Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
C1orf86	199990	broad.mit.edu	37	1	2125303	2125303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	C1orf86-90	NM_001256946	exon3	c.C245T	p.P82L	GTCTTGGGTCCGA	.	91	3	80	0	.	223	212	11	0	0
ACOT7	11332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6399500	6399500	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ACOT7-514	NM_181864	exon3	c.C441A	p.I147I	TGTGAGGATGTTT	.	78	18	86	1	.	0	0	0	0	0
HES2	54626	hgsc.bcm.edu	37	1	6479040	6479040	+	Missense_Mutation	SNP	G	G	A	rs2235687		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	HES2-650	NM_019089	exon4	c.C415T	p.P139S	CAGACGGGCCACT	.	5	4	1	0	G|0.916;A|0.084	0	0	0	0	0
SSX2IP	117178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	85124036	85124036	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	SSX2IP-92	NM_001166293	exon9	c.T1043A	p.I348N	TTCAAAATTCTCC	.	92	27	87	1	.	1	0	1	0	0
MYBPHL	343263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109839700	109839700	+	Missense_Mutation	SNP	G	G	C	rs200935635	alternate_allele	TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	MYBPHL-92	NM_001010985	exon4	c.C542G	p.T181R	TGCACCGTGTATC	.	183	64	217	2	G|0.999;A|0.001	0	0	0	0	0
SMG5	23381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156236156	156236156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	SMG5-231	NM_015327	exon12	c.A1271G	p.K424R	GGTTCCTTGGACT	.	89	31	85	0	.	5	3	2	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092795	1092795	+	Silent	SNP	T	T	A	rs12786761		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	MUC2-90	NM_002457	exon30	c.T4614A	p.T1538T	CACCACTCCCATC	.	15	8	0	0	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092813	1092813	+	Silent	SNP	C	C	T	rs12577898		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	MUC2-90	NM_002457	exon30	c.C4632T	p.T1544T	CACCACCACGGTG	.	32	9	1	0	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092948	1092948	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	MUC2-90	NM_002457	exon30	c.C4767G	p.T1589T	CACCACCACTACG	.	60	5	4	0	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1093368	1093368	+	Silent	SNP	G	G	A	rs111440994		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	MUC2-90	NM_002457	exon30	c.G5187A	p.T1729T	CACTACGGTGACC	.	65	7	5	0	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1093392	1093392	+	Silent	SNP	C	C	T	rs55912427		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	MUC2-90	NM_002457	exon30	c.C5211T	p.T1737T	ACCCACCGGCACA	.	75	4	6	1	.	0	0	0	0	0
INTS5	80789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62417117	62417117	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	INTS5-92	NM_030628	exon2	c.T435C	p.S145S	CCATGCACTAATC	.	111	44	126	0	.	3	1	2	0	0
ARAP1	116985	hgsc.bcm.edu;broad.mit.edu	37	11	72423355	72423355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ARAP1-91	NM_001040118	exon7	c.T908C	p.L303S	AAGGACAAGCTCA	.	23	6	20	0	.	2	2	0	0	0
PGR	5241	broad.mit.edu	37	11	100933334	100933334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	PGR-652	NM_000926	exon4	c.C2056T	p.P686S	TCAGTGGTGGAAT	.	258	6	253	0	.	0	0	0	0	0
ZW10	9183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113628545	113628545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ZW10-228	NM_004724	exon7	c.C764T	p.P255L	GCCAGCGGCCTAA	.	65	19	73	0	.	1	1	0	0	0
H3F3C	440093	ucsc.edu	37	12	31944972	31944972	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	H3F3C-68	NM_001013699	exon1	c.T129C	p.P43P	GGTCCCAGGCCTG	.	80	1	75	0	.	668	0	668	0	0
SKA3	221150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	21732196	21732196	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	SKA3-90	NM_145061	exon7	c.T984C	p.T328T	CAACGAAGTACGA	.	182	40	174	1	.	0	0	0	0	0
ITGBL1	9358	ucsc.edu;bcgsc.ca	37	13	102235670	102235670	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ITGBL1-92	NM_004791	exon6	c.G832C	p.A278P	TGTAGAGCTGTCT	.	246	83	242	2	.	1	1	0	0	0
AKAP6	9472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	33204952	33204952	+	Missense_Mutation	SNP	T	T	A	rs201928179	alternate_allele	TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	AKAP6-733	NM_004274	exon11	c.T3236A	p.L1079Q	GAAGCCTGGTAAG	.	77	26	92	0	T|0.999;C|0.000	0	0	0	0	0
DAAM1	23002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	59791109	59791109	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	DAAM1-227	NM_001270520	exon8	c.T926A	p.L309Q	AATTTCTGATGTT	.	117	35	134	0	.	0	0	0	0	0
