Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
EMC1	23065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19566346	19566346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	.	NM_001271427	exon8	c.A920G	p.Y307C	GTTCCATAATGGT	.	81	28	91	0	.	12	5	7	0	0
LRRC8D	55144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90399759	90399759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	LRRC8D-92	NM_018103	exon3	c.T1132A	p.F378I	TATGGCTTTATCT	.	143	49	167	1	.	12	9	3	0	0
GFI1	2672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	92948601	92948601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	GFI1-514	NM_005263	exon3	c.A118G	p.S40G	AAGTGCTGTCTGC	.	55	22	76	0	.	0	0	0	0	0
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94506770	94506770	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ABCA4-162	NM_000350	exon23	c.A3517T	p.S1173C	CCTCACTGCCTTT	.	60	19	83	1	.	0	0	0	0	0
TTF2	8458	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	117633172	117633172	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TTF2-91	NM_003594	exon15	c.A2515T	p.K839X	CAGCGTAAATTTC	.	57	13	69	0	.	3	3	0	0	0
NBPF9	400818	broad.mit.edu	37	1	144823878	144823878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	.	.	.	.	.	GATGTTATTCAAC	.	53	4	47	0	.	0	0	0	0	0
SCYL3	57147	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169824950	169824950	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	SCYL3-361	NM_181093	exon12	c.T1461A	p.T487T	TAAAAGAGTATTG	.	51	20	53	0	.	0	0	0	0	0
DNM3	26052	hgsc.bcm.edu;broad.mit.edu	37	1	171810797	171810797	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	DNM3-90	NM_001136127	exon1	c.A1C	p.M1L	GGCAAGATGGGGA	.	28	11	16	0	.	0	0	0	0	0
NPL	80896	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	182775301	182775301	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	NPL-92	NM_001200052	exon5	c.G164C	p.G55A	GAGAAGGCCTGTC	.	85	13	77	0	.	19	14	5	0	0
TPR	7175	broad.mit.edu;bcgsc.ca	37	1	186324772	186324772	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TPR-228	NM_003292	exon16	c.A2017T	p.K673X	CCTGTTTAAGGGC	.	147	10	125	0	.	0	0	0	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61829643	61829643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ANK3-107	NM_020987	exon37	c.A10996G	p.T3666A	CTACAGTGGTGTC	.	69	32	70	0	.	0	0	0	0	0
SFTPD	6441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	81702148	81702148	+	Silent	SNP	G	G	C	rs2077117	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	SFTPD-91	NM_003019	exon4	c.C429G	p.P143P	ACCTTTGGGCCCA	.	59	22	74	0	.	0	0	0	0	0
ADD3	120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	111878343	111878343	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ADD3-157	NM_019903	exon6	c.568-2A>G	.	TTTTCCAGGTGAA	.	82	35	102	0	.	0	0	0	0	0
MICALCL	84953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	12316190	12316190	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MICALCL-91	NM_032867	exon3	c.C1212T	p.D404D	CAAAGACAAATCT	.	181	65	238	0	.	0	0	0	0	0
TTC17	55761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	43418965	43418965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TTC17-95	NM_018259	exon7	c.C842A	p.A281D	CTGATGCTGCTGT	.	270	122	276	2	.	22	12	10	0	0
OR5T3	390154	broad.mit.edu;bcgsc.ca	37	11	56019938	56019938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	OR5T3-68	NM_001004747	exon1	c.C263T	p.P88L	ACAACCCCATGTA	.	99	28	112	0	.	0	0	0	0	0
OR8U1	219417	broad.mit.edu;bcgsc.ca	37	11	56143937	56143937	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	OR8U1-72	NM_001005204	exon1	c.G838C	p.V280L	TACACAGTGATCA	.	280	10	317	0	.	0	0	0	0	0
MALAT1	378938	ucsc.edu;bcgsc.ca	37	11	65267784	65267784	+	RNA	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	.	.	.	.	.	AGTAATTACCAAC	.	35	5	79	0	.	55	48	7	0	0
C1QTNF5	114902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119210071	119210071	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	C1QTNF5-90	NM_015645	exon15	c.C702G	p.S234S	CCAGTCGGAGTAC	.	75	26	79	0	.	98	66	32	0	0
