Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CELSR2	1952	hgsc.bcm.edu	37	1	109801211	109801211	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	CELSR2-526	NM_001408	exon2	c.G3468C	p.T1156T	CGCCACGCTGGCC	.	11	2	12	0	.	16	16	0	0	0
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	208270156	208270156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PLXNA2-92	NM_025179	exon7	c.G1804T	p.V602L	CCTCCACCTCTGT	.	63	20	82	0	.	2	1	1	0	0
STAM	8027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17747670	17747670	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	STAM-154	NM_003473	exon12	c.T1139A	p.M380K	ATCCGATGTATTC	.	166	48	228	0	.	17	9	8	0	0
C10orf2	56652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	102750271	102750271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	C10orf2-69	NM_021830	exon3	c.G1563T	p.M521I	GTTCATGATGGGT	.	230	76	250	1	.	26	9	17	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092813	1092813	+	Silent	SNP	C	C	T	rs12577898		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	MUC2-90	NM_002457	exon30	c.C4632T	p.T1544T	CACCACCACGGTG	.	12	2	11	0	.	0	0	0	0	0
OR52N5	390075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5799428	5799428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	OR52N5-70	NM_001001922	exon1	c.C437A	p.T146N	GGGTTGGTGAGTG	.	34	11	54	0	.	0	0	0	0	0
ACCSL	390110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	44073203	44073203	+	Missense_Mutation	SNP	G	G	T	rs200162550	byfrequency;alternate_allele	TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	ACCSL-95	NM_001031854	exon5	c.G706T	p.V236L	CTTCAGGTGGTGG	.	415	54	476	1	G|0.998;A|0.002	0	0	0	0	0
AP5B1	91056	hgsc.bcm.edu	37	11	65545368	65545368	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	.	NM_138368	exon2	c.C2596G	p.L866V	CCGCCAGGGGCAG	.	6	4	3	2	.	12	3	9	0	0
BUD13	84811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	116633298	116633298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	BUD13-154	NM_032725	exon4	c.T1007C	p.F336S	TCTCCAAAATGGG	.	213	66	267	0	.	20	6	14	0	0
EMG1	10436	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7084424	7084424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	.	.	.	.	.	TTTCCAGTTGGAT	.	53	8	38	0	.	147	100	47	0	0
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	112694159	112694159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	.	NM_001109662	exon21	c.G2860A	p.D954N	TGCTATCAAATCT	.	177	55	191	0	.	0	0	0	0	0
TDRD3	81550	broad.mit.edu	37	13	61102844	61102844	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	TDRD3-516	NM_001146070	exon11	c.T1485C	p.A495A	TGGTGCTTTTAAA	.	141	4	169	0	.	2	2	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111371943	111371943	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	ING1-515	NM_005537	exon2	c.C933G	p.H311Q	CGACCACGACGAC	.	33	2	36	0	.	26	26	0	0	0
FITM1	161247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24601751	24601751	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	FITM1-68	NM_203402	exon2	c.G598C	p.E200Q	GCAGAGGAAGCAG	.	93	37	135	1	.	2	0	2	0	0
ITGAL	3683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30507473	30507473	+	Missense_Mutation	SNP	G	G	A	rs199716730		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	ITGAL-994	NM_002209	exon14	c.G1559A	p.R520Q	TCGGGCGGTTTGG	.	244	31	209	1	G|0.999;A|0.001	7	7	0	0	0
SLC12A3	6559	broad.mit.edu	37	16	56906659	56906659	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	SLC12A3-155	NM_001126108	exon8	c.A1056G	p.T352T	GGCCACAGGCATC	.	98	3	112	0	.	1	1	0	0	0
PMFBP1	83449	broad.mit.edu	37	16	72158703	72158703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PMFBP1-92	NM_031293	exon17	c.C2552T	p.A851V	AAGGCGGCCATCT	.	221	4	240	1	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	530	91	623	94	.	41	4	37	0	0
GPRC5C	55890	broad.mit.edu	37	17	72428210	72428210	+	Silent	SNP	C	C	G	rs138824950	alternate_allele	TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	GPRC5C-525	NM_022036	exon1	c.C33G	p.P11P	ACAACCCACACGC	.	34	3	36	0	C|1.000;T|0.000	49	32	17	0	0
