Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
HSPG2	3339	hgsc.bcm.edu	37	1	22190695	22190695	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	HSPG2-141	NM_005529	exon37	c.C4638T	p.P1546P	GTAGCCGGGGGCA	.	3	3	1	0	.	1	1	0	0	0
KHDRBS1	10657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	32508212	32508212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	KHDRBS1-227	NM_006559	exon9	c.A1319G	p.Y440C	ACCCATATGGACG	.	58	13	66	0	.	74	40	34	0	0
TTLL7	79739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	84348653	84348653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	TTLL7-91	NM_024686	exon20	c.A2536G	p.N846D	TGGAATTACCCCA	.	162	21	209	0	.	0	0	0	0	0
HSD17B7	51478	broad.mit.edu	37	1	162769622	162769622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	HSD17B7-91	NM_016371	exon5	c.C537A	p.F179L	TAATTTCAGCCTC	.	63	3	64	0	.	17	17	0	0	0
CFH	3075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	196706023	196706023	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	CFH-566	NM_000186	exon16	c.A2483T	p.N828I	CACTGAATTATCG	.	61	6	84	0	.	1	1	0	0	0
PPP1R15B	84919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204379183	204379183	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	PPP1R15B-652	NM_032833	exon1	c.G1357T	p.E453X	CATCCTCAGCTTC	.	269	61	300	1	.	0	0	0	0	0
BATF3	55509	hgsc.bcm.edu	37	1	212873074	212873074	+	Missense_Mutation	SNP	C	C	T	rs2202683		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	BATF3-68	NM_018664	exon1	c.G31A	p.V11I	GCAGGACGCTGCC	.	4	4	1	1	C|0.001;G|0.830	0	0	0	0	0
CAMK1D	57118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	12811756	12811756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	CAMK1D-334	NM_153498	exon5	c.G523A	p.G175R	GGCAAAGGAGATG	.	92	17	123	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu;ucsc.edu	37	11	1253260	1253260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	.	NM_002458	exon15	c.C1713A	p.D571E	GGCTGACGACTTC	.	43	4	59	0	.	0	0	0	0	0
OR5T2	219464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56000140	56000140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	OR5T2-70	NM_001004746	exon1	c.C522A	p.S174R	TGACATGCTCACT	.	217	50	194	1	.	0	0	0	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21030825	21030825	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	SLCO1B3-155	NM_019844	exon10	c.G1090C	p.E364Q	TATATGGAGCAAC	.	168	4	157	0	.	0	0	0	0	0
CELA1	1990	hgsc.bcm.edu	37	12	51740415	51740415	+	Missense_Mutation	SNP	A	A	C	rs55827519	alternate_allele	TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	CELA1-153	NM_001971	exon1	c.T8G	p.V3G	TAAAGGACCAGCA	.	80	4	81	1	.	0	0	0	0	0
TPCN1	53373	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113704162	113704162	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	TPCN1-93	NM_017901	exon4	c.414+1G>T	.	ATCTATGTGAGCG	.	384	73	353	2	.	1	0	1	0	0
HERC1	8925	hgsc.bcm.edu	37	15	63929810	63929810	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	HERC1-666	NM_003922	exon64	c.C12126G	p.I4042M	GGCCTGGATGACA	.	8	3	4	1	.	1	0	1	0	0
SNX1	6642	hgsc.bcm.edu	37	15	64426982	64426982	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	SNX1-226	NM_003099	exon12	c.G1341A	p.Q447Q	GCTGCAGCAGGCC	.	39	2	41	0	.	52	52	0	0	0
METTL9	51108	hgsc.bcm.edu	37	16	21611192	21611192	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	METTL9-91	NM_016025	exon1	c.C138G	p.A46A	GGCGGCCGCGGGC	.	9	5	4	1	.	32	12	20	0	0
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89345492	89345492	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	ANKRD11-139	NM_001256183	exon9	c.C7458T	p.L2486L	GATGTGGAGCTTG	.	50	11	28	0	.	0	0	0	0	0
SLFN11	91607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33679780	33679780	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	SLFN11-159	NM_152270	exon5	c.C2301T	p.A767A	CCATTCGGCTTCA	.	94	21	117	0	.	21	18	3	0	0
KRTAP1-3	81850	hgsc.bcm.edu	37	17	39191011	39191011	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	.	NM_030966	exon1	c.C63G	p.G21G	GCTGGAGCCGCAT	.	65	5	48	0	.	0	0	0	0	0
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	8379245	8379245	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	PTPRM-228	NM_001105244	exon28	c.G3693A	p.R1231R	AAACCGGTGCATG	.	107	22	73	0	.	38	23	15	0	0
PRTN3	5657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	841048	841048	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	PRTN3-91	NM_002777	exon1	c.C40T	p.L14L	TCCGTGCTGCTGG	.	49	12	32	0	.	0	0	0	0	0
NDUFA11	126328	ucsc.edu	37	19	5897010	5897010	+	Splice_Site	SNP	T	T	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	NDUFA11-90	NM_001193375	exon3	c.98-2A>T	.	CAGGCCTGCGAGA	.	102	1	81	1	.	2	2	0	0	0