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12302076	12302076	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	LRP6-661	NM_002336	exon14	c.G3006A	p.V1002V	CACAACCACAGTA	.	262	115	282	0	.	1	0	1	0	0
C12orf54	121273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48888593	48888593	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	C12orf54-90	NM_152319	exon8	c.T255C	p.P85P	AAGGCCTCCAGAT	.	183	75	186	0	.	0	0	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49437679	49437679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MLL2-612	NM_003482	exon22	c.T5291C	p.L1764P	TCCTCCAGTTTGC	.	119	38	147	0	.	0	0	0	0	0
CNOT2	4848	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	70704758	70704758	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	CNOT2-226	NM_001199302	exon4	c.C132T	p.Y44Y	GTACTACAGCCAG	.	80	20	87	0	.	19	9	10	0	0
EPSTI1	94240	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	43462629	43462629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	EPSTI1-91	NM_001002264	exon13	c.G990T	p.E330D	TATTTTCTCATAT	.	149	57	156	2	.	1	1	0	0	0
POTEG	404785	broad.mit.edu;bcgsc.ca	37	14	19553567	19553567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	POTEG-1	NM_001005356	exon1	c.G151A	p.D51N	CACGACGATTCTG	.	1334	50	1420	1	.	0	0	0	0	0
NFKBIA	4792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35872504	35872504	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	NFKBIA-721	NM_020529	exon3	c.T399C	p.A133A	ACAGCCAGCTCCC	.	139	7	151	1	.	137	121	16	0	0
KLHDC1	122773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50196254	50196254	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	KLHDC1-91	NM_172193	exon8	c.C698G	p.T233S	CCTGGACTTGGTC	.	61	24	80	0	.	0	0	0	0	0
ATP10A	57194	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	25959142	25959142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ATP10A-139	NM_024490	exon10	c.G2023T	p.D675Y	AGTTGTCCGCCTG	.	50	14	63	1	.	0	0	0	0	0
GABRG3	2567	broad.mit.edu	37	15	27777965	27777965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	.	NM_033223	exon10	c.T1342C	p.F448L	CGGGTCTTTTTCC	.	60	3	65	0	.	0	0	0	0	0
MESDC2	23184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	81282037	81282037	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MESDC2-90	NM_015154	exon1	c.C96T	p.C32C	GGCCGCGCAGGAC	.	68	33	64	0	.	22	10	12	0	0
PAGR1	79447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	29830999	29830999	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	.	NM_024516	exon3	c.C689G	p.S230W	TGGACTCGGAGGA	.	113	23	147	1	.	41	31	10	0	0
ABCC12	94160	broad.mit.edu	37	16	48180262	48180262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ABCC12-93	NM_033226	exon1	c.A74G	p.Y25C	GGGTCATATCTTT	.	148	5	141	0	.	0	0	0	0	0
ZNF423	23090	broad.mit.edu;ucsc.edu	37	16	49670868	49670868	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ZNF423-228	NM_015069	exon4	c.A2195T	p.K732M	GACACCTTGGAGT	.	49	6	63	0	.	3	3	0	0	0
MAF	4094	hgsc.bcm.edu	37	16	79633040	79633040	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MAF-1270	NM_001031804	exon1	c.G760C	p.G254R	GCAGGCCGCCGGC	.	6	4	2	0	.	81	45	36	0	0
GFAP	2670	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	42987523	42987523	+	Missense_Mutation	SNP	G	G	C	rs9908084	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	GFAP-516	NM_001131019	exon8	c.C1277G	p.T426R	GGCGGCGTTCCAT	.	149	48	158	1	G|0.911;A|0.089	0	0	0	0	0
HSF5	124535	broad.mit.edu;bcgsc.ca	37	17	56565509	56565509	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	HSF5-71	NM_001080439	exon1	c.C127T	p.Q43X	GCGGCTGATCGAT	.	35	18	38	0	.	0	0	0	0	0
GPR142	350383	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72368139	72368139	+	Silent	SNP	C	C	A	rs143074832	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	GPR142-93	NM_181790	exon4	c.C789A	p.P263P	CCACCCCCTGCAC	.	51	9	45	0	C|0.999;T|0.001	0	0	0	0	0