WDR45B	56270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80579499	80579499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	.	NM_019613	exon6	c.A604G	p.T202A	ATGCAGTTGCAAT	.	81	11	103	0	.	68	47	21	0	0
TRAPPC5	126003	broad.mit.edu	37	19	7747477	7747477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	TRAPPC5-68	NM_001042461	exon2	c.G338A	p.R113H	ACGCGCGCACCTT	.	48	3	43	0	.	228	228	0	0	0
GRIN2D	2906	hgsc.bcm.edu	37	19	48945880	48945880	+	Silent	SNP	T	T	C	rs62130268		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	GRIN2D-156	NM_000836	exon13	c.T2697C	p.A899A	CAGCGCTGAGGCC	.	5	5	3	1	T|0.245;C|0.755	1	1	0	0	0
NTN5	126147	hgsc.bcm.edu	37	19	49174237	49174237	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	NTN5-136	NM_145807	exon2	c.G7C	p.V3L	AGGTCACGGGCAT	.	22	2	31	0	.	1	1	0	0	0
KLK3	354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51359636	51359636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	KLK3-228	NM_001030050	exon2	c.G187T	p.A63S	CTCACAGCTGCCC	.	144	42	172	0	.	1	1	0	0	0
PNPT1	87178	broad.mit.edu	37	2	55900121	55900121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PNPT1-90	NM_033109	exon9	c.G773A	p.G258D	TGAATGCCCTGAA	.	268	4	274	0	.	22	22	0	0	0
ANKRD23	200539	hgsc.bcm.edu;broad.mit.edu	37	2	97505559	97505559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	ANKRD23-91	NM_144994	exon8	c.G727A	p.G243R	TGTCCCCTTCCTG	.	37	7	40	0	.	0	0	0	0	0
RGPD8	727851	broad.mit.edu	37	2	113127775	113127775	+	Missense_Mutation	SNP	G	G	C	rs15849		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	.	NM_001164463	exon23	c.C5278G	p.P1760A	GGGAAGGATTTTC	.	133	3	125	0	C|1.000;|0.000	29	3	26	0	0
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	149226038	149226038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	MBD5-95	NM_018328	exon9	c.A526G	p.N176D	TCATCAAATGCCA	.	99	24	94	0	.	2	1	1	0	0
CYTIP	9595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	158287080	158287080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	CYTIP-93	NM_004288	exon5	c.A467G	p.N156S	AGCAGGTTTCCGG	.	87	17	78	0	.	0	0	0	0	0
SCN1A	6323	broad.mit.edu	37	2	166866330	166866330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	SCN1A-147	NM_001165963	exon20	c.G3901A	p.A1301T	CATTTGCTGTTAA	.	109	4	105	0	.	0	0	0	0	0
JAG1	182	hgsc.bcm.edu	37	20	10621489	10621489	+	Silent	SNP	C	C	A	rs202075581	alternate_allele	TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	JAG1-1273	NM_000214	exon25	c.G3141T	p.S1047S	AATCAGCGAGCTG	.	74	5	101	0	C|0.999;T|0.001	17	16	0	0	1
FRG1B	284802	broad.mit.edu	37	20	29628243	29628243	+	RNA	SNP	T	T	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	FRG1B-22	.	.	.	.	CTTTGTTGGCCTC	.	169	4	194	1	.	62	62	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29628245	29628245	+	RNA	SNP	G	G	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	FRG1B-22	.	.	.	.	TTGTTGGCCTCAA	.	170	4	191	1	.	55	55	0	0	0
MAFB	9935	hgsc.bcm.edu	37	20	39316754	39316754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	MAFB-846	NM_005461	exon1	c.T737C	p.L246P	TTCTTCAGGGTCC	.	33	2	34	1	.	23	23	0	0	0
PI3	5266	broad.mit.edu	37	20	43804649	43804649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PI3-514	NM_002638	exon2	c.G227T	p.C76F	GCTCCTGCCCCAT	.	125	6	94	2	.	3109	3075	28	4	2
C21orf91	54149	broad.mit.edu	37	21	19190580	19190580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	C21orf91-91	NM_017447	exon2	c.G56A	p.S19N	CAAACACTGCAAA	.	125	5	185	0	.	2	2	0	0	0
PRDM15	63977	hgsc.bcm.edu	37	21	43221684	43221684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PRDM15-90	NM_022115	exon31	c.G4240T	p.V1414F	CGCTGACGGTATC	.	49	3	91	0	.	4	4	0	0	0
ARMC8	25852	hgsc.bcm.edu	37	3	137986077	137986077	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	ARMC8-90	NM_015396	exon16	c.C1338G	p.S446R	TCCAAGCAAAGAG	.	13	2	15	0	.	0	0	0	0	0
MUC4	4585	hgsc.bcm.edu	37	3	195515493	195515493	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	MUC4-90	NM_018406	exon2	c.C2958T	p.S986S	ACCTGTGGATGCC	.	16	2	18	0	.	0	0	0	0	0
