Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 ATAD3A 55210 hgsc.bcm.edu 37 1 1458174 1458174 + Silent SNP C C G novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . ATAD3A-91 NM_018188 exon8 c.C945G p.A315A GAATGCCACGCTT . 40 2 28 2 . 8 8 0 0 0 ASH1L 55870 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 155317614 155317614 + Missense_Mutation SNP A A G novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . ASH1L-234 NM_018489 exon20 c.T7636C p.S2546P GGGCTGATGCCTC . 137 59 146 0 . 13 5 8 0 0 NEK7 140609 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 198231718 198231718 + Missense_Mutation SNP T T G novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . NEK7-358 NM_133494 exon4 c.T212G p.M71R ATTTAATGGATGC . 173 28 208 0 . 11 9 2 0 0 PCF11 51585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 82875304 82875304 + Missense_Mutation SNP C C T novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . PCF11-23 NM_015885 exon4 c.C563T p.P188L CCACTCCTCCAAT . 53 14 57 0 . 6 5 1 0 0 RDX 5962 hgsc.bcm.edu;broad.mit.edu 37 11 110134893 110134893 + Missense_Mutation SNP C C T novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . RDX-90 NM_001260493 exon5 c.G259A p.E87K CATCTTCAGGAAA . 55 11 50 0 . 12 11 1 0 0 PAN2 9924 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 56720460 56720460 + Silent SNP T T C novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . PAN2-702 NM_014871 exon7 c.A1203G p.P401P GGTGAGTGGGACA . 47 22 51 0 . 13 5 8 0 0 ZFC3H1 196441 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 72017888 72017888 + Nonsense_Mutation SNP A A T novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . ZFC3H1-138 NM_144982 exon23 c.T4502A p.L1501X ACCTGTAAAATTG . 218 40 243 0 . 0 0 0 0 0 PCCA 5095 ucsc.edu 37 13 100925449 100925449 + Splice_Site SNP G G A novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . PCCA-227 NM_001178004 exon12 c.915-1G>A . TATGTAGCATTTT . 42 3 41 0 . 21 0 21 0 0 TTC8 123016 bcgsc.ca 37 14 89338026 89338026 + Nonsense_Mutation SNP G G T novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . TTC8-90 NM_144596 exon12 c.G1183T p.E395X GAAGAAGAGGCAG . 133 9 132 0 . 22 22 0 0 0 THBS1 7057 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 39882095 39882095 + Silent SNP C C G novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . THBS1-653 NM_003246 exon13 c.C2016G p.P672P CGACCCCATGTAC . 48 9 48 0 . 176 145 31 0 0 MYO9A 4649 broad.mit.edu 37 15 72146822 72146822 + Missense_Mutation SNP T T C novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . MYO9A-93 NM_006901 exon35 c.A6242G p.K2081R ATGAGCTTTTCCA . 122 3 115 0 . 19 19 0 0 0 ZNF532 55205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 56586514 56586514 + Missense_Mutation SNP C C T novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . ZNF532-154 NM_018181 exon4 c.C995T p.P332L AGCAACCGGATAG . 152 61 139 0 . 6 2 4 0 0 ZFP36 7538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 39898403 39898403 + Silent SNP T T C novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . ZFP36-227 NM_003407 exon2 c.T63C p.P21P GAGCCCTGACGTG . 295 105 331 0 . 49 24 25 0 0 ZNF615 284370 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 52497088 52497088 + Missense_Mutation SNP C C A novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . ZNF615-95 NM_001199324 exon7 c.G1274T p.C425F ATGAGACAGTGCT . 78 29 64 1 . 5 2 3 0 0 IL36G 56300 bcgsc.ca 37 2 113736864 113736864 + Missense_Mutation SNP A A G novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . IL36G-91 NM_019618 exon3 c.A122G p.N41S GTCAGAACCTTGT . 74 4 88 0 . 0 0 0 0 0 ITPR1 3708 ucsc.edu 37 3 4725969 4725969 + Missense_Mutation SNP G G A novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . ITPR1-710 NM_001099952 exon29 c.G3476A p.G1159E AGGAGGGAAATAA . 22 7 18 2 . 0 0 0 0 0 DNAJC13 23317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 132184844 132184844 + Missense_Mutation SNP T T C novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . DNAJC13-272 NM_015268 exon18 c.T1898C p.L633P GACAGCTAAGTAG . 42 12 38 0 . 0 0 0 0 0 XRN1 54464 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 142141468 142141468 + Missense_Mutation SNP G G C novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . XRN1-93 NM_001042604 exon8 c.C923G p.P308R AGAAGAGGCAGTG . 