RNF157	114804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74158077	74158077	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	RNF157-228	NM_052916	exon10	c.G799T	p.E267X	CGTCTTCAGCCAC	.	67	31	89	0	.	0	0	0	0	0
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76115385	76115385	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TMC6-90	NM_001127198	exon14	c.C1804G	p.L602V	AGGTCAGAGTCTG	.	100	31	130	0	.	0	0	0	0	0
LGI4	163175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	35617832	35617832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	LGI4-91	NM_139284	exon7	c.C718A	p.P240T	CGAAGGGCTGTGC	.	334	26	87	0	.	4	4	0	0	0
CYP1B1	1545	hgsc.bcm.edu;broad.mit.edu	37	2	38302357	38302357	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	CYP1B1-515	NM_000104	exon2	c.C175G	p.L59V	CGATCAGTGGCCA	.	12	6	18	0	.	10	5	5	0	0
BOLA3	388962	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	74362686	74362686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	BOLA3-90	NM_001035505	exon3	c.G269T	p.R90I	CAAGGTCTTAAGC	.	105	33	131	1	.	32	16	16	0	0
WDR33	55339	hgsc.bcm.edu	37	2	128474756	128474756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	WDR33-90	NM_018383	exon17	c.C2842T	p.P948S	GTCCGGGGTTCAG	.	30	11	29	0	.	23	9	14	0	0
WDR33	55339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128526506	128526506	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	WDR33-90	NM_018383	exon4	c.273+1G>T	.	TACTTACATCATT	.	126	48	142	0	.	0	0	0	0	0
RBM45	129831	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178977555	178977555	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	RBM45-22	NM_152945	exon1	c.C282T	p.N94N	CCCCAACGACACC	.	55	7	88	0	.	5	2	3	0	0
ZNF335	63925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44579218	44579218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ZNF335-94	NM_022095	exon21	c.A3206G	p.H1069R	CTTGAGTGCTGTG	.	229	25	256	0	.	5	5	0	0	0
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	50701575	50701575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ZFP64-155	NM_199427	exon9	c.C1459T	p.R487W	GCAGCCGGCTGTG	.	145	37	134	1	.	4	1	3	0	0
ZBTB46	140685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62421455	62421455	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ZBTB46-154	NM_025224	exon2	c.G656C	p.G219A	ACGTCTCCAGGCC	.	59	23	84	0	.	4	3	1	0	0
KRTAP27-1	643812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31709825	31709825	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	KRTAP27-1-24	NM_001077711	exon1	c.C162T	p.C54C	TTCATTGCAGGTT	.	145	50	150	0	.	0	0	0	0	0
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	32638551	32638551	+	Silent	SNP	G	G	A	rs202182190		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TIAM1-724	NM_003253	exon5	c.C738T	p.N246N	CCCCCCGTTTGCT	.	147	48	157	0	G|0.999;A|0.000	0	0	0	0	0
XKR3	150165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	17280836	17280836	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	XKR3-92	NM_175878	exon3	c.C414A	p.I138I	CTTTGTGATGCTA	.	123	54	152	2	.	0	0	0	0	0
SMARCB1	6598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	24145544	24145544	+	Missense_Mutation	SNP	C	C	T	rs137986695		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	SMARCB1-2699	NM_003073	exon5	c.C563T	p.P188L	TGGTCCCCATCCG	.	114	10	127	0	.	147	142	5	0	0
DRG1	4733	hgsc.bcm.edu;broad.mit.edu	37	22	31799189	31799189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	DRG1-90	NM_004147	exon3	c.A341G	p.Q114R	AGATCCAGGTGAG	.	52	3	60	0	.	0	0	0	0	0
C1QTNF6	114904	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37578392	37578392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	C1QTNF6-90	NM_182486	exon3	c.G673A	p.E225K	TGCGCTCGCTGGG	.	42	10	25	0	.	11	7	4	0	0
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	64084893	64084893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	PRICKLE2-95	NM_198859	exon8	c.T2369C	p.F790S	CCTAGGAAATAGC	.	84	39	82	0	.	1	0	1	0	0
DBR1	51163	broad.mit.edu	37	3	137892448	137892448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	DBR1-90	NM_016216	exon2	c.A218G	p.K73R	GGAGCCTTTTTCT	.	170	4	194	1	.	7	7	0	0	0
