Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SRSF4	6429	hgsc.bcm.edu;broad.mit.edu	37	1	29475685	29475685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SRSF4-226	NM_005626	exon6	c.G722A	p.R241Q	TTGCTCCGGCTCC	.	162	15	200	1	.	61	50	11	0	0
GJB5	2709	broad.mit.edu	37	1	35223072	35223072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	GJB5-91	NM_005268	exon2	c.C141A	p.D47E	TGATGACCACAAG	.	68	4	68	0	.	1	1	0	0	0
ZNF691	51058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	43317094	43317094	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ZNF691-24	NM_001242739	exon4	c.C558A	p.L186L	AGACCTCACCACG	.	78	17	89	0	.	11	10	1	0	0
FGGY	55277	hgsc.bcm.edu	37	1	60139806	60139806	+	Splice_Site	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	FGGY-69	NM_001113411	exon15	c.1584+1G>C	.	GTACAGGTATGTG	.	27	2	28	0	.	0	0	0	0	0
CACHD1	57685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	65143946	65143946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CACHD1-92	NM_020925	exon23	c.G3044A	p.G1015E	TCGGGGGGATTGT	.	84	6	65	0	.	7	6	1	0	0
FMO1	2326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171247924	171247924	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	FMO1-515	NM_002021	exon5	c.A541T	p.I181L	CCAGATATATTTA	.	137	44	111	0	.	167	71	96	0	0
SUCO	51430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	172558217	172558217	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	.	NM_014283	exon18	c.T1976G	p.L659R	ATTATCTTGTGTT	.	88	30	73	0	.	13	7	6	0	0
SHCBP1L	81626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182921876	182921876	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SHCBP1L-91	NM_030933	exon1	c.G393A	p.L131L	GTCCTGCAGCACT	.	30	7	35	0	.	0	0	0	0	0
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	200973948	200973948	+	Silent	SNP	C	C	A	rs140945427	alternate_allele	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	KIF21B-96	NM_017596	exon6	c.G846T	p.R282R	CCCTGTCCGCTTC	.	84	26	68	2	C|1.000;T|0.000	3	3	0	0	0
TMEM81	388730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205053045	205053045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	TMEM81-68	NM_203376	exon1	c.T404G	p.F135C	GGTTTGAAGACCT	.	139	32	119	0	.	3	2	1	0	0
C10orf90	118611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	128193076	128193076	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	C10orf90-92	NM_001004298	exon3	c.G693C	p.E231D	ACTGGTCTCTTTG	.	98	24	96	0	.	0	0	0	0	0
OR52B2	255725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6190974	6190974	+	Missense_Mutation	SNP	T	T	A	rs35364339	alternate_allele	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	.	NM_001004052	exon1	c.A583T	p.T195S	TAACAGTGATGTC	.	43	11	42	0	.	0	0	0	0	0
NUP160	23279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47819410	47819410	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	NUP160-209	NM_015231	exon27	c.T3210G	p.A1070A	AGCTCTAGCACGT	.	144	34	114	1	.	31	20	11	0	0
OR4C11	219429	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	55371448	55371448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	OR4C11-69	NM_001004700	exon1	c.G402T	p.M134I	CTGGCTCATGATG	.	110	6	110	0	.	0	0	0	0	0
DDX47	51202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12974592	12974592	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	DDX47-226	NM_201224	exon4	c.T374C	p.V125A	TAGCTGTGATTGT	.	102	35	84	0	.	0	0	0	0	0
ANP32D	23519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48866684	48866684	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ANP32D-227	NM_012404	exon1	c.C237T	p.G79G	AGTGGGCCTAGAA	.	112	38	103	0	.	0	0	0	0	0
TDG	6996	broad.mit.edu	37	12	104380795	104380795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	TDG-661	NM_003211	exon10	c.C1160T	p.S387L	CCCAGTCATTTAC	.	166	6	129	0	.	14	12	2	0	0
KLF12	11278	hgsc.bcm.edu	37	13	74420188	74420188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	KLF12-91	NM_007249	exon4	c.T446C	p.V149A	GAGGCCACAAGGG	.	37	2	41	0	.	7	7	0	0	0
