGACTCC	.	117	5	125	0	.	0	0	0	0	0
LIN28B	389421	broad.mit.edu	37	6	105405976	105405976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	LIN28B-90	NM_001004317	exon2	c.G13A	p.G5R	TCAGGCGGGGCTA	.	116	4	120	0	.	0	0	0	0	0
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	2963967	2963967	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	CARD11-870	NM_032415	exon15	c.T1840A	p.S614T	TGGAGGAGGGTCC	.	81	28	86	1	.	0	0	0	0	0
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	108112970	108112970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PNPLA8-135	NM_001256008	exon10	c.G2224A	p.E742K	TTTGTTCATTTCT	.	67	24	85	2	.	15	7	8	0	0
CTAGE15	441294	hgsc.bcm.edu	37	7	143270001	143270001	+	Missense_Mutation	SNP	C	C	T	rs77246673	alternate_allele	TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	.	NM_001008747	exon1	c.C1091T	p.A364V	AACAAGCATCTTT	.	58	9	46	1	C|0.500;A|0.500	3	0	3	0	0
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	35541184	35541184	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	UNC5D-96	NM_080872	exon5	c.C690T	p.T230T	TTACACCTGCATG	.	58	22	55	0	.	0	0	0	0	0
NOV	4856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	120429171	120429171	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NOV-228	NM_002514	exon2	c.G272C	p.R91P	GTGATCGCAGCGC	.	49	23	44	0	.	3	1	2	0	0
FAM135B	51059	broad.mit.edu	37	8	139151264	139151264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	FAM135B-31	NM_015912	exon18	c.G3866A	p.R1289H	CATTTGCGCAAAT	.	102	6	137	0	.	1	1	0	0	0
MLLT3	4300	broad.mit.edu	37	9	20414346	20414346	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	MLLT3-660	NM_004529	exon5	c.C498T	p.S166S	GCTACTGCTGCTG	.	73	4	69	0	.	9	9	0	0	0
RASEF	158158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	85597649	85597649	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	RASEF-280	NM_152573	exon17	c.T2166G	p.N722K	GGTTAGATTGGTA	.	273	87	252	0	.	11	7	4	0	0
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	118969850	118969850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PAPPA-77	NM_002581	exon3	c.C1594T	p.P532S	ACTTGGCCATGGG	.	74	23	96	0	.	0	0	0	0	0
ASTN2	23245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	119495750	119495750	+	Missense_Mutation	SNP	T	T	A	rs150944935	byfrequency;alternate_allele	TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	ASTN2-161	NM_014010	exon13	c.A2296T	p.I766F	GCGGGATCACCAA	.	165	16	115	0	T|1.000;C|0.000	1	1	0	0	0
AMER1	139285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	63412033	63412033	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	.	NM_152424	exon2	c.T1134C	p.D378D	CTCGTCATCATCA	.	85	7	88	0	.	1	1	0	0	0
TRMT112	51504	hgsc.bcm.edu;broad.mit.edu	37	11	64084953	64084953	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	TRMT112-90	NM_016404	exon1	c.46delG	p.V16fs	.	.	34	11	16	0	.	0	0	0	0	0
FOXO1	2308	broad.mit.edu	37	13	41134463	41134467	+	Frame_Shift_Del	DEL	CAGTT	CAGTT	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	CAGTT	CAGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	FOXO1-1295	NM_002015	exon2	c.1161_1165del	p.387_389del	TCGAAACAGTTAA	.	130	7	186	0	.	0	0	0	0	0
FOXO1	2308	hgsc.bcm.edu	37	13	41134463	41134471	+	In_Frame_Del	DEL	CAGTTAATG	CAGTTAATG	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	CAGTTAATG	CAGTTAATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	FOXO1-1295	NM_002015	exon2	c.1157_1165del	p.386_389del	.	.	142	35	207	0	.	0	0	0	0	0
NID2	22795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	52474565	52474565	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NID2-158	NM_007361	exon19	c.3843delT	p.F1281fs	.	.	61	21	72	0	.	0	0	0	0	0
RBL2	5934	broad.mit.edu	37	16	53468508	53468508	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	RBL2-841	NM_005611	exon1	c.40delC	p.P14fs	CCGCCTCCCCCTC	.	12	4	19	0	.	0	0	0	0	0
LRBA	987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	151827549	151827549	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	LRBA-157	NM_006726	exon12	c.1502delT	p.L501fs	.	.	120	36	145	0	.	0	0	0	0	0
HOXA5	3202	broad.mit.edu	37	7	27182960	27182966	+	Frame_Shift_Del	DEL	CGGCTGG	CGGCTGG	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	CGGCTGG	CGGCTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	HOXA5-514	NM_019102	exon1	c.261_267del	p.87_89del	CGTGGCCGGCTGG	.	29	8	24	0	.	0	0	0	0	0
CDH17	1015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	95158391	95158391	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	CDH17-96	NM_004063	exon15	c.1932delG	p.G644fs	.	.	76	24	81	0	.	0	0	0	0	0
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	101912417	101912418	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	GPRASP1-131	NM_001099411	exon3	c.3576_3577del	p.1192_1193del	.	.	69	52	76	0	.	0	0	0	0	0
PPP1R9B	84687	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	48226606	48226607	+	Targeted_Region	INS	-	-	G	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PPP1R9B-90	.	.	.	.	.	.	58	16	30	0	.	0	0	0	0	0
SETD2	29072	hgsc.bcm.edu;bcgsc.ca	37	3	47164376	47164377	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	SETD2-1273	NM_014159	exon3	c.1750_1751insA	p.Q584fs	.	.	95	44	102	0	.	0	0	0	0	0