KIAA1211	57482	hgsc.bcm.edu	37	4	57180739	57180739	+	Missense_Mutation	SNP	G	G	C	rs112530577		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	KIAA1211-70	NM_020722	exon8	c.G1071C	p.E357D	GGAGGAGCTCAAA	.	4	4	5	2	G|0.984;C|0.016	0	0	0	0	0
FBXW7	55294	broad.mit.edu	37	4	153268165	153268165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	FBXW7-6296	NM_033632	exon4	c.G643A	p.A215T	CATTGGCTGCTCT	.	122	3	162	0	.	5	5	0	0	0
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32108131	32108131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PDZD2-563	NM_178140	exon24	c.A8410G	p.N2804D	GCTATTAATGGGA	.	126	53	159	0	.	1	1	0	0	0
SLIT3	6586	hgsc.bcm.edu	37	5	168098301	168098301	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	SLIT3-95	NM_001271946	exon34	c.C4050G	p.C1350W	GGAGCGGCACAGG	.	36	2	50	0	.	20	20	0	0	0
GMDS	2762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	1930387	1930387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	GMDS-90	NM_001500	exon7	c.G721A	p.G241R	GATTTCCCAAACT	.	134	33	163	0	.	72	29	43	0	0
MEP1A	4224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46801054	46801054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	MEP1A-183	NM_005588	exon11	c.A1388G	p.E463G	ATTCGGAGGGATA	.	130	19	157	0	.	0	0	0	0	0
OPN5	221391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	47754339	47754339	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	OPN5-69	NM_181744	exon2	c.C219A	p.I73I	GACTATCAATTTA	.	123	43	137	1	.	0	0	0	0	0
KLHL31	401265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	53517013	53517013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	KLHL31-23	NM_001003760	exon3	c.G1288A	p.E430K	TTCCTTCTGCGTT	.	96	35	141	1	.	1	1	0	0	0
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70639518	70639518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	COL19A1-156	NM_001858	exon6	c.G592T	p.D198Y	CAGACTGATGAAA	.	93	16	150	0	.	0	0	0	0	0
STX11	8676	broad.mit.edu	37	6	144507993	144507993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	STX11-91	NM_003764	exon2	c.C229T	p.R77W	TCCATGCGGCGCC	.	34	4	43	0	.	8	8	0	0	0
SKAP2	8935	bcgsc.ca	37	7	26765601	26765601	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	SKAP2-91	NM_003930	exon8	c.C599G	p.T200R	GCTGCTGTAAACT	.	75	4	57	0	.	0	0	0	0	0
NME8	51314	broad.mit.edu	37	7	37927910	37927910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	.	NM_016616	exon15	c.C1279T	p.P427S	AGTTTGCCGGTCA	.	141	4	148	0	.	1	1	0	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121652844	121652844	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PTPRZ1-699	NM_002851	exon12	c.T3744C	p.P1248P	GTCGCCTACTTCT	.	274	4	331	0	.	0	0	0	0	0
INSIG1	3638	hgsc.bcm.edu	37	7	155090012	155090012	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	INSIG1-90	NM_198337	exon2	c.A17C	p.D6A	TGCACGACCACTT	.	19	4	8	1	.	5	4	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144940741	144940741	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	EPPK1-25	NM_031308	exon1	c.G6681A	p.A2227A	GACGCCCGCGATG	.	133	4	146	0	.	2	2	0	0	0
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	5922386	5922386	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	KIAA2026-92	NM_001017969	exon8	c.A3610C	p.S1204R	TCTGGCTAGTCTT	.	97	32	115	0	.	3	1	2	0	0
GTF3C5	9328	broad.mit.edu	37	9	135919313	135919313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	GTF3C5-90	NM_012087	exon3	c.G572A	p.R191Q	AGCACCGGTAAGG	.	124	3	116	0	.	1	1	0	0	0
DUSP12	11266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	161726704	161726704	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	DUSP12-226	NM_007240	exon6	c.990delG	p.L330fs	.	.	68	23	82	0	.	0	0	0	0	0
NF2	4771	broad.mit.edu	37	22	30000023	30000024	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	NF2-4696	NM_181831	exon1	c.36_37del	p.12_13del	CTTCAGCTCTCTC	.	11	5	16	0	.	0	0	0	0	0
KCNJ4	3761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	38823432	38823433	+	In_Frame_Ins	INS	-	-	GGA	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	KCNJ4-90	NM_004981	exon2	c.706_707insTCC	p.P236delinsSP	.	.	54	13	72	0	.	0	0	0	0	0