FBXO34	55030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55818351	55818351	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	FBXO34-228	NM_017943	exon2	c.C1243G	p.P415A	GGGTTACCTTTTT	.	210	57	238	0	.	18	12	6	0	0
SRSF5	6430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70238167	70238167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SRSF5-226	NM_001039465	exon8	c.A808G	p.S270G	GTTGACAGTGGCA	.	226	35	212	1	.	70	47	23	0	0
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95562982	95562982	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	DICER1-961	NM_030621	exon24	c.G4275T	p.E1425D	CAGGCTCTCCTCC	.	61	24	49	0	.	13	10	3	0	0
SYNE3	161176	hgsc.bcm.edu	37	14	95916297	95916297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	.	NM_152592	exon7	c.T1420C	p.S474P	GAAGGGAAGGCAG	.	6	2	6	0	.	2	2	0	0	0
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1552985	1552985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	TELO2-90	NM_016111	exon15	c.G1824T	p.Q608H	CCGGCAGCGCATG	.	166	19	155	0	.	25	16	9	0	0
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	58580300	58580300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CNOT1-95	NM_206999	exon29	c.A3931C	p.N1311H	CTAAATTCTTCAG	.	159	43	131	0	.	48	28	20	0	0
SF3B3	23450	broad.mit.edu	37	16	70563043	70563043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SF3B3-91	NM_012426	exon3	c.G338A	p.R113H	GATGCCGTCGCAT	.	119	4	89	1	.	32	32	0	0	0
MLKL	197259	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	74729257	74729257	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MLKL-561	NM_152649	exon2	c.G399C	p.W133C	CTGTGCCCAGGAC	.	194	35	184	0	.	7	6	1	0	0
ZNF778	197320	broad.mit.edu	37	16	89288533	89288533	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	.	NM_182531	exon3	c.A59T	p.H20L	GCCTTCATGAAGA	.	103	4	110	0	.	0	0	0	0	0
SERPINF1	5176	broad.mit.edu	37	17	1673260	1673260	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SERPINF1-227	NM_002615	exon3	c.C199A	p.R67R	CTGTACCGGGTGC	.	182	6	138	0	.	36	36	0	0	0
SLC13A5	284111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	6597517	6597517	+	Splice_Site	SNP	C	C	G	rs113208940	bycluster	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SLC13A5-90	NM_001143838	exon9	c.1056-1G>C	.	ACATACCTAGGTG	.	66	17	27	0	G|1.000	0	0	0	0	0
GAS7	8522	broad.mit.edu;bcgsc.ca	37	17	9846496	9846496	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	GAS7-1083	NM_201433	exon7	c.C673T	p.Q225X	GTTTCTGGAGCAG	.	334	16	244	0	.	4	4	0	0	0
MYO1D	4642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	30932193	30932193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MYO1D-137	NM_015194	exon21	c.G2776A	p.D926N	TGAGGTCTTTGTT	.	108	19	67	0	.	70	51	19	0	0
UBTF	7343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42289818	42289818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	UBTF-90	NM_014233	exon8	c.C665G	p.T222S	TTCGTAGTGGCCT	.	179	44	136	0	.	0	0	0	0	0
MRPL10	124995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45901623	45901623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MRPL10-91	NM_148887	exon6	c.C764T	p.S255F	ATGACAGAATCCT	.	179	87	110	0	.	104	44	60	0	0
GGA3	23163	broad.mit.edu	37	17	73237524	73237524	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	GGA3-154	NM_138619	exon10	c.C903A	p.V301V	ATTGATGACCTGC	.	156	4	105	0	.	14	14	0	0	0
SHC2	25759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	422226	422226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SHC2-392	NM_012435	exon11	c.A1540G	p.T514A	GGTTGGTGACGCT	.	31	9	16	0	.	3	3	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9046479	9046479	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MUC16-566	NM_024690	exon5	c.G35152C	p.V11718L	CCATTACAGGTGT	.	158	44	115	0	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9085838	9085838	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MUC16-566	NM_024690	exon1	c.G5977T	p.E1993X	CTTTTTCTGAAGA	.	126	9	93	0	.	0	0	0	0	0
