Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 CSMD2 114784 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 34180229 34180229 + Missense_Mutation SNP C C T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . CSMD2-103 NM_052896 exon21 c.G3244A p.G1082S GTCTGCCCCCCAG . 106 71 302 0 . 0 0 0 0 0 FUBP1 8880 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 78444626 78444626 + Silent SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . FUBP1-227 NM_003902 exon1 c.C63T p.G21G ACCACCGCCGCCA . 42 27 90 1 . 0 0 0 0 0 ENSA 2029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 150601936 150601936 + Missense_Mutation SNP T T G rs148754482 byfrequency;alternate_allele TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . ENSA-90 NM_207044 exon1 c.A11C p.K4T TCTTGTTTCTGGG . 76 35 108 0 T|1.000;C|0.000 122 60 61 1 0 HORMAD1 84072 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 150689613 150689613 + Splice_Site SNP C C T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . HORMAD1-92 NM_032132 exon4 c.178+1G>A . GTATTACCATCTA . 71 25 95 0 . 0 0 0 0 0 FMO2 2327 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 171174553 171174553 + Missense_Mutation SNP C C A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . FMO2-91 NM_001460 exon7 c.C963A p.N321K GGAGAACATTGAT . 52 15 51 0 . 7 6 1 0 0 LAMB3 3914 hgsc.bcm.edu 37 1 209801450 209801450 + Missense_Mutation SNP C C G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . LAMB3-156 NM_000228 exon11 c.G1218C p.Q406H CTCTCCCTGCACA . 15 3 12 0 . 17 17 0 0 0 BMS1 9790 ucsc.edu 37 10 43315737 43315737 + Missense_Mutation SNP G G T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . BMS1-93 NM_014753 exon16 c.G2634T p.E878D GTATGAGGGTTTT . 112 6 117 0 . 128 84 44 0 0 SLC16A9 220963 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 61413807 61413807 + Missense_Mutation SNP A A G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . SLC16A9-93 NM_194298 exon5 c.T977C p.L326P TCCATAAGTAATG . 77 29 55 0 . 140 67 73 0 0 PDLIM1 9124 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 96998413 96998413 + Missense_Mutation SNP T T G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . PDLIM1-90 NM_020992 exon6 c.A715C p.S239R TAACACTTCTGAA . 66 26 64 0 . 133 54 79 0 0 DNMBP 23268 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 101646325 101646325 + Missense_Mutation SNP G G C novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . DNMBP-233 NM_015221 exon13 c.C3350G p.P1117R TTATGGGGCCCTG . 236 80 256 0 . 6 5 1 0 0 SLK 9748 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 105750528 105750528 + Missense_Mutation SNP A A G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . SLK-549 NM_014720 exon2 c.A246G p.I82M TGACATATTAGCA . 69 29 75 0 . 7 6 1 0 0 MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 1247945 1247945 + Missense_Mutation SNP C C G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . . NM_002458 exon4 c.C300G p.N100K TTGCAACTACGTG . 36 7 37 0 . 0 0 0 0 0 PRKRIR 5612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 76063689 76063689 + Missense_Mutation SNP G G C novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . PRKRIR-93 NM_004705 exon5 c.C505G p.L169V CAAATAGAGATTT . 29 21 54 0 . 9 2 7 0 0 MLL2 8085 broad.mit.edu 37 12 49436618 49436618 + Missense_Mutation SNP C C G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . MLL2-612 NM_003482 exon26 c.G5688C p.K1896N AACATCCTTGAAG . 61 3 97 0 . 8 8 0 0 0 MON2 23041 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 62959064 62959064 + Missense_Mutation SNP A A G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . MON2-514 NM_015026 exon27 c.A4080G p.I1360M AGCTATATTTGAC . 199 91 227 1 . 14 6 8 0 0 EP400 57634 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 132472272 132472272 + Missense_Mutation SNP T T A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . EP400-520 NM_015409 exon7 c.T2246A p.I749N AGCGCATTGCGGA . 45 12 74 0 . 