Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CDK11A	728642	broad.mit.edu	37	1	1638914	1638914	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CDK11A-14	NM_024011	exon11	c.C1179A	p.P393P	GGAGTCGGGCACA	.	29	15	22	0	.	29	23	6	0	0
NPHP4	261734	broad.mit.edu	37	1	5935029	5935029	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	NPHP4-515	NM_015102	exon21	c.C2949T	p.A983A	CAGCGTGGCGTGG	.	59	6	55	0	.	9	8	1	0	0
RPS6KA1	6195	broad.mit.edu;bcgsc.ca	37	1	26885310	26885310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	RPS6KA1-510	NM_001006665	exon13	c.T1124C	p.I375T	CAGGCATCCCCCC	.	97	5	105	1	.	0	0	0	0	0
CGN	57530	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151509762	151509762	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CGN-93	NM_020770	exon21	c.C3552T	p.Y1184Y	TGTCTACGATCCC	.	64	18	66	0	.	13	10	3	0	0
ADAR	103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154562826	154562826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	ADAR-157	NM_001111	exon7	c.A2330G	p.K777R	TGCTTCTTGCTGT	.	129	22	117	0	.	58	49	9	0	0
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201034981	201034981	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CACNA1S-94	NM_000069	exon22	c.C2838A	p.G946G	CTGGACGCCGATG	.	30	10	40	0	.	0	0	0	0	0
SVIL	6840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	29811367	29811367	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	SVIL-96	NM_021738	exon16	c.C3361G	p.P1121A	TGCTGGGTGAGTC	.	86	29	101	0	.	8	8	0	0	0
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	34648076	34648076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	PARD3-92	NM_001184792	exon14	c.A2066G	p.E689G	CTTACCTCATTGC	.	161	47	171	0	.	0	0	0	0	0
TMEM26	219623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	63212836	63212836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	TMEM26-90	NM_178505	exon1	c.G4A	p.E2K	GTCCCTCCATGCT	.	75	28	71	0	.	3	1	2	0	0
DNAJB12	54788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74100871	74100871	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	DNAJB12-226	NM_017626	exon4	c.A617T	p.Q206L	CCGAACTGGTCAT	.	69	24	79	0	.	36	22	14	0	0
CTSD	1509	broad.mit.edu;bcgsc.ca	37	11	1776167	1776167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CTSD-90	NM_001909	exon6	c.C796T	p.R266C	CCTTGCGGGTGAC	.	105	31	75	0	.	4322	2822	1498	0	2
NRXN2	9379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64453122	64453122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	NRXN2-232	NM_015080	exon6	c.G1148A	p.R383H	ACCTGGCGCAGGT	.	124	40	112	0	.	0	0	0	0	0
ROBO4	54538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	124765531	124765531	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	ROBO4-92	NM_019055	exon6	c.C858T	p.T286T	AGTCTGGGTCCTG	.	117	36	89	0	.	0	0	0	0	0
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12334210	12334210	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	LRP6-661	NM_002336	exon6	c.A1140C	p.E380D	CCTCACTTCATCA	.	169	59	179	1	.	3	0	3	0	0
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	67691215	67691215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CAND1-516	NM_018448	exon5	c.C520A	p.P174T	TTCCATCCTTCAA	.	154	35	141	0	.	17	10	7	0	0
TDG	6996	hgsc.bcm.edu	37	12	104359839	104359839	+	Splice_Site	SNP	G	G	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	TDG-661	NM_003211	exon1	c.23+1G>C	.	GGGCAGGTAATAC	.	17	2	11	0	.	0	0	0	0	0
CIT	11113	broad.mit.edu	37	12	120150415	120150415	+	Silent	SNP	G	G	C	rs147828404	alternate_allele	TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CIT-399	NM_001206999	exon36	c.C4665G	p.L1555L	ATTTGCGAGTTCG	.	84	4	109	0	G|1.000;A|0.000	1	1	0	0	0
CHD8	57680	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21862588	21862588	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CHD8-277	NM_001170629	exon30	c.A5447T	p.E1816V	TCATATTCCACAC	.	26	9	31	0	.	6	2	4	0	0