ZNF44	51710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12384693	12384693	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ZNF44-23	NM_001164276	exon5	c.C521G	p.T174S	TGTCCAGTATCAA	.	171	48	145	1	.	14	7	7	0	0
ZNF208	7757	broad.mit.edu;bcgsc.ca	37	19	22157487	22157487	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ZNF208-7	NM_007153	exon4	c.T349A	p.Y117N	TGGTATAACCAAT	.	182	7	139	0	.	0	0	0	0	0
MAP4K1	11184	hgsc.bcm.edu	37	19	39096057	39096057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MAP4K1-980	NM_007181	exon19	c.A1438G	p.K480E	TTCTCTTCATCTT	.	17	2	19	0	.	0	0	0	0	0
ZNF544	27300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58774085	58774085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ZNF544-91	NM_014480	exon7	c.G2113A	p.V705M	CTTGTAGTGCATC	.	327	85	282	0	.	17	17	0	0	0
NT5C1B	93034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	18767651	18767651	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	NT5C1B-47	NM_001199087	exon4	c.C358G	p.Q120E	ATTCTTGTGATCC	.	104	11	104	0	.	0	0	0	0	0
CPO	130749	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	207827299	207827299	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CPO-154	NM_173077	exon7	c.C738T	p.Y246Y	ACCTTACGGCTAC	.	255	15	179	0	.	0	0	0	0	0
JAG1	182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	10625851	10625851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	JAG1-1273	NM_000214	exon17	c.G2167A	p.E723K	CCCCCTCATCATA	.	142	43	119	0	.	41	36	5	0	0
SON	6651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34918555	34918555	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SON-97	NM_032195	exon2	c.T114G	p.N38K	AACAAATACACCC	.	65	23	73	0	.	43	28	15	0	0
SON	6651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34922861	34922861	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SON-97	NM_032195	exon3	c.T1324G	p.S442A	GGGCCCTCTGTGA	.	87	23	88	0	.	48	30	18	0	0
UBE2L3	7332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21975858	21975858	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	UBE2L3-414	NM_001256355	exon4	c.G539C	p.R180P	CGCTTCGGGCTGA	.	62	20	64	0	.	276	188	88	0	0
LIMK2	3985	broad.mit.edu	37	22	31667152	31667152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	LIMK2-548	NM_005569	exon12	c.C1348T	p.R450W	ATCCACCGGGATC	.	174	5	146	0	.	39	38	1	0	0
NUP50	10762	hgsc.bcm.edu	37	22	45574342	45574342	+	Silent	SNP	A	A	G	rs13209197		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	NUP50-68	NM_007172	exon5	c.A564G	p.K188K	CTTTAAAGACTAT	.	113	12	87	2	.	17	17	0	0	0
VHL	7428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	10191506	10191506	+	Missense_Mutation	SNP	C	C	G	rs5030820	bycluster	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	VHL-6694	NM_000551	exon3	c.C499G	p.R167G	GTTGTCCGGAGCC	.	58	24	47	0	C|1.000	11	5	6	0	0
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52443866	52443866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	BAP1-1032	NM_004656	exon1	c.G29A	p.S10N	GGGTCGCTCTCCA	.	48	24	59	0	.	0	0	0	0	0
HAUS3	79441	hgsc.bcm.edu;bcgsc.ca	37	4	2242534	2242534	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	HAUS3-138	NM_024511	exon2	c.T140G	p.V47G	TCATTCACATTCC	.	153	13	168	0	.	5	5	0	0	0
APBB2	323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	41015603	41015603	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	APBB2-92	NM_173075	exon6	c.A832T	p.T278S	TACCTGTTTCATC	.	327	89	299	2	.	0	0	0	0	0
TMPRSS11A	339967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	68777129	68777129	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	TMPRSS11A-69	NM_182606	exon10	c.G1197A	p.K399K	CTTGTCCTTTTGA	.	176	9	150	0	.	0	0	0	0	0
ALPK1	80216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	113333046	113333046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ALPK1-337	NM_001102406	exon5	c.G340A	p.V114M	TTCTTGGTGGACC	.	39	7	40	0	.	6	2	4	0	0