9 9 0 0 0 EP400 57634 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 132472274 132472274 + Missense_Mutation SNP G G C novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . EP400-520 NM_015409 exon7 c.G2248C p.A750P CGCATTGCGGAGC . 47 14 82 2 . 9 9 0 0 0 LNX2 222484 bcgsc.ca 37 13 28136576 28136576 + Missense_Mutation SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . LNX2-228 NM_153371 exon5 c.C1198T p.P400S GCTCCGGAGTTCC . 134 54 174 0 . 3 3 0 0 0 KBTBD7 84078 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 41766948 41766948 + Silent SNP A A T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . KBTBD7-91 NM_032138 exon1 c.T1446A p.V482V GTTCTGAACCACT . 47 23 57 1 . 4 2 2 0 0 LECT1 11061 ucsc.edu 37 13 53313834 53313834 + Missense_Mutation SNP C C T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . LECT1-92 NM_007015 exon1 c.G3A p.M1I CTCTGTCATGTTT . 37 4 47 0 . 0 0 0 0 0 DOCK9 23348 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 99540613 99540613 + Splice_Site SNP C C T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . DOCK9-90 NM_015296 exon18 c.1980+1G>A . CACTCACCTTGGC . 224 24 227 0 . 0 0 0 0 0 FAM71D 161142 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 67688507 67688507 + Missense_Mutation SNP C C A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . FAM71D-23 NM_173526 exon7 c.C1172A p.T391N TGAGAACTGAATC . 54 11 63 0 . 0 0 0 0 0 DPF3 8110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 73238479 73238479 + Missense_Mutation SNP T T G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . DPF3-1 NM_012074 exon2 c.A155C p.N52T TAGCAGTTGTTCT . 90 38 158 1 . 0 0 0 0 0 PPP4R4 57718 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 94640864 94640864 + Missense_Mutation SNP T T C novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . PPP4R4-94 NM_058237 exon1 c.T62C p.M21T GTTACATGGAGGA . 49 11 88 1 . 0 0 0 0 0 OCA2 4948 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 28090200 28090200 + Splice_Site SNP T T A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . OCA2-135 NM_000275 exon24 c.2339-2A>T . GTTACCTAAAGTC . 59 21 74 1 . 0 0 0 0 0 ZNF609 23060 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 64966235 64966235 + Silent SNP G G T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . ZNF609-92 NM_015042 exon4 c.G1182T p.G394G CAAAGGGACCAGT . 150 55 191 0 . 11 7 4 0 0 THSD4 79875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 72063439 72063439 + Missense_Mutation SNP G G C novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . THSD4-92 NM_024817 exon16 c.G2806C p.E936Q GTCCGGGAAGTGC . 143 63 172 0 . 9 3 6 0 0 BNC1 646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 83932666 83932666 + Missense_Mutation SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . BNC1-93 NM_001717 exon4 c.C1337T p.T446M GGGGACGTCACTG . 71 27 92 0 . 4 3 1 0 0 ADAMTS17 170691 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 100871170 100871170 + Silent SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . ADAMTS17-228 NM_139057 exon3 c.C540T p.I180I GCGCCTGATCAGA . 87 47 99 0 . 0 0 0 0 0 PCSK6 5046 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 101933522 101933522 + Silent SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . PCSK6-46 . . . . GCTGACGGAGATG . 41 18 57 1 . 1 0 1 0 0 IRX6 79190 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 55360382 55360382 + Silent SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . IRX6-174 NM_024335 exon2 c.G180A p.A60A CAGTGCGCGACCG . 48 28 40 0 . 24 4 20 0 0 CDH5 1003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 66413245 66413245 + Missense_Mutation SNP A A C novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . CDH5-525 NM_001795 exon2 c.A5C p.Q2P AGATGCAGAGGCT . 268 61 231 0 . 1 1 0 0 0 PLCG2 5336 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 81922847 81922847 + Missense_Mutation SNP A A T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . PLCG2-892 NM_002661 exon10 c.A836T p.E279V TGCGTGAAACTGC . 34 10 30 0 . 