NR2F2	7026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	96875635	96875635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	NR2F2-228	NM_021005	exon1	c.A301G	p.S101G	TGCAAGAGCTTCT	.	35	14	29	0	.	88	45	43	0	0
CAMKK1	84254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3788981	3788981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CAMKK1-334	NM_032294	exon2	c.A1G	p.M1V	CCTCCATTGCTTC	.	99	17	56	0	.	3	2	1	0	0
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4451584	4451584	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	MYBBP1A-92	NM_014520	exon12	c.G1578A	p.T526T	GAACTGCGTGCTG	.	198	111	136	0	.	27	6	21	0	0
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39140321	39140321	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	.	NM_182497	exon3	c.A205T	p.N69Y	GACTATTACAACT	.	228	126	166	1	.	0	0	0	0	0
ADAM11	4185	broad.mit.edu;bcgsc.ca	37	17	42855164	42855164	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	ADAM11-227	NM_002390	exon23	c.C2003G	p.P668R	GCCTGCCAGCTTC	.	72	48	38	0	.	1	1	0	0	0
GPRC5C	55890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72436053	72436053	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	GPRC5C-525	NM_022036	exon2	c.T273A	p.S91S	CCGCTCTGGGGCG	.	178	98	95	0	.	250	57	193	0	0
POTEC	388468	broad.mit.edu	37	18	14513675	14513675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	POTEC-3	NM_001137671	exon10	c.A1519G	p.K507E	TCATTTTCTTTTC	.	110	4	95	1	.	0	0	0	0	0
FZR1	51343	broad.mit.edu;bcgsc.ca	37	19	3525916	3525916	+	Silent	SNP	G	G	A	rs201664307		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	FZR1-227	NM_001136197	exon2	c.G120A	p.S40S	GTCCTCGCCCAGC	.	39	11	30	0	G|0.999;A|0.001	18	12	6	0	0
ZNF493	284443	hgsc.bcm.edu	37	19	21606636	21606636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	ZNF493-516	NM_001076678	exon4	c.T1175C	p.L392P	CAACCCTTACTAA	.	68	4	72	0	.	6	5	1	0	0
C2orf44	80304	bcgsc.ca	37	2	24261378	24261378	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	C2orf44-154	NM_025203	exon2	c.C987G	p.T329T	CGTCATGGTAACT	.	89	5	75	0	.	1	1	0	0	0
KCNG3	170850	ucsc.edu	37	2	42720017	42720017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	KCNG3-90	NM_172344	exon1	c.C625T	p.R209W	TGCTCCGGTCATC	.	41	4	28	0	.	0	0	0	0	0
DCTN1	1639	broad.mit.edu	37	2	74604848	74604848	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	DCTN1-95	NM_001135040	exon3	c.G285C	p.Q95H	AAATACCTGGATC	.	121	3	103	0	.	0	0	0	0	0
APMAP	57136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	24944513	24944513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	.	NM_020531	exon9	c.G1187A	p.G396E	AGGTGCCCATCGT	.	139	24	109	0	.	153	109	44	0	0
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	46254125	46254125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	NCOA3-229	NM_181659	exon5	c.G257T	p.G86V	TTTCAGGAAAAAC	.	105	45	63	1	.	0	0	0	0	0
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	41459172	41459172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	DSCAM-101	NM_001271534	exon22	c.C3893T	p.P1298L	ATCCATGGAGTAG	.	137	14	165	0	.	0	0	0	0	0
SNAP29	9342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21237785	21237785	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	SNAP29-278	NM_004782	exon4	c.G547C	p.A183P	GGTTCTGCCATGA	.	327	100	385	1	.	42	19	23	0	0
HIC2	23119	hgsc.bcm.edu	37	22	21799620	21799620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	HIC2-703	NM_015094	exon3	c.T436C	p.F146L	AAGCCCTTTGGCT	.	33	2	39	0	.	0	0	0	0	0
KIAA1407	57577	broad.mit.edu	37	3	113724781	113724781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	KIAA1407-92	NM_020817	exon10	c.A1442G	p.K481R	GGAGGCTTTTCCC	.	177	4	136	0	.	9	9	0	0	0
HPS3	84343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	148872995	148872995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	HPS3-158	NM_032383	exon8	c.A1502G	p.K501R	TGTACAAAGAGAT	.	96	29	102	0	.	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	40440532	40440532	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	RBM47-25	NM_001098634	exon4	c.G379C	p.A127P	GCACTGCGCGCTT	.	54	9	59	1	.	44	28	16	0	0
