Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	79386001	79386001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ELTD1-24	NM_022159	exon10	c.C1328T	p.A443V	CATATGGCAAGAC	.	135	37	161	0	.	37	37	0	0	0
LMNA	4000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156105085	156105085	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	LMNA-228	NM_170707	exon5	c.C918T	p.L306L	CCAGCTCAGCCAG	.	35	10	37	0	.	400	212	188	0	0
SUSD4	55061	hgsc.bcm.edu	37	1	223401081	223401081	+	Splice_Site	SNP	C	C	G	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SUSD4-68	NM_017982	exon8	c.917-1G>C	.	TTTGCTCTGCATG	.	33	2	20	0	.	0	0	0	0	0
ST8SIA6	338596	broad.mit.edu	37	10	17401582	17401582	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ST8SIA6-91	NM_001004470	exon4	c.A308T	p.Y103F	TGAAGGTAGTCGT	.	41	3	55	0	.	0	0	0	0	0
NELL2	4753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	45097517	45097517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	NELL2-517	NM_001145107	exon13	c.A1460G	p.Y487C	TCACAGTAGGCAT	.	104	32	136	0	.	0	0	0	0	0
PABPC3	5042	ucsc.edu	37	13	25672007	25672007	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	PABPC3-72	NM_030979	exon1	c.A1671G	p.L557L	AATGTTAGGTGAA	.	90	1	156	0	.	0	0	0	0	0
ELMSAN1	91748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	74196477	74196477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	.	NM_194278	exon4	c.A1961G	p.Y654C	GGCGTGTAGGGAG	.	78	23	95	0	.	77	52	25	0	0
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33905537	33905537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	RYR3-520	NM_001243996	exon19	c.G2318T	p.G773V	CAGACGGGCTCTT	.	32	18	52	0	.	0	0	0	0	0
SF3B3	23450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	70595650	70595650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SF3B3-91	NM_012426	exon17	c.C2251T	p.P751S	CAGTGTCCCGAGG	.	155	60	157	1	.	302	199	103	0	0
NUP88	4927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	5314095	5314095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	NUP88-204	NM_002532	exon4	c.G608A	p.R203H	GGCTCACGTAGTG	.	240	84	254	0	.	39	23	16	0	0
MYH3	4621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10554908	10554908	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	MYH3-95	NM_002470	exon5	c.C426T	p.G142G	TCGGTAGCCTTCC	.	232	68	243	0	.	0	0	0	0	0
DCAF7	10238	broad.mit.edu;bcgsc.ca	37	17	61628109	61628109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	DCAF7-91	NM_005828	exon1	c.G71T	p.W24L	TGAACTGGAGTGT	.	47	4	50	0	.	108	108	0	0	0
GH1	2688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61995168	61995168	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	GH1-522	NM_000515	exon4	c.C408A	p.V136V	GTCATAGACGTTG	.	131	57	128	0	.	0	0	0	0	0
RYR1	6261	broad.mit.edu;bcgsc.ca	37	19	38948197	38948197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	RYR1-100	NM_001042723	exon17	c.G1852T	p.D618Y	AACCAAGATCTTA	.	291	10	278	0	.	0	0	0	0	0
ZNF175	7728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52091521	52091521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ZNF175-90	NM_007147	exon5	c.T1937C	p.L646P	AATGCCTTGACTG	.	156	50	154	0	.	5	3	2	0	0
SLC5A6	8884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27427384	27427384	+	Missense_Mutation	SNP	G	G	A	rs199587675		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SLC5A6-92	NM_021095	exon9	c.C950T	p.A317V	TAATACGCGAACA	.	107	33	109	0	.	14	7	7	0	0
RAB3GAP1	22930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	135815628	135815628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	RAB3GAP1-92	NM_001172435	exon3	c.G122A	p.G41E	TGATTGGAAACTC	.	76	27	66	0	.	62	37	25	0	0
NEB	4703	hgsc.bcm.edu	37	2	152372972	152372972	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	NEB-145	NM_001164507	exon158	c.22905+1G>T	.	GACTTACCCCACT	.	35	2	27	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179429062	179429062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	TTN-636	NM_001267550	exon326	c.C81797A	p.A27266E	TCTCTTGCAGTAA	.	135	31	138	0	.	0	0	0	0	0
PDCD1	5133	hgsc.bcm.edu	37	2	242794400	242794400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	PDCD1-69	NM_005018	exon3	c.T542C	p.L181P	AGCACCAGGCTGC	.	31	2	26	0	.	0	0	0	0	0
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2998529	2998529	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	PTPRA-227	NM_002836	exon17	c.C1011T	p.V337V	CATCGTCATGGTT	.	57	27	69	0	.	181	88	93	0	0
ASXL1	171023	bcgsc.ca	37	20	31024236	31024236	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ASXL1-2057	NM_015338	exon12	c.G3721T	p.E1241X	AGTTGTGAAGATC	.	137	6	109	0	.	78	77	1	0	0