3 2 1 0 0 P2RX5 5026 broad.mit.edu;bcgsc.ca 37 17 3583061 3583061 + Missense_Mutation SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . P2RX5-22 NM_002561 exon11 c.C1082T p.S361F TCCTGGGAACTGT . 32 10 47 0 . 1 0 1 0 0 TVP23C 201158 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA . 371 32 378 24 . 24 5 19 0 0 SREBF1 6720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 17722461 17722461 + Missense_Mutation SNP T T C novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . SREBF1-91 NM_001005291 exon6 c.A1024G p.S342G CCTTGCTGCCAGC . 83 34 92 0 . 28 13 15 0 0 AKAP10 11216 bcgsc.ca 37 17 19845195 19845195 + Silent SNP C C G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . AKAP10-226 NM_007202 exon6 c.G1005C p.V335V GGGATCCACCTGT . 38 4 61 0 . 15 15 0 0 0 KRTAP4-9 100132386 broad.mit.edu 37 17 39262083 39262083 + Missense_Mutation SNP A A C rs79447029 TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . . NM_001146041 exon1 c.A443C p.N148T AGCCCAACTGCTG . 46 5 36 2 A|0.500;C|0.500 0 0 0 0 0 POLG2 11232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 62486981 62486981 + Missense_Mutation SNP C C G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . POLG2-227 NM_007215 exon4 c.G901C p.E301Q GGGTTTCTATTAA . 81 39 86 0 . 8 6 2 0 0 RNF213 57674 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 78293016 78293016 + Silent SNP C C G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . RNF213-577 NM_001256071 exon17 c.C2928G p.A976A CACTGCCTACTGC . 218 79 217 0 . 15 10 5 0 0 SIRT7 51547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 79870325 79870325 + Silent SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . SIRT7-204 NM_016538 exon10 c.C1170T p.C390C TTTTGTGCAGCCC . 219 107 271 2 . 29 12 17 0 0 USP14 9097 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 163336 163336 + Missense_Mutation SNP T T G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . USP14-659 NM_001037334 exon2 c.T45G p.F15L GAAATTTGAAGGT . 24 17 35 0 . 4 0 4 0 0 EPS15L1 58513 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 16551694 16551694 + Silent SNP A A G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . EPS15L1-95 NM_021235 exon4 c.T192C p.G64G CCCTTTACCTTCT . 503 186 541 1 . 32 9 23 0 0 ELL 8178 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 18557590 18557590 + Silent SNP G G A rs200056265 TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . ELL-1082 NM_006532 exon9 c.C1500T p.P500P GGACGTGGGAACA . 37 16 69 0 G|0.999;A|0.000 9 4 5 0 0 ZNF708 7562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 21493348 21493348 + Missense_Mutation SNP A A G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . ZNF708-516 NM_021269 exon2 c.T85C p.Y29H TCCTATATAAATT . 97 46 107 1 . 1 1 0 0 0 ZNF30 90075 hgsc.bcm.edu;broad.mit.edu 37 19 35434184 35434184 + Missense_Mutation SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . ZNF30-24 NM_001099438 exon5 c.G317A p.C106Y AAAACTGTCCATC . 44 22 47 0 . 2 2 0 0 0 BCAM 4059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 45322619 45322619 + Missense_Mutation SNP C C T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . BCAM-91 NM_001013257 exon12 c.C1490T p.P497L CAATCCCCGGACG . 46 22 84 0 . 482 214 268 0 0 ZNF28 7576 ucsc.edu 37 19 53304673 53304673 + Missense_Mutation SNP A A G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . ZNF28-91 NM_006969 exon4 c.T425C p.L142S AAGCTTAATCCAA . 339 14 369 5 . 27 18 9 0 0 MIR516B1 574490 bcgsc.ca 37 19 54240106 54240106 + RNA SNP C C A rs200729527 TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . . . . . . CTCAGGCTGTGAC . 170 12 200 1 C|0.999;A|0.001 1 1 0 0 0 FCAR 2204 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 55385758 55385758 + Nonsense_Mutation SNP C C T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . FCAR-92 NM_133279 exon1 c.C13T p.Q5X CCCAAACAGACCA . 136 59 138 0 . 0 0 0 0 0 ASAP2 8853 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 9515020 9515020 + Missense_Mutation SNP G G C novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . ASAP2-90 NM_001135191 exon17 c.G1693C p.A565P CTCCAAGCTTATG . 