STPG2	285555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	98633942	98633942	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	.	NM_174952	exon10	c.T1228A	p.L410I	TCCTTAAAACAGG	.	112	39	136	0	.	2	0	2	0	0
DNAH5	1767	hgsc.bcm.edu	37	5	13727614	13727614	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	DNAH5-182	NM_001369	exon71	c.12033+2T>C	.	CTTTTTACCTGGG	.	60	3	45	0	.	0	0	0	0	0
DMXL1	1657	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	118525502	118525502	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	DMXL1-92	NM_005509	exon29	c.C7235G	p.P2412R	CGGCACCAGTAAG	.	146	40	207	0	.	9	2	7	0	0
CCNG1	900	bcgsc.ca	37	5	162868217	162868217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CCNG1-725	NM_199246	exon4	c.A398G	p.D133G	TTTCAGACTTGAT	.	72	4	85	0	.	67	67	0	0	0
RAB24	53917	broad.mit.edu;bcgsc.ca	37	5	176729807	176729807	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	RAB24-159	NM_001031677	exon3	c.G211C	p.E71Q	TGGCCTCATAGCG	.	84	4	98	0	.	47	47	0	0	0
KIAA0319	9856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	24578370	24578370	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	KIAA0319-92	NM_001168377	exon9	c.G1473C	p.L491F	GTTAGACAAGCGT	.	131	44	116	0	.	1	1	0	0	0
HLA-B	3106	ucsc.edu	37	6	31323371	31323371	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	HLA-B-90	NM_005514	exon5	c.620-2A>G	.	GGGGTCTGATGGG	.	169	1	136	0	.	9	9	0	0	0
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21737744	21737744	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	DNAH11-146	.	.	.	.	CTTGTTAGTTGCT	.	79	38	48	0	.	0	0	0	0	0
TLN1	7094	broad.mit.edu	37	9	35703618	35703618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	TLN1-609	NM_006289	exon48	c.A6413G	p.E2138G	GTGGCCTCATCTT	.	72	3	79	0	.	146	146	0	0	0
SCARNA2	677766	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109642945	109642945	+	RNA	DEL	G	G	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	.	.	.	.	.	.	.	62	18	75	0	.	0	0	0	0	0
C11orf84	144097	broad.mit.edu	37	11	63594447	63594448	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	C11orf84-90	NM_138471	exon6	c.982_983del	p.328_328del	ATCCGCGTGCGGA	.	24	7	21	0	.	0	0	0	0	0
RSPRY1	89970	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	57261323	57261323	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	RSPRY1-91	NM_133368	exon11	c.1231delA	p.N411fs	.	.	99	54	85	0	.	0	0	0	0	0
TMEM237	65062	broad.mit.edu;bcgsc.ca	37	2	202493983	202493983	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	.	NM_001044385	exon8	c.839delT	p.L280fs	AGAGCCAAAAGCA	.	28	8	36	0	.	0	0	0	0	0
BACH1	571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	30698866	30698866	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	BACH1-92	NM_206866	exon3	c.721delA	p.T241fs	.	.	113	38	92	0	.	0	0	0	0	0
CCR3	1232	broad.mit.edu	37	3	46306948	46306948	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CCR3-660	NM_178328	exon3	c.362delT	p.V121fs	ACTGGGTTTTTGG	.	431	7	341	0	.	0	0	0	0	0
RUNX2	860	broad.mit.edu	37	6	45390446	45390448	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	RUNX2-417	NM_001024630	exon3	c.175_177del	p.59_59del	CAGCAACAGCAGC	.	80	7	59	0	.	0	0	0	0	0
KAT6A	7994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	41836161	41836161	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	.	NM_001099412	exon7	c.1042delG	p.V348fs	.	.	379	105	420	0	.	0	0	0	0	0
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	17462949	17462949	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CNTLN-91	NM_017738	exon20	c.3342delT	p.N1114fs	.	.	97	29	114	0	.	0	0	0	0	0
FGL2	10875	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	76828725	76828726	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	FGL2-92	NM_006682	exon1	c.386_387insA	p.R129fs	.	.	164	33	129	0	.	0	0	0	0	0