R3HDML	140902	hgsc.bcm.edu	37	20	42969909	42969909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	R3HDML-90	NM_178491	exon2	c.A335G	p.Q112R	CTTCACAGCTGAT	.	76	4	85	1	.	0	0	0	0	0
SCO2	9997	broad.mit.edu	37	22	50962803	50962803	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SCO2-226	NM_001169111	exon2	c.G38C	p.R13T	GAGAGCCTGTGCC	.	66	3	62	1	.	69	67	2	0	0
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu	37	3	52813483	52813483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ITIH1-93	NM_002215	exon5	c.A446G	p.H149R	CCATCCACCTCAC	.	99	5	94	0	.	0	0	0	0	0
U2SURP	23350	hgsc.bcm.edu	37	3	142747194	142747194	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	U2SURP-71	NM_001080415	exon15	c.A1392C	p.E464D	ATTTGAAAACCAG	.	36	2	40	0	.	0	0	0	0	0
CP	1356	hgsc.bcm.edu;broad.mit.edu	37	3	148916162	148916162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	CP-515	NM_000096	exon9	c.G1705T	p.G569W	GTCTCCCATTTGC	.	93	15	85	0	.	0	0	0	0	0
ECT2	1894	hgsc.bcm.edu	37	3	172520417	172520417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ECT2-724	NM_001258315	exon19	c.A1919G	p.E640G	TTAATGAGGATAA	.	59	3	64	0	.	0	0	0	0	0
FYTTD1	84248	broad.mit.edu;bcgsc.ca	37	3	197501076	197501076	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	FYTTD1-90	NM_032288	exon6	c.T651C	p.T217T	GAGAACTCGTCAG	.	127	5	142	0	.	0	0	0	0	0
ADH4	127	bcgsc.ca	37	4	100052684	100052684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ADH4-228	NM_000670	exon6	c.C814A	p.L272I	AGTCAAGGGCAAA	.	96	5	104	0	.	2	2	0	0	0
PRSS12	8492	hgsc.bcm.edu	37	4	119273492	119273492	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	PRSS12-91	NM_003619	exon1	c.T384A	p.A128A	CAGCTGAGCCCAG	.	8	4	3	0	.	0	0	0	0	0
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1094290	1094290	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SLC12A7-138	NM_006598	exon2	c.G198A	p.G66G	GTTCTTCCCTTCA	.	87	49	171	0	.	23	3	20	0	0
SPOCK1	6695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	136314458	136314458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SPOCK1-91	NM_004598	exon11	c.G1205A	p.R402Q	AGCTCCCGTTCAT	.	101	62	194	2	.	267	49	218	0	0
PCDHA12	56137	hgsc.bcm.edu	37	5	140257068	140257068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	.	NM_018903	exon1	c.G2011C	p.E671Q	CTGGTGGAGAACG	.	38	2	63	0	.	8	8	0	0	0
NYAP1	222950	broad.mit.edu;bcgsc.ca	37	7	100086267	100086267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	.	NM_173564	exon4	c.C923T	p.P308L	CCCTCCCGAGCCG	.	148	6	132	0	.	0	0	0	0	0
POP1	10940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	99142345	99142345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	POP1-154	NM_001145860	exon5	c.C626T	p.A209V	GGCACGCCAAGCG	.	115	45	128	0	.	5	3	2	0	0
PUF60	22827	broad.mit.edu	37	8	144898885	144898885	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	.	NM_078480	exon12	c.C1485T	p.R495R	GATGACGCGGTTC	.	247	7	286	0	.	238	227	11	0	0
C9orf66	157983	hgsc.bcm.edu	37	9	215109	215109	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	C9orf66-514	NM_152569	exon1	c.C288A	p.L96L	GGGGCCGAGGCCG	.	6	6	4	2	.	0	0	0	0	0
SSX1	6756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	48123289	48123289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SSX1-522	NM_005635	exon6	c.G403A	p.D135N	CAAAACGATGGGA	.	345	19	334	0	.	0	0	0	0	0
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	109694572	109694572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	RGAG1-132	NM_020769	exon3	c.T727C	p.S243P	GCAATGTCCAAAG	.	180	55	195	2	.	0	0	0	0	0
USP26	83844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	132160221	132160221	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	USP26-661	NM_031907	exon1	c.T2028G	p.P676P	GCTGGCAGGTTTA	.	196	41	215	0	.	0	0	0	0	0
NLGN4Y	22829	hgsc.bcm.edu	37	Y	16952767	16952767	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	.	NM_014893	exon6	c.C2076T	p.A692A	CTTAGCCTTTGCG	.	5	4	2	1	.	0	0	0	0	0
LSM14A	26065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	34710448	34710449	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	LSM14A-91	NM_001114093	exon7	c.934_935del	p.312_312del	.	.	142	59	144	0	.	0	0	0	0	0
ACTR1B	10120	broad.mit.edu;bcgsc.ca	37	2	98275011	98275014	+	Frame_Shift_Del	DEL	GAGT	GAGT	-	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	GAGT	GAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ACTR1B-91	NM_005735	exon6	c.533_536del	p.178_179del	ATGATGGAGTGAG	.	67	10	99	0	.	0	0	0	0	0