158 60 191 1 . 10 5 5 0 0 HEATR5B 54497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 37235951 37235951 + Missense_Mutation SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . HEATR5B-142 NM_019024 exon28 c.C4325T p.S1442L GGTTTTGACTCTG . 196 83 243 0 . 10 8 2 0 0 CLASP1 23332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 122122716 122122716 + Missense_Mutation SNP A A C novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . CLASP1-91 NM_015282 exon35 c.T4031G p.F1344C GTCTTGAAGTGCT . 39 20 40 0 . 17 8 9 0 0 NFE2L2 4780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 178098800 178098800 + Missense_Mutation SNP T T C novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . NFE2L2-90 NM_006164 exon2 c.A245G p.E82G AGAAATTCACCTG . 99 41 118 0 . 61 38 23 0 0 TTN 7273 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 179550284 179550284 + Missense_Mutation SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . TTN-636 NM_001267550 exon128 c.C32353T p.H10785Y TAATGTGCAGCTT . 58 22 83 0 . 0 0 0 0 0 FN1 2335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 216289927 216289927 + Missense_Mutation SNP A A C novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . FN1-584 NM_212476 exon7 c.T926G p.V309G TCTGTGACACAGT . 224 90 267 1 . 58 34 24 0 0 GIGYF2 26058 hgsc.bcm.edu 37 2 233712220 233712220 + Missense_Mutation SNP A A C novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . GIGYF2-28 NM_001103147 exon29 c.A3686C p.Q1229P AGCAGCAGCTGCC . 34 2 28 0 . 0 0 0 0 0 BMP7 655 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 55777539 55777539 + Missense_Mutation SNP G G A rs112344257 TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . BMP7-187 NM_001719 exon3 c.C752T p.T251M TCCAGCGTCTCCA . 22 16 41 1 T|0.000;C|0.999 0 0 0 0 0 PLAC4 191585 broad.mit.edu 37 21 42551311 42551311 + Missense_Mutation SNP A A G rs201045863 TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . . NM_182832 exon1 c.T245C p.I82T GAGGGTATCCAGG . 6 2 17 0 . 0 0 0 0 0 SCN5A 6331 hgsc.bcm.edu;bcgsc.ca 37 3 38645417 38645417 + Missense_Mutation SNP G G A rs199473575 TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . SCN5A-98 NM_001160160 exon12 c.C1676T p.T559I AGTGATGTGTGGT . 67 35 77 0 . 1 1 0 0 0 PDZRN3 23024 broad.mit.edu;bcgsc.ca 37 3 73440201 73440201 + Missense_Mutation SNP C C T rs200273452 TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . PDZRN3-232 NM_015009 exon6 c.G1321A p.D441N CTTCATCGTCCGT . 386 15 417 0 . 3 3 0 0 0 ATP2C1 27032 broad.mit.edu;bcgsc.ca 37 3 130673864 130673864 + Silent SNP C C T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . ATP2C1-91 NM_001199181 exon9 c.C798T p.V266V TGTTGTCATTGGA . 51 16 61 0 . 0 0 0 0 0 AFAP1 60312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 7857226 7857226 + Missense_Mutation SNP T T G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . AFAP1-90 NM_001134647 exon4 c.A301C p.S101R CGGGGCTCAGCGG . 60 26 88 0 . 2 0 2 0 0 SMARCAD1 56916 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 95191935 95191935 + Missense_Mutation SNP A A G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . SMARCAD1-229 NM_001128429 exon11 c.A1538G p.K513R TACATAAACATGG . 123 47 164 0 . 23 9 14 0 0 MYO10 4651 ucsc.edu 37 5 16701576 16701576 + Silent SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . MYO10-3 NM_012334 exon25 c.C2928T p.C976C CTCCTCGCATGCG . 52 5 75 0 . 27 27 0 0 0 PDZD2 23037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 32108145 32108145 + Silent SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . PDZD2-563 NM_178140 exon24 c.G8424A p.L2808L ACCTCTGGTTGGG . 125 54 125 0 . 2 2 0 0 0 POLK 51426 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 74872636 74872636 + Missense_Mutation SNP A A C novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . POLK-229 NM_016218 exon6 c.A572C p.N191T ATCCCAATTTTAT . 54 24 79 0 . 