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42005411	42005411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	MGA-522	NM_001080541	exon9	c.T3147A	p.N1049K	CAACAATGACTTC	.	117	32	132	0	.	0	0	0	0	0
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	62167108	62167108	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	VPS13C-92	NM_020821	exon77	c.A10381T	p.I3461F	CTCCAATCACTAA	.	173	60	141	0	.	0	0	0	0	0
PRR25	388199	hgsc.bcm.edu	37	16	863367	863367	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	PRR25-135	NM_001013638	exon3	c.C715T	p.R239X	CCGGACCGACACG	.	12	6	5	1	.	0	0	0	0	0
ZZEF1	23140	broad.mit.edu	37	17	3977517	3977517	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ZZEF1-93	NM_015113	exon24	c.G3612A	p.L1204L	TAAATCCAGCCCC	.	364	6	301	0	.	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	G	rs121912666		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	TP53-70225	NM_000546	exon6	c.A659C	p.Y220S	GGCTCATAGGGCA	.	61	9	44	0	.	4	4	0	0	0
SLC47A1	55244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	19451346	19451346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	SLC47A1-90	NM_018242	exon4	c.A355G	p.S119G	CAGCGGAGTGCGC	.	110	59	72	1	.	18	7	11	0	0
CHAD	1101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48546019	48546019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	CHAD-92	NM_001267	exon1	c.G156T	p.K52N	CTTGGTCTTCTCT	.	86	17	70	0	.	1	0	1	0	0
TSHZ3	57616	hgsc.bcm.edu	37	19	31770237	31770237	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	TSHZ3-232	NM_020856	exon2	c.T462C	p.S154S	GCTGCTACTGCTG	.	20	3	26	0	.	7274	3	7259	7	5
CAPNS1	826	hgsc.bcm.edu	37	19	36631958	36631958	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	CAPNS1-90	NM_001749	exon2	c.C45G	p.G15G	CGGCGGCGGGGGA	.	13	2	9	0	.	0	0	0	0	0
LILRB4	11006	broad.mit.edu	37	19	55175654	55175654	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	LILRB4-93	NM_006847	exon4	c.A373C	p.T125P	AAACCCACCCTTT	.	119	10	110	12	.	10	9	1	0	0
ZNF628	89887	hgsc.bcm.edu	37	19	55993790	55993790	+	Silent	SNP	A	A	G	rs7254184		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ZNF628-22	NM_033113	exon3	c.A1230G	p.E410E	CGTGGAAGAGGCC	.	3	3	1	1	A|0.440;G|0.560	0	0	0	0	0
POMC	5443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25387619	25387619	+	Missense_Mutation	SNP	C	C	T	rs146551109		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	POMC-91	NM_001035256	exon3	c.G23A	p.R8H	CCCGAGCGGCTGC	.	98	27	63	0	C|1.000;T|0.000	0	0	0	0	0
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32656054	32656054	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	BIRC6-233	NM_016252	exon12	c.A3144C	p.E1048D	GGTAGAAGTTCAA	.	63	20	76	0	.	0	0	0	0	0
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178098956	178098956	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	NFE2L2-90	NM_006164	exon2	c.T89G	p.L30R	ACTCCAAGATCTA	.	66	7	62	0	.	1	1	0	0	0
AGPS	8540	hgsc.bcm.edu;broad.mit.edu	37	2	178301498	178301498	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	AGPS-92	NM_003659	exon4	c.T448G	p.L150V	GCATCCTTAAATC	.	115	7	100	0	.	0	0	0	0	0
SSFA2	6744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	182786760	182786760	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	SSFA2-153	NM_001130445	exon16	c.G3296C	p.G1099A	CTCCTGGAGAAAG	.	134	30	114	0	.	7	3	4	0	0
ZFAND2B	130617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220072989	220072989	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ZFAND2B-68	NM_138802	exon5	c.T446G	p.I149S	CTGCCATCTCCAG	.	54	18	40	0	.	0	0	0	0	0
UGT1A3	54659	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	234637943	234637943	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	UGT1A3-24	NM_019093	exon1	c.G171A	p.Q57Q	CCACCAGGCAGTG	.	76	21	70	0	.	0	0	0	0	0
ASB1	51665	broad.mit.edu	37	2	239344354	239344354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ASB1-226	NM_001040445	exon3	c.G194A	p.R65H	GCAGCCGCATCAA	.	39	3	15	0	.	0	0	0	0	0
RBPJL	11317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	43940944	43940944	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	RBPJL-227	NM_014276	exon6	c.C528T	p.R176R	GCTGCGCGGGGGC	.	44	14	39	1	.	0	0	0	0	0
BRWD1	54014	bcgsc.ca	37	21	40608669	40608669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	BRWD1-94	NM_018963	exon23	c.G2618A	p.G873D	TTGATGCCCGCAT	.	68	5	64	0	.	0	0	0	0	0