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123128292	123128292	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	KIAA1109-80	NM_015312	exon14	c.G1526C	p.S509T	GTGACAGTCCTCC	.	276	65	300	0	.	3	1	2	0	0
NIM1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	43280172	43280172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	.	NM_153361	exon4	c.A652G	p.S218G	GGATTCAGCACAG	.	120	40	139	0	.	2	1	1	0	0
HTR1A	3350	broad.mit.edu	37	5	63257393	63257393	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	HTR1A-94	NM_000524	exon1	c.C154T	p.L52L	TGCCCAGCACCGC	.	82	3	85	1	.	0	0	0	0	0
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	70800508	70800508	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	BDP1-92	NM_018429	exon16	c.C2302T	p.Q768X	ATATTACAGCCTG	.	143	42	86	0	.	3	2	1	0	0
ECI2	10455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	4128067	4128067	+	Splice_Site	SNP	T	T	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ECI2-90	NM_006117	exon6	c.412-2A>T	.	TACATCTGTGTAA	.	194	53	164	0	.	0	0	0	0	0
SCGN	10590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	25701539	25701539	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SCGN-93	NM_006998	exon11	c.T807C	p.C269C	TTTGTGTCTTGGG	.	197	57	145	1	.	14	4	10	0	0
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31937328	31937328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SKIV2L-290	NM_006929	exon28	c.G3577A	p.E1193K	ACCCCTGAGGGCC	.	160	41	162	0	.	41	30	11	0	0
NYAP1	222950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100087003	100087003	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	.	NM_173564	exon4	c.C1659T	p.A553A	CCCAGCCACAGCA	.	81	19	43	0	.	0	0	0	0	0
LAMB1	3912	broad.mit.edu	37	7	107580801	107580801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	LAMB1-97	NM_002291	exon25	c.T3394C	p.C1132R	AGTCACAGGCTAG	.	63	3	28	0	.	1	1	0	0	0
KIAA1967	57805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	22473664	22473664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	KIAA1967-92	NM_021174	exon14	c.C1748T	p.A583V	AAGAAGCCACCAA	.	133	39	142	0	.	61	32	29	0	0
KCTD9	54793	broad.mit.edu	37	8	25293942	25293942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	KCTD9-90	NM_017634	exon7	c.G559A	p.A187T	TTATTGCCACTTC	.	80	4	82	0	.	0	0	0	0	0
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	30704070	30704070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	TEX15-97	NM_031271	exon1	c.A2464G	p.I822V	AATAAATGTCAAA	.	101	10	108	0	.	0	0	0	0	0
SPATA31A3	727830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	40705657	40705657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	.	NM_001083124	exon4	c.C3314T	p.P1105L	TGTTTCCCCCTAT	.	322	168	315	0	.	0	0	0	0	0
RORB	6096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	77286722	77286722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	RORB-229	NM_006914	exon9	c.G1129A	p.E377K	CTTATAGAACCAA	.	96	33	66	0	.	0	0	0	0	0
CDK5RAP2	55755	broad.mit.edu	37	9	123313163	123313163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CDK5RAP2-229	NM_018249	exon4	c.G213T	p.K71N	TTCTTTCTTCAAT	.	138	5	152	0	.	12	12	0	0	0
EXOSC2	23404	ucsc.edu	37	9	133569210	133569210	+	Missense_Mutation	SNP	G	G	C	rs202001690		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	EXOSC2-91	NM_014285	exon1	c.G32C	p.R11P	TGGCTCGCAAGCC	.	58	7	51	3	.	14	10	4	0	0
UTP14A	10813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	129045744	129045744	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	UTP14A-132	NM_006649	exon6	c.C384T	p.I128I	TCAGATCCACAGA	.	180	109	138	0	.	0	0	0	0	0
RCAN3	11123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	24840967	24840967	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	RCAN3-90	NM_001251980	exon1	c.105delT	p.D35fs	.	.	101	21	93	0	.	0	0	0	0	0
MTCH2	23788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	47653227	47653227	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MTCH2-90	NM_014342	exon6	c.406delC	p.L136fs	.	.	66	23	68	0	.	0	0	0	0	0