11 5 6 0 0 ZNF608 57507 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 123983889 123983889 + Missense_Mutation SNP A A T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . ZNF608-229 NM_020747 exon4 c.T2188A p.S730T GTTTAGAGAGGTT . 47 21 40 1 . 3 2 1 0 0 MAML1 9794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 179192887 179192887 + Silent SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . MAML1-848 NM_014757 exon2 c.G876A p.L292L CCCCTTGGCACAG . 146 68 164 0 . 8 7 1 0 0 PRRC2A 7916 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 31595867 31595867 + Missense_Mutation SNP C C T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . PRRC2A-156 NM_004638 exon12 c.C1616T p.A539V CATCAGCCCCAAC . 136 55 159 0 . 89 52 36 0 1 C6orf226 441150 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 42858492 42858492 + Missense_Mutation SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . . NM_001008739 exon1 c.C35T p.P12L GAGGCCGGGGCCG . 86 30 128 1 . 29 14 15 0 0 PKHD1 5314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 51917922 51917922 + Missense_Mutation SNP C C T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . PKHD1-603 NM_170724 exon21 c.G2092A p.G698S ACAGGCCCGTCTC . 62 25 85 0 . 14 11 3 0 0 CLIP2 7461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 73752800 73752800 + Silent SNP A A T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . CLIP2-93 NM_032421 exon3 c.A144T p.S48S ACAGTCATCTGGA . 29 18 19 0 . 37 8 29 0 0 CHCHD3 54927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 132754922 132754922 + Missense_Mutation SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . CHCHD3-90 NM_017812 exon2 c.C149T p.S50F GCACCAGAATACC . 82 17 71 0 . 99 62 37 0 0 EXOC4 60412 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 133692515 133692515 + Missense_Mutation SNP A A G novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . EXOC4-159 NM_021807 exon17 c.A2614G p.R872G ATGTGTAGGAACA . 83 36 63 0 . 62 50 12 0 0 KIAA1549 57670 broad.mit.edu;ucsc.edu 37 7 138595898 138595898 + Missense_Mutation SNP G G T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . KIAA1549-369 NM_020910 exon4 c.C3139A p.Q1047K CTGTTTGAACTTG . 28 9 14 0 . 0 0 0 0 0 MGAM 8972 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 141750617 141750617 + Missense_Mutation SNP G G T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . MGAM-70 NM_004668 exon24 c.G2758T p.V920F AATGGTGTCCCAA . 196 41 147 0 . 0 0 0 0 0 OR2F1 26211 bcgsc.ca 37 7 143657509 143657509 + Missense_Mutation SNP G G T novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . OR2F1-71 NM_012369 exon1 c.G446T p.W149L CATCCTGGGTCAG . 145 91 108 4 . 0 0 0 0 0 PTPRN2 5799 broad.mit.edu 37 7 157414139 157414139 + Silent SNP G G A rs77143062 TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . PTPRN2-295 NM_002847 exon15 c.C2259T p.C753C GTAGGCGCACAGC . 395 15 287 0 G|0.999;A|0.000 0 0 0 0 0 LZTS1 11178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 20107305 20107305 + Silent SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . LZTS1-91 NM_021020 exon3 c.C1719T p.A573A CTCCCCGGCGCTG . 124 56 132 0 . 1 1 0 0 0 PKHD1L1 93035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 110451259 110451259 + Silent SNP G G A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . PKHD1L1-145 NM_177531 exon32 c.G3894A p.K1298K GCCCAAGTTGTCT . 212 81 249 0 . 0 0 0 0 0 RGS3 5998 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 116269730 116269730 + Missense_Mutation SNP C C T rs200633658 alternate_allele TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . RGS3-227 NM_144488 exon14 c.C1249T p.R417W CAGGCACGGCCTG . 47 18 56 1 C|0.999;A|0.001 16 7 9 0 0 NYX 60506 hgsc.bcm.edu 37 X 41333524 41333524 + Missense_Mutation SNP G G C novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . NYX-108 NM_022567 exon2 c.G818C p.W273S GCGCCTGGTTCGC . 27 2 20 0 . 0 0 0 0 0 LNX2 222484 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 13 28136573 28136575 + In_Frame_Del DEL CCG CCG - novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 CCG CCG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . LNX2-228 NM_153371 exon5 c.1199_1201del p.400_401del . . 