SCARNA7	677767	ucsc.edu;bcgsc.ca	37	3	160232961	160232961	+	RNA	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	.	.	.	.	.	TAATATACATATT	.	48	10	42	0	.	1	1	0	0	0
SLC2A2	6514	broad.mit.edu;bcgsc.ca	37	3	170723087	170723087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	SLC2A2-515	NM_000340	exon7	c.C950T	p.S317F	ATTCCGGAAAATT	.	151	9	178	0	.	0	0	0	0	0
PLD1	5337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	171394619	171394619	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	PLD1-660	NM_002662	exon18	c.C2001T	p.F667F	GTCAATGAAATCT	.	47	19	39	0	.	0	0	0	0	0
SEL1L3	23231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	25806261	25806261	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	.	NM_015187	exon10	c.T1678A	p.F560I	TCAGAAAGGGGAC	.	55	23	55	0	.	4	4	0	0	0
ACSL1	2180	broad.mit.edu;ucsc.edu	37	4	185724472	185724472	+	Splice_Site	SNP	A	A	T	rs201598489	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ACSL1-92	NM_001995	exon3	c.195+2T>A	.	CCACTCACCGCCA	.	12	8	13	0	.	36	0	36	0	0
FAM149A	25854	hgsc.bcm.edu	37	4	187088232	187088232	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	FAM149A-90	NM_001006655	exon11	c.C1275G	p.S425R	GCCCAGCACAACC	.	37	2	43	0	.	47	47	0	0	0
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	72151675	72151675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TNPO1-228	NM_002270	exon4	c.G280A	p.G94S	CCAAATGGTGTAA	.	81	20	95	0	.	9	7	2	0	0
FGF1	2246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141974869	141974869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	FGF1-947	NM_001257209	exon4	c.G454T	p.V152F	AAGAGACTGGCAG	.	105	36	104	0	.	0	0	0	0	0
KIF13A	63971	broad.mit.edu;bcgsc.ca	37	6	17783900	17783900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	KIF13A-137	NM_001105566	exon29	c.C3521T	p.P1174L	AGAACTGGTATGT	.	8	4	28	0	.	3	1	2	0	0
XPO5	57510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43541219	43541219	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	XPO5-271	NM_020750	exon2	c.C225G	p.V75V	TTACTTGACAACG	.	433	223	84	0	.	2	0	2	0	0
CDC5L	988	broad.mit.edu;bcgsc.ca	37	6	44390390	44390390	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	CDC5L-229	NM_001253	exon10	c.T1248C	p.P416P	GACTCCTTCTAAT	.	1017	39	192	0	.	0	0	0	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47251682	47251682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TNFRSF21-227	NM_014452	exon3	c.A1235G	p.N412S	TGGCCATTGCAGT	.	254	4	131	0	.	0	0	0	0	0
LATS1	9113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	150005370	150005370	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	LATS1-992	NM_001270519	exon4	c.C855A	p.I285I	TCGGGAGATTACG	.	172	77	179	0	.	4	0	4	0	0
ESR1	2099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152201893	152201893	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ESR1-1042	NM_000125	exon3	c.A747G	p.G249G	AGTGGGAATGATG	.	41	13	52	0	.	0	0	0	0	0
MYCT1	80177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	153043198	153043198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MYCT1-91	NM_025107	exon2	c.G518T	p.C173F	TGCAATGTCCACC	.	103	46	117	0	.	4	4	0	0	0
IPCEF1	26034	broad.mit.edu	37	6	154521109	154521109	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	IPCEF1-90	NM_001130699	exon11	c.G603C	p.L201L	ATTTTCCAGGGAA	.	110	3	117	0	.	0	0	0	0	0
TTLL2	83887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	167755036	167755036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TTLL2-92	NM_031949	exon3	c.G1648T	p.D550Y	GCTCCAGATCCCC	.	135	51	142	0	.	0	0	0	0	0
TBL2	26608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	72988278	72988278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TBL2-90	NM_012453	exon3	c.C436T	p.P146S	AGTCAGGGCTGAA	.	89	27	110	0	.	0	0	0	0	0
MFHAS1	9258	hgsc.bcm.edu	37	8	8750559	8750559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MFHAS1-90	NM_004225	exon1	c.A10G	p.M4V	TGTCCATCCCAGC	.	15	5	3	0	.	0	0	0	0	0