CHD8	57680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	21862522	21862522	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CHD8-277	NM_001170629	exon30	c.5513delA	p.K1838fs	.	.	83	24	80	0	.	0	0	0	0	0
NFATC3	4775	broad.mit.edu	37	16	68200904	68200904	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	NFATC3-92	NM_173163	exon5	c.1760delT	p.I587fs	CCTCTATACCCGT	.	157	10	146	0	.	0	0	0	0	0
ERBB2	2064	broad.mit.edu	37	17	37883164	37883164	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ERBB2-9959	NM_004448	exon25	c.3067delT	p.Y1023fs	GAGGAGTATCTGG	.	333	7	177	0	.	0	0	0	0	0
LRRC8E	80131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	7960603	7960603	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	LRRC8E-92	NM_001268284	exon3	c.115delG	p.G39fs	.	.	68	17	68	0	.	0	0	0	0	0
CALR	811	broad.mit.edu	37	19	13054650	13054658	+	In_Frame_Del	DEL	GAGGATGAG	GAGGATGAG	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	GAGGATGAG	GAGGATGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CALR-91	NM_004343	exon9	c.1177_1185del	p.393_395del	AAAGATGAGGATG	.	5	3	8	0	.	0	0	0	0	0
ZNF225	7768	broad.mit.edu	37	19	44636328	44636328	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	.	NM_013362	exon5	c.1561delT	p.F521fs	AAAAGATTTACTC	.	125	12	118	0	.	0	0	0	0	0
GPR155	151556	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	175346653	175346657	+	Frame_Shift_Del	DEL	GTTAA	GTTAA	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	GTTAA	GTTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	GPR155-91	NM_001267051	exon2	c.28_32del	p.10_11del	.	.	162	45	161	0	.	0	0	0	0	0
HAUS3	79441	hgsc.bcm.edu	37	4	2242527	2242530	+	Frame_Shift_Del	DEL	TTCA	TTCA	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	TTCA	TTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	HAUS3-138	NM_024511	exon2	c.144_147del	p.48_49del	.	.	148	39	166	0	.	0	0	0	0	0
SAR1B	51128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	133956720	133956720	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SAR1B-227	NM_001033503	exon4	c.81delA	p.K27fs	.	.	170	41	111	0	.	0	0	0	0	0
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	179192969	179192987	+	Frame_Shift_Del	DEL	GGGTCTGCAGGGCAGACCT	GGGTCTGCAGGGCAGACCT	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	GGGTCTGCAGGGCAGACCT	GGGTCTGCAGGGCAGACCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MAML1-848	NM_014757	exon2	c.958_976del	p.320_326del	.	.	89	21	88	0	.	0	0	0	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	113265327	113265327	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SVEP1-75	NM_153366	exon6	c.1474delC	p.R492fs	.	.	110	29	90	0	.	0	0	0	0	0
ATXN3L	92552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	13337247	13337248	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ATXN3L-542	NM_001135995	exon1	c.806_807del	p.269_269del	.	.	360	205	338	0	.	0	0	0	0	0
TSIX	9383	broad.mit.edu	37	X	73047124	73047125	+	RNA	DEL	AC	AC	-	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	.	.	.	.	.	CACATGACACACA	.	104	7	76	0	.	0	0	0	0	0
SERPINB10	5273	broad.mit.edu	37	18	61584738	61584739	+	Frame_Shift_Ins	INS	-	-	A	rs201620640		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SERPINB10-227	NM_005024	exon2	c.217_218insA	p.E73fs	GAAAGTGAAAAAA	.	42	7	12	0	-|0.985;A|0.015	0	0	0	0	0
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	34064377	34064378	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CEP250-27	NM_007186	exon16	c.1820_1821insT	p.A607fs	.	.	74	23	68	0	.	0	0	0	0	0
PRMT2	3275	hgsc.bcm.edu;broad.mit.edu	37	21	48056904	48056905	+	Splice_Site	INS	-	-	AA	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	PRMT2-91	NM_001535	exon2	c.39+2->AA	.	.	.	55	12	38	0	.	0	0	0	0	0
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	122130209	122130210	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CADPS2-94	NM_001167940	exon11	c.1778_1779insT	p.Y593fs	.	.	145	39	120	0	.	0	0	0	0	0