HNRNPL	3191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39336576	39336576	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	HNRNPL-22	NM_001533	exon3	c.C541G	p.R181G	CAGGGCGGGAGAT	.	227	31	188	0	.	82	37	45	0	0
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	49703680	49703680	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	TRPM4-91	NM_017636	exon18	c.G2769T	p.V923V	CATCGTGAGCAAG	.	43	10	41	1	.	0	0	0	0	0
LILRA6	79168	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	54745734	54745734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	LILRA6-24	NM_024318	exon4	c.C376A	p.L126I	CTGAGAGGGTGGG	.	64	23	90	0	.	1	1	0	0	0
ZNF446	55663	hgsc.bcm.edu	37	19	58991385	58991385	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	ZNF446-91	NM_017908	exon6	c.G801A	p.S267S	GCGCTCGGGTGAG	.	11	7	12	1	.	2	2	0	0	0
DIS3L2	129563	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	233075106	233075106	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	DIS3L2-136	NM_152383	exon10	c.C1195G	p.L399V	AAGCCACTCGCTG	.	79	9	77	0	.	0	0	0	0	0
CHRNA4	1137	hgsc.bcm.edu	37	20	61981411	61981411	+	Missense_Mutation	SNP	G	G	A	rs55915440		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	CHRNA4-91	NM_000744	exon5	c.C1352T	p.P451L	TGGGGCGGGCGGC	.	10	6	9	1	G|0.999;A|0.001	0	0	0	0	0
PRDM15	63977	hgsc.bcm.edu	37	21	43298959	43298959	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	PRDM15-90	NM_022115	exon3	c.G258C	p.P86P	CCGGGGCGGCGAA	.	2	2	0	0	.	0	0	0	0	0
KRTAP10-3	386682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45978127	45978127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	KRTAP10-3-91	NM_198696	exon1	c.G472A	p.V158M	GGGACACGGAGGA	.	152	31	162	0	.	0	0	0	0	0
GTSE1	51512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46724721	46724721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	GTSE1-187	NM_016426	exon10	c.A1861C	p.K621Q	TTCTCCAAAAGTA	.	255	43	226	0	.	1	0	1	0	0
AMIGO3	386724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49755505	49755505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	AMIGO3-91	NM_198722	exon1	c.A1394G	p.N465S	CGGCCATTGAGGC	.	127	22	142	1	.	3	2	1	0	0
OTOL1	131149	hgsc.bcm.edu	37	3	161221062	161221062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	.	NM_001080440	exon4	c.A766G	p.K256E	GGACAGAAAGGTG	.	4	4	4	0	.	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228410	4228410	+	Missense_Mutation	SNP	A	A	G	rs201691469		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	OTOP1-92	NM_177998	exon1	c.T182C	p.L61P	CTGCTCAGCATCT	.	29	2	31	0	A|0.993;G|0.007	0	0	0	0	0
JMY	133746	hgsc.bcm.edu	37	5	78610479	78610479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	JMY-227	NM_152405	exon9	c.C2464A	p.P822T	CCCCCACCACCAC	.	21	3	24	1	.	1	1	0	0	0
EBF1	1879	bcgsc.ca	37	5	158158101	158158101	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	EBF1-92	NM_024007	exon11	c.T1101C	p.P367P	GTCACCAGGGTGC	.	63	4	38	0	.	0	0	0	0	0
ABCC10	89845	broad.mit.edu	37	6	43412937	43412937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	ABCC10-96	NM_001198934	exon14	c.C2915T	p.A972V	TGTATGCGACCAT	.	92	4	98	0	.	12	12	0	0	0
WASF1	8936	hgsc.bcm.edu	37	6	110424747	110424747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	WASF1-90	NM_001024935	exon8	c.G727T	p.V243L	GATCCACGTATGT	.	70	4	99	0	.	1	1	0	0	0
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121681010	121681010	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	PTPRZ1-699	NM_002851	exon21	c.G5778A	p.V1926V	TGCAGTGGGGCCT	.	108	18	118	0	.	0	0	0	0	0
MTBP	27085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	121518998	121518998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	MTBP-228	NM_022045	exon16	c.C1780T	p.P594S	GAGGGTCCTCGGG	.	84	6	87	0	.	4	4	0	0	0
SLC35D2	11046	hgsc.bcm.edu	37	9	99122448	99122448	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	SLC35D2-90	NM_007001	exon4	c.C335G	p.T112R	TTACTTGTGCTTG	.	40	2	39	0	.	1	1	0	0	0
SHROOM4	57477	hgsc.bcm.edu	37	X	50350698	50350698	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	SHROOM4-131	NM_020717	exon6	c.G3444A	p.E1148E	CTCCTCCTCCTCT	.	23	2	5	0	.	0	0	0	0	0
IRS4	8471	broad.mit.edu	37	X	107978243	107978243	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	IRS4-623	NM_003604	exon1	c.G1332A	p.R444R	AGGGTGCCGGGGA	.	197	5	194	0	.	0	0	0	0	0
MYRF	745	broad.mit.edu;bcgsc.ca	37	11	61544792	61544798	+	Frame_Shift_Del	DEL	GGTGCCC	GGTGCCC	-	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	GGTGCCC	GGTGCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	.	NM_001127392	exon12	c.1647_1653del	p.549_551del	GGCACAGGTGCCC	.	60	6	78	0	.	0	0	0	0	0
CDH10	1008	broad.mit.edu	37	5	24492973	24492973	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	CDH10-253	NM_006727	exon10	c.1577delT	p.F526fs	AAACTGAAAAAAA	.	348	7	351	0	.	0	0	0	0	0