143 58 175 0 . 0 0 0 0 0 LNX2 222484 hgsc.bcm.edu 37 13 28136573 28136576 + Frame_Shift_Del DEL CCGG CCGG - novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 CCGG CCGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . LNX2-228 NM_153371 exon5 c.1198_1201del p.400_401del . . 154 30 181 0 . 0 0 0 0 0 C15orf43 145645 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 45270783 45270783 + Frame_Shift_Del DEL A A - novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . C15orf43-90 NM_152448 exon7 c.620delA p.E207fs . . 44 18 52 0 . 0 0 0 0 0 NF1 4763 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 29490388 29490388 + Frame_Shift_Del DEL C C - novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . NF1-3353 NM_001128147 exon4 c.473delC p.S158fs . . 104 56 110 0 . 0 0 0 0 0 NF1 4763 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 29552188 29552189 + Frame_Shift_Del DEL AG AG - novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 AG AG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . NF1-3353 NM_000267 exon17 c.1921_1922del p.641_641del . . 177 70 171 0 . 0 0 0 0 0 C19orf45 374877 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 7570473 7570475 + In_Frame_Del DEL CGG CGG - novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 CGG CGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . C19orf45-90 NM_198534 exon6 c.966_968del p.322_323del . . 71 25 97 0 . 0 0 0 0 0 PARD6B 84612 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 49366983 49366991 + In_Frame_Del DEL TCAAAAACT TCAAAAACT - novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 TCAAAAACT TCAAAAACT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . PARD6B-91 NM_032521 exon3 c.1077_1085del p.359_362del . . 74 22 66 0 . 0 0 0 0 0 PLAC4 191585 broad.mit.edu 37 21 42551313 42551313 + Nonsense_Mutation DEL C C - novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . . NM_182832 exon1 c.243delG p.W81X GGGTATCCAGGGT . 6 2 17 0 . 0 0 0 0 0 UFSP1 402682 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 100486530 100486530 + Frame_Shift_Del DEL G G - novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . UFSP1-22 NM_001015072 exon1 c.363delC p.P121fs . . 197 106 153 0 . 0 0 0 0 0 PPP2R2A 5520 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 26227846 26227849 + Frame_Shift_Del DEL CACA CACA - novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 CACA CACA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . PPP2R2A-659 NM_001177591 exon10 c.1291_1294del p.431_432del . . 47 12 54 0 . 0 0 0 0 0 KAT6A 7994 broad.mit.edu 37 8 41798420 41798422 + In_Frame_Del DEL CTC CTC - novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 CTC CTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . . NM_001099412 exon16 c.2977_2979del p.993_993del TTCCGGCTCCTCC . 185 7 175 0 . 0 0 0 0 0 PORCN 64840 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 48371012 48371012 + Frame_Shift_Del DEL G G - novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . PORCN-133 NM_203475 exon5 c.591delG p.L197fs . . 11 11 15 0 . 0 0 0 0 0 ITPKA 3706 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 41794669 41794670 + Frame_Shift_Ins INS - - A novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . ITPKA-226 NM_002220 exon5 c.1078_1079insA p.E360fs . . 80 29 67 0 . 0 0 0 0 0 SLC10A4 201780 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 48490947 48490948 + Frame_Shift_Ins INS - - TC novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . SLC10A4-90 NM_152679 exon3 c.1305_1306insTC p.T435fs . . 67 16 63 0 . 0 0 0 0 0 EPS15L1 58513 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 16503123 16503124 + Missense_Mutation DNP GT GT AA novel TCGA-BQ-7044-01A-11D-1961-08 TCGA-BQ-7044-11A-01D-1961-08 GT GT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f0589e51-4685-4613-8004-44efad45180f 12341a8c-b9d0-445d-b2fd-ed077738ba31 . EPS15L1 exon19 c.A2094T p.LP698FS CGAAGGTAAGGAA . 79.0 43.0 84.0 0.0 . 0 0 0 0 0