TOP3B	8940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	22327036	22327036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	TOP3B-538	NM_003935	exon4	c.C257A	p.P86H	TCCGTGGGAGCTT	.	69	29	65	0	.	2	0	2	0	0
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24483456	24483456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	CABIN1-94	NM_001199281	exon23	c.C3315A	p.D1105E	TCAGGACAAGCTG	.	61	15	85	0	.	1	0	1	0	0
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	25651158	25651158	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	TOP2B-273	NM_001068	exon29	c.T3817G	p.F1273V	CACTGAATTCTTC	.	13	4	10	0	.	10	8	2	0	0
TCAIM	285343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	44438258	44438258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	.	NM_173826	exon8	c.C817T	p.R273C	ACAGACCGTTCTG	.	128	55	91	0	.	1	1	0	0	0
CCDC58	131076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122102042	122102042	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	CCDC58-90	NM_001017928	exon1	c.T30C	p.C10C	CTCCTCACAGTTC	.	125	14	96	0	.	38	36	2	0	0
PIK3CB	5291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	138409857	138409857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	PIK3CB-1311	NM_006219	exon13	c.T2021C	p.L674P	CAAAATAGAAACT	.	269	63	188	0	.	3	3	0	0	0
PDE6B	5158	hgsc.bcm.edu;broad.mit.edu	37	4	619837	619837	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	PDE6B-90	NM_001145291	exon1	c.A422C	p.H141P	TGGGCCACGTGGC	.	9	5	12	0	.	0	0	0	0	0
JMY	133746	hgsc.bcm.edu	37	5	78610479	78610479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	JMY-227	NM_152405	exon9	c.C2464A	p.P822T	CCCCCACCACCAC	.	29	3	27	1	.	1	1	0	0	0
CMYA5	202333	hgsc.bcm.edu	37	5	79032748	79032748	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	CMYA5-77	NM_153610	exon2	c.T8160C	p.T2720T	GAAAACTAAGACT	.	26	3	38	0	.	0	0	0	0	0
CYFIP2	26999	broad.mit.edu	37	5	156819902	156819902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	CYFIP2-22	NM_001037332	exon31	c.C3656T	p.A1219V	TTTTTGCCATCCT	.	115	4	85	0	.	112	112	0	0	0
SCAND3	114821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	28543371	28543371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	SCAND3-91	NM_052923	exon3	c.G1111T	p.V371F	AACTAACTTCCTT	.	199	63	195	0	.	0	0	0	0	0
ZNF451	26036	hgsc.bcm.edu	37	6	56989646	56989646	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ZNF451-93	NM_001031623	exon4	c.A301G	p.R101G	AAGAATAGAGCAT	.	40	2	56	0	.	0	0	0	0	0
INTS1	26173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	1535858	1535858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	.	NM_001080453	exon12	c.A1645G	p.M549V	GCATCATGGACAC	.	136	35	93	0	.	6	5	1	0	0
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	121668665	121668665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	PTPRZ1-699	NM_002851	exon14	c.C5048A	p.S1683Y	TTATATCCACACC	.	173	11	132	0	.	0	0	0	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147183114	147183114	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	CNTNAP2-100	NM_014141	exon11	c.T1758G	p.S586R	ATACAGTGGGGCC	.	106	14	62	9	.	0	0	0	0	0
KIAA0146	23514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48308957	48308957	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	KIAA0146-68	NM_001080394	exon6	c.G547C	p.E183Q	ATTTTAGAGTATT	.	64	22	62	1	.	0	0	0	0	0
FER1L6	654463	ucsc.edu;bcgsc.ca	37	8	125074167	125074167	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	FER1L6-100	NM_001039112	exon25	c.T3222A	p.S1074R	GAGGAGTACCCTT	.	141	46	165	2	.	0	0	0	0	0
SVEP1	79987	hgsc.bcm.edu	37	9	113259109	113259109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	SVEP1-75	NM_153366	exon8	c.A1786G	p.N596D	CAGAGTTGTCTTT	.	12	4	4	0	.	0	0	0	0	0
DDX53	168400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	23019108	23019108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	DDX53-228	NM_182699	exon1	c.G934A	p.V312M	CTTCACGTGGAAG	.	64	36	68	0	.	0	0	0	0	0
ZNF559	84527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9452840	9452840	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ZNF559-91	NM_001202406	exon6	c.905delA	p.E302fs	.	.	110	38	106	0	.	0	0	0	0	0
ABHD16A	7920	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31655645	31655646	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ABHD16A-91	NM_021160	exon17	c.1403_1404insC	p.R468fs	.	.	118	21	135	0	.	0	0	0	0	0