118 10 99 0 . 0 0 0 0 0 PDE5A 8654 broad.mit.edu 37 4 120463679 120463679 + Missense_Mutation SNP T T C novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . PDE5A-90 NM_001083 exon10 c.A1507G p.I503V TCTGGATCCCCAA . 85 10 98 6 . 8 7 1 0 0 TCERG1 10915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 145836845 145836845 + Missense_Mutation SNP G G A novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . TCERG1-92 NM_006706 exon3 c.G385A p.A129T ACTCCAGCACTAC . 120 41 145 0 . 6 4 2 0 0 RSPH3 83861 hgsc.bcm.edu;broad.mit.edu 37 6 159414935 159414935 + Missense_Mutation SNP C C T novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . RSPH3-92 NM_031924 exon2 c.G566A p.G189E ATGTTTCCATAAT . 58 8 47 0 . 9 8 1 0 0 CAV1 857 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 116166677 116166677 + Silent SNP C C T rs201261029 TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . CAV1-946 NM_001753 exon2 c.C129T p.D43D GTACGACGCGCAC . 76 9 69 0 C|0.999;T|0.001 7 6 1 0 0 EPHB6 2051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 142568111 142568111 + Missense_Mutation SNP A A G novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . EPHB6-1489 NM_004445 exon18 c.A2752G p.M918V GACAAGATGATCC . 190 19 190 0 . 14 14 0 0 0 ATP6V0E2 155066 hgsc.bcm.edu 37 7 149571035 149571035 + Missense_Mutation SNP A A C rs145697964 TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . . NM_001100592 exon1 c.A28C p.I10L CGGCTGATCGCTT . 9 4 5 2 A|0.986;C|0.014 0 0 0 0 0 EPPK1 83481 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 144940482 144940482 + Missense_Mutation SNP A A G novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . EPPK1-25 NM_031308 exon1 c.T6940C p.Y2314H CGGTGTAGGGGTC . 336 27 352 0 . 4 4 0 0 0 NTRK2 4915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 87342656 87342656 + Missense_Mutation SNP C C G novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . NTRK2-1404 NM_001018065 exon9 c.C941G p.A314G AACCAGCGCTTCA . 87 33 94 0 . 35 25 10 0 0 CYLC2 1539 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 9 105767702 105767702 + Missense_Mutation SNP T T A rs2298052 byfrequency;alternate_allele TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . CYLC2-91 NM_001340 exon5 c.T789A p.D263E GAAAGATGCAAAG . 70 14 71 0 T|0.972;C|0.028 0 0 0 0 0 FBXW5 54461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 139837319 139837319 + Missense_Mutation SNP A A C novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . FBXW5-226 NM_018998 exon4 c.T428G p.F143C TGGGAGAACTGGG . 186 22 197 1 . 96 67 29 0 0 EXD3 54932 hgsc.bcm.edu 37 9 140247165 140247165 + Missense_Mutation SNP G G C novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . EXD3-90 NM_017820 exon11 c.C944G p.T315R GCGGCCGTGACTG . 15 7 7 2 . 4 1 3 0 0 ATP1B1 481 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 169076130 169076130 + Frame_Shift_Del DEL G G - novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . ATP1B1-540 NM_001677 exon1 c.63delG p.K21fs . . 42 10 44 0 . 0 0 0 0 0 NOB1 28987 broad.mit.edu 37 16 69782978 69782980 + In_Frame_Del DEL TCC TCC - novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 TCC TCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . NOB1-90 NM_014062 exon6 c.567_569del p.189_190del TTTTCTTCCTCCT . 158 5 175 0 . 0 0 0 0 0 ZNF440 126070 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 11943483 11943485 + In_Frame_Del DEL GTT GTT - novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 GTT GTT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . ZNF440-68 NM_152357 exon4 c.1492_1494del p.498_498del . . 45 18 81 0 . 0 0 0 0 0 KCNG2 26251 broad.mit.edu 37 18 77623691 77623692 + In_Frame_Ins INS - - GGC rs71338073 TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . KCNG2-90 NM_012283 exon1 c.24_25insGGC p.P8delinsPG CTCCCCGGGCGGC . 10 6 10 0 -|0.657;GGC|0.343 0 0 0 0 0 MSH3 4437 broad.mit.edu 37 5 79950727 79950728 + In_Frame_Ins INS - - CAGCGCCCC novel TCGA-BQ-7050-01A-11D-1961-08 TCGA-BQ-7050-11A-01D-1961-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4b6b349c-fb1d-44a6-abcf-da2951066a9b ecae3b13-cf72-4058-8385-cb3bf34bec83 . MSH3-661 NM_002439 exon1 c.181_182insCAGCGCCCC p.A61delinsAAPP GCGGCCGCAGCGC . 10 5 10 0 . 0 0 0 0 0