MTUS1	57509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	17581310	17581310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MTUS1-92	NM_001001924	exon4	c.T2320C	p.S774P	CCCATGACGACTG	.	137	59	235	1	.	3	1	2	0	0
TGFBR1	7046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	101894937	101894937	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TGFBR1-954	NM_004612	exon3	c.C490G	p.P164A	GAGGACCCTTCAT	.	137	43	161	0	.	9	7	2	0	0
DAB2IP	153090	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	124522288	124522288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	DAB2IP-91	NM_032552	exon6	c.G656T	p.G219V	CCACGGGCAAGCT	.	72	18	72	0	.	14	9	5	0	0
COQ4	51117	bcgsc.ca	37	9	131095814	131095814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	COQ4-90	NM_016035	exon7	c.C688A	p.P230T	AGAGCCCCATGTG	.	105	40	122	3	.	86	50	36	0	0
NUP214	8021	bcgsc.ca	37	9	134004848	134004848	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	NUP214-1131	NM_005085	exon4	c.G576T	p.T192T	TTCCACGGTAGCA	.	193	14	181	2	.	6	5	1	0	0
KCTD4	386618	broad.mit.edu	37	13	45768267	45768269	+	In_Frame_Del	DEL	TTA	TTA	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	TTA	TTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	KCTD4-90	NM_198404	exon2	c.434_436del	p.145_146del	TATCTGTTATTTC	.	154	15	167	0	.	0	0	0	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42444915	42444915	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	PLA2G4F-94	NM_213600	exon7	c.572delG	p.G191fs	CCATCTCCCCGGA	.	6	2	4	0	.	0	0	0	0	0
SERPINB11	89778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	61379816	61379816	+	Targeted_Region	DEL	A	A	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	SERPINB11-67	.	.	.	.	.	.	127	50	131	0	.	0	0	0	0	0
BCL2L11	10018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	111921708	111921716	+	Frame_Shift_Del	DEL	AGGTATTTT	AGGTATTTT	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	AGGTATTTT	AGGTATTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	BCL2L11-1083	NM_138621	exon4	c.499_505del	p.167_169del	.	.	58	13	97	0	.	0	0	0	0	0
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	230701700	230701702	+	Frame_Shift_Del	DEL	ACT	ACT	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	ACT	ACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TRIP12-572	NM_004238	exon5	c.1008_1008del	p.336_336del	.	.	47	23	54	0	.	0	0	0	0	0
MKL1	57591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	40816560	40816562	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MKL1-948	NM_020831	exon11	c.900_902del	p.300_301del	.	.	97	39	139	0	.	0	0	0	0	0
STOX2	56977	broad.mit.edu	37	4	184931856	184931856	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	STOX2-22	NM_020225	exon3	c.1865delA	p.E622fs	ATAAGGAGGACCA	.	70	8	67	0	.	0	0	0	0	0
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	131007378	131007379	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	FNIP1-92	NM_133372	exon14	c.2758_2759del	p.920_920del	.	.	144	61	139	0	.	0	0	0	0	0
UBR2	23304	broad.mit.edu	37	6	42611951	42611951	+	Splice_Site	DEL	G	G	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	UBR2-94	NM_015255	exon19	c.2098-1G>-	.	AAAAAAGACAGGT	.	1177	6	159	0	.	0	0	0	0	0
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	70255838	70255838	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	AUTS2-92	NM_015570	exon19	c.3636delT	p.P1212fs	.	.	45	13	45	0	.	0	0	0	0	0
CUX1	1523	broad.mit.edu	37	7	101892133	101892135	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	CUX1-160	NM_001202543	exon24	c.4362_4364del	p.1454_1455del	CAGCAACAGCAGC	.	6	2	6	0	.	0	0	0	0	0
CLTA	1211	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	36211662	36211662	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	CLTA-90	NM_007096	exon7	c.638delG	p.R213fs	.	.	111	41	153	0	.	0	0	0	0	0
ENTPD5	957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	74443764	74443765	+	Splice_Site	INS	-	-	A	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ENTPD5-91	NM_001249	exon9	c.518-2->T	.	.	.	100	38	144	0	.	0	0	0	0	0